New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3989295	40 (0.950)	5 (0.120)	5/246	NT	12.3%	coding (1813/2085 nt)	oplA	5‑oxoprolinase A
	?	NC_002947	= 3989343	33 (0.820)					coding (1861/2085 nt)	oplA	5‑oxoprolinase A

TGATCAGCCGCTTCCACAGCCGGCACCAGACCCTGTACTCGTACAGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCA‑GGGGCCGGCCGAGCCCCCCGCCCCCACCGCGCAATCCGTCCGCCCGATGCTGTTCAGTGCCGACGGTGAATGGCAGCCCACACCGGTGTTCAACGGCAACCACCTGTTGCCTGGGCAGACCGTGCATGGCCCCTGTGTGATCGAGGAAGACACCAC  >  NC_002947/3989206‑3989491                                                                                                                                           |                                                                                                                                                     tGATCAGCCGCTTCCACAGCCGGCACCAGACCCTGTACTCGTACAGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCA‑GGGGCCGGCCGAGcccccc                                                                                                                                           <  8:15755/149‑1 (MQ=255)      aGCCGGTTCCAAATCCGGCACGATACCATGTACTAGTAAAGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGATTGCTCGGTGTTCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCA‑GGGGCCGGCCGAGCCCCCCGcccc                                                                                                                                      <  2:232260/149‑1 (MQ=255)        ccGCTTCCACAGCCGGCACCAGACCCTGTACTCGTACAGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCA‑GGGGCCGGCCGAGCCCCCCGCCCCCa                                                                                                                                    >  4:208880/1‑149 (MQ=255)           cTTCCACAGCCGGCACCAGACCCTGTACTCGTACAGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCA‑GGGGCCGGCCGAGCCCCCCGCCCCCACcg                                                                                                                                 >  6:100687/1‑149 (MQ=255)                          ccAGACCCTGTACTCGTACAGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCA‑GGGGCCGGCCGAGCCCCCCGCCCCCACCGCGCAATCCGTCCGcc                                                                                                                  <  2:33088/149‑1 (MQ=255)                          ccAGACCCTGTACTCGTACAGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCA‑GGGGCCGGCCGAGCCCCCCGCCCCCACCGCGCAATCCGTCCGcc                                                                                                                  <  2:37095/149‑1 (MQ=255)                              aCCCTGTACTCGTACAGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCA‑GGggccgg                                                                                                                                                      <  7:229670/109‑1 (MQ=255)                              aCCCTGTACTCGTACAGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCA‑GGggccgg                                                                                                                                                      >  8:229670/1‑109 (MQ=255)                              aCCCTGTACTCGTACAGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCA‑GGGGCCGGCCGAGCCCCCCGCCCCCACCGCGCAATCCGTCCGCCCGAt                                                                                                              <  3:68787/149‑1 (MQ=255)                                       gagTACAGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCA‑GGGGCCGGCCGAGCCCCCCGCCCCCCCCGCGCAAACCGTCCGCCCGATGCAGTTCAg                                                                                                     >  8:237791/3‑149 (MQ=255)                                         gTACAGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCA‑GGGGCCGGCCGAGCCCCCCGCCCCCACCGCGCAATCCGTCCGCCCGATGCTGTTCAGTg                                                                                                   >  4:141396/1‑149 (MQ=255)                                             aGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCA‑GGGGCCGGCCGAGCCCCCCGCCCCCACCGCGCAATCCGTCCGCCCGATGCTGTTCAGTTCCGa                                                                                               >  2:78840/1‑149 (MQ=255)                                             aGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCA‑GGGGCCGGCCGAGCCCCCCGCCCCCACCGCGCAATCCGTCCGCCCGATGCTGTTCAGTGCCGa                                                                                               <  3:208880/149‑1 (MQ=255)                                                 aaCCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCA‑GGGGCCGGCCGAGCCCCCCGCCCCCACCGCGCAATCCGTCCGCCCGATGCTGTTCAGTGCCGACGGt                                                                                           <  7:237791/149‑1 (MQ=255)                                                        ccgCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCA‑GGGGCCGGCCGAGCCCCCCGCCCCCACcg                                                                                                                                 <  2:133382/102‑1 (MQ=255)                                                               gTGGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCA‑GGGGCCGGCCGAGCCCCCCGCCCCCACCGCGCAATCCGTCCGCCCGATGCTGTTCAGTGCCGACGGTGAATGGCAGCCcac                                                                             <  3:231564/149‑1 (MQ=255)                                                                   aGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCA‑GGGGCCGGCCGAGCCCCCCGCCCCCACCGCGCAATCCGTCCGCCCGATGCTGTTCAGTGCCGACGGTGAATGGCAGCCCACACCg                                                                         <  5:56113/149‑1 (MQ=255)                                                                          gAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCA‑GGGGCCGGCCGAGCCCCCCGCCCCCACCGCGCAATCCGTCCGCCCGATGCTGTTc                                                                                                       <  5:53694/112‑1 (MQ=255)                                                                          gAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCA‑GGGGCCGGCCGAGCCCCCCGCCCCCACCGCGCAATCCGTCCGCCCGATGCTGTTCAGTGCCGACGGTGAATgg                                                                                     <  5:124949/130‑1 (MQ=255)                                                                          gAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCA‑GGGGCCGGCCGAGCCCCCCGCCCCCACCGCGCAATCCGTCCGCCCGATGCTGTTCAGTGCCGACGGTGAATgg                                                                                     >  6:124949/1‑130 (MQ=255)                                                                             ccTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCA‑GGGGCCGGCCCAGCACCCCCCCCCCCCCCCGCAATCCGTCCGCCCGCTGGTGTTGAATGGCGCCCGTGAAATGCAGCCCACCCCGGTGTTCAAcc                                                               >  4:113474/1‑148 (MQ=255)                                                                              cTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCA‑GGGGCCGGCCGAGCCCCCCGCCCCCCCCGCGCAAGCCGTCCGCCCGATGCGGTTCAGTGCCGACGGTGAATGGCAGCCCCCACCGGTGttacaag                                                               >  4:152171/1‑143 (MQ=255)                                                                              cTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCA‑GGGGCCGGCCGAGCCCCCCGCCCCCACCGCGCAATCCGTCCGCCCGATGCTGTTCAGTGCCGACGGTGAATGGCAGCCCACACCGGTGTTCAACg                                                               <  3:152171/148‑1 (MQ=255)                                                                                     gCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCA‑GGGGCCGGccgagcactccaggttcaccagctccaccgggctggcgggttcgctgtacgagtacagggtctggtgccggctgtggaagcggctgatcagc                                                          >  1:236781‑M2/1‑54 (MQ=255)                                                                                     gCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCA‑GGGGCCGGccgagcactccaggttcaccagctccaccgggctggcgggttcgctgtacgagtacagggtctggtgccggctgtggaagcggctgatcagc                                                          <  2:236781‑M2/146‑93 (MQ=255)                                                                                      cTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCA‑GGGGCCGGccgagcactccaggttcaccagctccaccgggctggcgggttcgctgtacgagtacagggtctggt                                                                                    >  7:242076‑M2/1‑53 (MQ=255)                                                                                      cTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCA‑GGGGCCGGccgagcactccaggttcaccagctccaccgggctggcgggttcgctgtacgagtacagggtctggt                                                                                    <  8:242076‑M2/119‑67 (MQ=255)                                                                                       tCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCA‑GGGGCCGGccgagcactccaggttcaccagctccaccgggctggcgggttcgctgtacgagtacagggtctggtgccggctgtggaagcggctgatcagcgcggc                                                     <  8:62797‑M2/149‑98 (MQ=255)                                                                                       tCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCA‑GGGGCCGGCCGAGCCCCCCGCCCCCCCCGCGCCATCCGTCCGCCCGATGCTGTTCAGTGCCGCCGGTGAATGGCAGCCCACACCGGTGTTCAACGGCAACCACCt                                                     >  3:213703/1‑149 (MQ=255)                                                                                             aTCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCA‑GGGGCCGGCCGAGCCCCCCCCCCCCCCCGCGCAAAACGTCCGCCCCATGCGGTTGAGTTCCGGCCGTGAATGGCAGCCCACCCCCGGGGTAAAACGCAACCACCGGTTGcc                                               >  4:130154/1‑149 (MQ=255)                                                                                                       ggccagccccgccGCAACCC‑TCCTGGACGGGGCGGGCCTTGCCCCCGGCCCCCCCCGCGCAACCCGTCCG‑CCGATGCTGTTCAGTGCCGACGGTGAATGGCAGCCCACACCGGTGTTCAACGGCAACCACCTGTTGCCTGGGCAGACCg                                    <  5:100687/142‑1 (MQ=255)                                                                                                       ccgctctcccgccGCAACCCGAGCTGCA‑GGGGCCGGCCGAGCCCCCCGCCCCCACCGCGCAATCCGTCCGCCCGATGCAGTTCAGTGCCGACGGTGAATGGCAGCCCACACCGGTGTTCAACGGCAACCACCTGTTGCCTGGGCAGAc                                      <  7:176753/141‑1 (MQ=255)                                                                                                        gCCACGCCCGCCGCAACCCGAGCTGCA‑GGGGCCGGCCGAGCCCCCCCCCCCCCCCCCCCAAAACCTACACCCCAAACATGTAAGTGACGACGGTGAATGGCAGCCCACACCCGTTTTAAAAGGCAACCACCAGTTTGCGGGGCAGAccc                                    >  8:40263/1‑148 (MQ=255)                                                                                                               ccgccgCAACCCGAGCTGCA‑GGGGCCGGCCGAGCCCCCCGCCCCCACCGCGCAATCCGTCCGCCCGATGCTGTTCAGTGCCGACGGTGAATGGCAGCCCACACCGGTGTTc                                                                   <  2:248852/111‑1 (MQ=255)                                                                                                               ccgccgCAACCCGAGCTGCA‑GGGGCCGGCCGAGCCCCCCGCCCCCACCGCGCAATCCGTCCGCCCGATGCTGTTCAGTGCCGACGGTGAATGGCAGCCCACACCGGTGTTc                                                                   >  1:248852/1‑111 (MQ=255)                                                                                                                cgccgcAACCCGAGCTGCA‑GGGGCCGGCCGCGACCCCCCCCCCCACCGCCCAATACCGCCCCCCCATGCAGTTCAGAGCCGCCGGTGAATGGCAGCCCCCCCCGGTGTTCAACGGCAACCCCCATTTGCCTGGGGATACCCTGCAAGGc                            >  2:250761/1‑149 (MQ=255)                                                                                                                    gcAACCCGAGCTGCA‑GGGGCCGGCCGAGCCCCCCGCCCCCACCGCGCAATCCGTCCGCCCGATGCTGTTCAGTGCCGACGGTGAATGGCAGCCCACACCGGTGTTCAACGGCAACCACCTGTTGCCTGGGCAGACCGTGCATGGCCCCt                        >  7:224175/1‑149 (MQ=255)                                                                                                                        cccGAGCTGCA‑GGGGCCGGCCGAGCCCCCCGCCCCCACCGCGCAATCCGTCCGCCCGATGCTGTTCAGTGCCGACGGTGAATGGCAGCCCACACCGGTGTTCAACGGCAACCACCTGTTGCCTGGGCAGACCGTGCATGGCCCCtgtgt                    <  3:141396/149‑1 (MQ=255)                                                                                                                                 cA‑GGGGCCGGCCGAGCCCCCCGCCCCCACCGCGCAATCCGTCCGCCCGATTCTGTTCATTGCCGATGGTGTATTGCATCCCACATCGGTGTTTAAAGGCAAACACCTTTTTCCTGGGCATTCCGTGCATGGCCCCTGTGTGATCGAg             <  7:40263/147‑1 (MQ=255)                                                                                                                                 cA‑GGGGCCGGCCGAGCCCCCCGCCCCCACCGCGCAATCCGTCCGCCCGATGCTGTTCAGTGCCGACGGTGAATGGCAGCCCACACCGGTGTTCAACGGCAACCACCTGTTGCCTGGGCAGACCGTGCATGGCCCCTGTGTGATCGAg             <  2:236883/147‑1 (MQ=255)                                                                                                                                  a‑GGGGCCGGCCGAGCCCCCCGCCCCCACCGCGCAATCCGTCCGCCCGATGCTGTTCAGTGCCGACGGTGAATGGCAGCCCACACCGGTGTTCAACGGCAACCACCTGTTGCCTGGGCAGACCGTGCATGGCCCCTGTGTGATCGAGGaa          <  3:112100/149‑1 (MQ=255)                                                                                                                                        ccggccgAGCCCCCCGCACCCACCGCGCAATCCGTCCGCCCGATGCTGTTCAGTGCCGACGGTGAATGGCAGCCCACACCGGTGTTCAACGGCAACCACCTGTTGCCTGGGCAGACCGTGCATGGCCCCTGTGTGATCGAGGAAGacac     <  1:250761/149‑1 (MQ=255)                                                                                                                                           gccgAGCCCCCCGCCCCCACCGCGCAATCCGTCCGCCCGATGCTGTTCAGTGCCGACGGTGAATGGCAGCCCACACCGGTGTTCAACGGCAACCACCTGTTGCCTGGTCATACCGTGCATGGCCCCTGTGTGATCGAGGAAGAcaccac  <  3:113474/149‑1 (MQ=255)                                                                                                                                           |                                                                                                                                                     TGATCAGCCGCTTCCACAGCCGGCACCAGACCCTGTACTCGTACAGCGAACCCGCCAGCCCGGTGGAGCTGGTGAACCTGGAGTGCTCGGTGATCGGCCACCTGCCACGCCCGCCGCAACCCGAGCTGCA‑GGGGCCGGCCGAGCCCCCCGCCCCCACCGCGCAATCCGTCCGCCCGATGCTGTTCAGTGCCGACGGTGAATGGCAGCCCACACCGGTGTTCAACGGCAACCACCTGTTGCCTGGGCAGACCGTGCATGGCCCCTGTGTGATCGAGGAAGACACCAC  >  NC_002947/3989206‑3989491

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.