New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4351863 =	42 (0.990)	3 (0.070)	3/250	NT	7.6%	coding (342/381 nt)	PP_3824	hypothetical protein
	?	NC_002947	4351938 =	32 (0.780)					coding (267/381 nt)	PP_3824	hypothetical protein

TGCCGATCATCACGCGTCTCAACGGTGTCATCACGAATCTCCTTTTCTTTTGTTATATGTTTAGGCTTAAAACATATAAGCAGAGAAAGGAGGACCCGTTGCTTCAGATCAACTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAG‑CGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTCGATATCCACCAGCGCCGCTGGGCCGGCACCTGAGGTGATTTTCTGCGGTACGATCAGCCGCAGGCCGTCGCCACG  >  NC_002947/4351716‑4352009                                                                                                                                                    |                                                                                                                                                    tGCCGATCATCACGCGTCTCAACGGTGTCATCACGAATCTCCTTTTCTTTTGTTATATGTTTAGGCTTAAAACATATAAGCAGAGAAAGGAGGACCCGTTGCTTCAGATCAACTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACAt                                                                                                                                                    >  2:10601/1‑149 (MQ=255)   gagcccacgcgcctatgccgactgcgtaaaggagaagcttgccgatacgcgtgacccgctgaccgaagagcagcgtggcgacggcctgcggctgatcgtaccgcagaaaatcacctcaggtgccggcccagcggcgctggtggatATc                                                                                                                                                   <  4:97728‑M1/3‑1 (MQ=255)   gagcccacgcgcctatgccgactgcgtaaaggagaagcttgccgatacgcgtgacccgctgaccgaagagcagcgtggcgacggcctgcggctgatcgtaccgcagaaaatcacctcaggtgccggcccagcggcgctggtggatATc                                                                                                                                                   <  2:52585‑M1/3‑1 (MQ=255)   ccGATCATCACGCGTCTCAACGGTGTCATCACGAATCTCCTTTTCTTTTGTTATATGTTTAGGCTTAAAACATATAAGCAGAGAAAGGAGGACCCGTTGCTTCAGATCAACTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACATCg                                                                                                                                                  >  8:14969/1‑149 (MQ=255)          tcaCGCGTCTCAACGGTGTCATCACGAATCTCCTTTTCTTTTGTTATATGTTTAGGCTTAAAACATATAAGCAGAGAAAGGAGGACCCGTTGCTTCAGATCAACTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACATCGCCAAGgc                                                                                                                                           >  4:33001/1‑149 (MQ=255)                             cagcaCGAATCTCCTTTTCTTTTGTTATATGTTTAGGCTTAAAACATATAAGCAGAGAAAGGAGGACCCGTTGCTTCAGATCAACTTCCGGAGATGCAGTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAG‑CGGGAAGTTATTCAg                                                                                                                       <  4:153980/146‑1 (MQ=255)                              atcaCGAATCTCCTTTTCTTTTGTTATATGTTTAGGCTTAAAACATATAAGCAGAGAAAGGAGGACCCGTTGCTTCAGATCAACTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAG‑CGGGAAGtt                                                                                                                             >  8:43080/1‑142 (MQ=255)                              atcaCGAATCTCCTTTTCTTTTGTTATATGTTTAGGCTTAAAACATATAAGCAGAGAAAGGAGGACCCGTTGCTTCAGATCAACTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAG‑CGGGAAGtt                                                                                                                             <  7:43080/142‑1 (MQ=255)                               tcaCGAATCTCCTTTTCTTTTGTTATATGTTTAGGCTTAAAACATATAAGCAGAGAAAGGAGGACCCGTTGCTTCAGATCAACTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAG‑CGGGAAGTTATTCAGcc                                                                                                                     >  2:165091/1‑149 (MQ=255)                               tcaCGAATCTCCTTTTCTTTTGTTATATGTTTAGGCTAAAAACATATAAGCAGAGAAAGGAGGACCCGTTGCTTCAGATCAACTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAG‑CGGGAAGTTATTCAGcc                                                                                                                     >  2:168990/1‑149 (MQ=255)                                caCGAATCTCCTTTTCTTTTGTTATATGTTTAGGCTTAAAACATATAAGCAGAGAAAGGAGGACCCGTTGCTTCAGATCAACTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAG‑CGGGAAGTTATTCAGCCg                                                                                                                    >  2:130608/1‑149 (MQ=255)                                        tcCTTTTCTTTTGTTATATGTTTAGGCTTAAAACATATAAGCAGAGAAAGGAGGACCCGTTGCTTCAGATCAACTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAG‑CGGGAAGTTATTCAGCCGCTCGTg                                                                                                              >  5:153537/1‑147 (MQ=255)                                         ccTTTTCTTTTGTTATATGTTTAGGCTTAAAACATATAAGCAGAGAAAGGAGGACCCGTTGCTTCAGATCAACTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAG‑CGGGAAGTTATTCAGCCGCTCGTGCAg                                                                                                           >  3:15342/1‑149 (MQ=255)                                          cttttcttttGTTATATGTTTAGGCTTAAAACATATAAGCAGAGAAAGGAGGACCCGTTGCTTCAGATCAACTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAG‑CGGGAAGTTATTCAGCCGCTCGTGCa                                                                                                            <  3:33001/147‑1 (MQ=255)                                           ttttcttttGTTATATGTTTAGGCTTAAAACATATAAGCAGAAAAAGGAGGACCCGTTGCTTCAGATCAACTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAG‑CGGGAAGTTATTCAGCCGCTCGTGCAGtt                                                                                                         >  1:52585/1‑149 (MQ=255)                                             ttcttttGTTATATGTTTAGGCTTAAAACATATAAGCAGAGAAAGGAGGACCCGTTGCTTCAGATCAACTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAG‑CGGGAAGTTATTCAGCCGCTCGTGCAGtt                                                                                                         <  7:14969/147‑1 (MQ=255)                                              tcttttGTTATATGTTTAGGCTTAAAACATATAAGCAGAGAAAGGAGGACCCGTTGCTTCAGATCAACTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAG‑CGGGAAGTTATTCAGCCGCTCGTGCAGTTTg                                                                                                       <  6:183318/148‑1 (MQ=255)                                                 tttGTTATATGTTTAGGCTTAAAACATATAAGCAGAGAAAGGAGGACCCGTTGCTTCAGATCAACTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAG‑CGGGAAGTTATTCAGCCGCTCGTGCAGTTTGAtgc                                                                                                   >  8:237829/1‑149 (MQ=255)                                                  ttGTTATATGTTTAGGCTTAAAACATATAAGCAGAGAAAGGAGGACCCGTTGCTTCAGATCAACTTCCTGAGATGCATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAGCCGGGAAGTTATTCAGCCGCTCGTGCAGTTTGa                                                                                                      <  1:168990/146‑1 (MQ=255)                                                  ttGTTATATGTTTAGGCTTAAAACATATAAGCAGAGAAAGGAGGACCCGTTGCTTCAGATCAACTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAGACGGGAAGTTATTCAGCCGCTCGTGCAGTTTGa                                                                                                      <  1:165091/146‑1 (MQ=255)                                                  ttGTTATATGTTTAGGCTTAAAACATATAAGCAGAGAAAGGAGGACCCGTTGCTTCAGATCAACTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAG‑CGGGAAGTTATTCAGCCGCTCGTGCAGTTTGAtgc                                                                                                   <  1:10601/148‑1 (MQ=255)                                                       atatGTTTAGGCTTAAAACATATAAGCAGAGAAAGGAGGACCCGTTGCTTCAGATCAACTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAG‑CGGGAAGTTATTCAGCCGCTCGTGCAGTTTGAtgctgctgc                                                                                             >  4:254729/1‑149 (MQ=255)                                                                     agagcagcgtggcgacggcctgcggctgatcgtaccgcagaaaatcacctcaggtgccggcccagcggcgctggtggatATCGCCAAGGCGCAG‑CGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTg                                                                               >  3:99275‑M1/80‑149 (MQ=255)                                                                     aaaaCATATAAGCAGAGAAAGGAGGACCCGTTGCTTCAGATCAACTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAG‑CGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCtgccgctgccgc                                                                                    >  4:231562/1‑144 (MQ=255)                                                                     aaaaCATATAAGCAGAGAAAGGAGGACCCGTTGCTTCAGATCAACTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAG‑CGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCtgccgctgccgc                                                                                    <  3:231562/144‑1 (MQ=255)                                                                      aaaCATATAAGCAGAGAAAGGAGGACCCGTTGCTTCAGATCAACTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAG‑CGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTgctgccgctg                                                                                        <  6:7813/139‑1 (MQ=255)                                                                      aaaCATATAAGCAGAGAAAGGAGGACCCGTTGCTTCAGATCAACTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAG‑CGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTgctgccgctg                                                                                        >  5:7813/1‑139 (MQ=255)                                                                       aaCATATAAGCAGAGAAAGGAGGACCCGTTGCTTCAGATCAACTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAG‑CGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTc                                                                             <  4:209839/149‑1 (MQ=255)                                                                        gcagcgtggcgacggcctgcggctgatcgtaccgcagaaaatcacctcaggtgccggcccagcggcgctggtggatATCGCCAAGGCGCAG‑CGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTCg                                                                            >  8:178118‑M1/77‑149 (MQ=255)                                                                            ataAGCAGAGAAAGGAGGACCCGTTGCTTCAGATCAACTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAG‑CGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTCGatat                                                                        >  3:63089/1‑149 (MQ=255)                                                                              aaGCAGAGAAAGGAGGACCCGTTGCTTCAGATCAACTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAG‑CGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGACGCTGCCGCGCTTGTCTATATc                                                                       >  6:241085/1‑148 (MQ=255)                                                                               aGCAGAGAAAGGAGGACCCGTTGCTTCAGATCAACTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAG‑CGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTCGATATcca                                                                     <  3:254729/149‑1 (MQ=255)                                                                                tcgacggcctgcggctgatcgtaccgcagaaaatcacctcagttgccggcccagcggcgctggtggatATCGCCAAGGCGCAG‑CGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTCGATATccac                                                                    >  4:18322‑M1/69‑149 (MQ=255)                                                                                  agagAAAGGAGGACCCGTTGCTTCAGATCAACTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAG‑CGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTCGATATccacca                                                                  <  8:176576/149‑1 (MQ=255)                                                                                   gagaAAGGAGGACCCGTTGCTTCAGATCAACTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAG‑CGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCGTGTCGAGTGCCACCAg                                                                 >  8:111440/1‑149 (MQ=255)                                                                                        aggaggACCCGTTGCTTCAGATCAACTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAG‑CGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTCGATATCCACCAGcgccg                                                            >  8:109654/1‑149 (MQ=255)                                                                                           aggaCCCGTTGCTTCAGATCAACTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAG‑CGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTCGATATCCACCAGCGCCGCTg                                                         <  7:237829/149‑1 (MQ=255)                                                                                                     gCTTCAGATCAACTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAG‑CGGGAAGTTATTCAGCCGCTCGTGCAGTGTGATGCTGCTGCCGCTGCCGCGCTTGTCGATATCCACCAGCGCCGCTGGGCCGGCAc                                                <  5:241085/148‑1 (MQ=255)                                                                                                      cTTCAGATCAACTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAG‑CGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTCGATATCCACCAGCGCCGCTGGGCCGGCACCt                                              >  7:210351/1‑149 (MQ=255)                                                                                                        tCAGATCAACTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAG‑CGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTCGat                                                                          >  8:59066/1‑119 (MQ=255)                                                                                                        tCAGATCAACTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAG‑CGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTCGat                                                                          <  7:59066/119‑1 (MQ=255)                                                                                                             tCAACTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAG‑CGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTCGATATCCACCAGCGCCGCTGGGCCGGCACCTGAGGTGa                                       >  7:101015/1‑149 (MQ=255)                                                                                                               aaCTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAG‑CGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGACGCGCTTGTCGATATCCACCAGCGCCGCTGGGCCGGCACCTGAGGTGAtt                                     >  6:52810/1‑149 (MQ=255)                                                                                                                             cATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAG‑CGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTCGATATCCACCAGCGCCGCTGGGCCGGCACCTGAGGTGATTTTCTGCGGTACGa                        >  7:216348/1‑148 (MQ=255)                                                                                                                               ttGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAG‑CGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTCGATATCCACCAGCGCCGCTGGGCCGGCACCTGAGGTGATTTTCTGCGGTACGAt                       >  3:97728/1‑147 (MQ=255)                                                                                                                               ttGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAG‑CGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTCGATATCCACCAGCGCCGCTGGGCCGGCACCTGAGGTGATTTTCTGCGGTACGAt                       >  5:152151/1‑147 (MQ=255)                                                                                                                                        cGCAGTGCGCACATCGCCAAGGCGCAG‑CGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTCGATATCCACCAGCGCCGCTGGGCCGGCACCTGAGGTGATTTTCTGCGGTACGATCAGCCg                 >  6:88671/1‑144 (MQ=255)                                                                                                                                        cGCAGTGCGCACATCGCCAAGGCGCAG‑CGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTCGATATCCACCAGCGCCGCTGGGCCGGCACCTGAGGTGATTTTCTGCGGTACGATCAGCCg                 <  5:88671/144‑1 (MQ=255)                                                                                                                                              gcgcACATCGCCAAGGCGCAG‑CGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTCGATATCCACCAGCGCCGCTGGGCCGGCACCTGAGGTGATTTTCTGCGGTACGATCAGCCGCAGGCCGTCGc      >  5:141381/1‑149 (MQ=255)                                                                                                                                                  acaTCGCCAAGGCGCAG‑CGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTCGATATCCACCAGCGCCGCTGGGCCGGCACCTGAGGTGATTTTCTGCGGTACGATCAGCCGCAGGCCGTCGCCACg  <  8:101015/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                    TGCCGATCATCACGCGTCTCAACGGTGTCATCACGAATCTCCTTTTCTTTTGTTATATGTTTAGGCTTAAAACATATAAGCAGAGAAAGGAGGACCCGTTGCTTCAGATCAACTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAG‑CGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTCGATATCCACCAGCGCCGCTGGGCCGGCACCTGAGGTGATTTTCTGCGGTACGATCAGCCGCAGGCCGTCGCCACG  >  NC_002947/4351716‑4352009

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.