New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4351863 =	42 (0.990)	3 (0.070)	3/250	NT	7.6%	coding (342/381 nt)	PP_3824	hypothetical protein
	?	NC_002947	4351938 =	32 (0.780)					coding (267/381 nt)	PP_3824	hypothetical protein

ATAAGCAGAGAAAGGAGGACCCGTTGCTTCAGATCAACTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAGCGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTCGATATCCACCAGCGCCGCTGGGCCGGCACCTGAGGTGATTTTCTGCGGTACGATCAGCCGCAGGCCGTCGCCACGCTGCTCTTCGGTCAGCGGGTCACGCGTATCGGCAAGCTTCTCCTTTACGCAGTCGGCATAGGCGCGTGGGCTCTTGC  >  NC_002947/4351791‑4352086                                                                                                                                                    |                                                                                                                                                     ataAGCAGAGAAAGGAGGACCCGTTGCTTCAGATCAACTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAGCGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTCGatat                                                                                                                                                     >  3:63089/1‑149 (MQ=255)   aaGCAGAGAAAGGAGGACCCGTTGCTTCAGATCAACTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAGCGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGACGCTGCCGCGCTTGTCTATATc                                                                                                                                                    >  6:241085/1‑148 (MQ=255)    aGCAGAGAAAGGAGGACCCGTTGCTTCAGATCAACTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAGCGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTCGATATcca                                                                                                                                                  <  3:254729/149‑1 (MQ=255)     tcgacggcctgcggctgatcgtaccgcagaaaatcacctcagttgccggcccagcggcgctggtggatATCGCCAAGGCGCAGCGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTCGATATccac                                                                                                                                                 >  4:18322‑M1/69‑149 (MQ=255)       agagAAAGGAGGACCCGTTGCTTCAGATCAACTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAGCGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTCGATATccacca                                                                                                                                               <  8:176576/149‑1 (MQ=255)        gagaAAGGAGGACCCGTTGCTTCAGATCAACTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAGCGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCGTGTCGAGTGCCACCAg                                                                                                                                              >  8:111440/1‑149 (MQ=255)             aggaggACCCGTTGCTTCAGATCAACTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAGCGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTCGATATCCACCAGcgccg                                                                                                                                         >  8:109654/1‑149 (MQ=255)                aggaCCCGTTGCTTCAGATCAACTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAGCGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTCGATATCCACCAGCGCCGCTg                                                                                                                                      <  7:237829/149‑1 (MQ=255)                          gCTTCAGATCAACTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAGCGGGAAGTTATTCAGCCGCTCGTGCAGTGTGATGCTGCTGCCGCTGCCGCGCTTGTCGATATCCACCAGCGCCGCTGGGCCGGCAc                                                                                                                             <  5:241085/148‑1 (MQ=255)                           cTTCAGATCAACTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAGCGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTCGATATCCACCAGCGCCGCTGGGCCGGCACCt                                                                                                                           >  7:210351/1‑149 (MQ=255)                                  tCAACTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAGCGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTCGATATCCACCAGCGCCGCTGGGCCGGCACCTGAGGTGa                                                                                                                    >  7:101015/1‑149 (MQ=255)                                    aaCTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAGCGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGACGCGCTTGTCGATATCCACCAGCGCCGCTGGGCCGGCACCTGAGGTGAtt                                                                                                                  >  6:52810/1‑149 (MQ=255)                                                  cATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAGCGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTCGATATCCACCAGCGCCGCTGGGCCGGCACCTGAGGTGATTTTCTGCGGTACGa                                                                                                     >  7:216348/1‑148 (MQ=255)                                                    ttGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAGCGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTCGATATCCACCAGCGCCGCTGGGCCGGCACCTGAGGTGATTTTCTGCGGTACGAt                                                                                                    >  3:97728/1‑147 (MQ=255)                                                    ttGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAGCGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTCGATATCCACCAGCGCCGCTGGGCCGGCACCTGAGGTGATTTTCTGCGGTACGAt                                                                                                    >  5:152151/1‑147 (MQ=255)                                                             cGCAGTGCGCACATCGCCAAGGCGCAGCGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTCGATATCCACCAGCGCCGCTGGGCCGGCACCTGAGGTGATTTTCTGCGGTACGATCAGCCg                                                                                              >  6:88671/1‑144 (MQ=255)                                                             cGCAGTGCGCACATCGCCAAGGCGCAGCGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTCGATATCCACCAGCGCCGCTGGGCCGGCACCTGAGGTGATTTTCTGCGGTACGATCAGCCg                                                                                              <  5:88671/144‑1 (MQ=255)                                                                   gtggatatcgacaagcgcggcagcggcagcagcatcaaactgcacgagcggctgaataacttcccgctgcgccttggcgatATCCACCAGCGCCGCTGGGCCGGCAACTGAGGTGATTTTCTGCGGTACGATCAGCCGCAGGCCGTcga                                                                                   >  4:18322‑M2/82‑148 (MQ=255)                                                                   gcgcACATCGCCAAGGCGCAGCGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTCGATATCCACCAGCGCCGCTGGGCCGGCACCTGAGGTGATTTTCTGCGGTACGATCAGCCGCAGGCCGTCGc                                                                                   >  5:141381/1‑149 (MQ=255)                                                                       acaTCGCCAAGGCGCAGCGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTCGATATCCACCAGCGCCGCTGGGCCGGCACCTGAGGTGATTTTCTGCGGTACGATCAGCCGCAGGCCGTCGCCACg                                                                               <  8:101015/149‑1 (MQ=255)                                                                           cgacaagcgcggcagcggcagcagcatcaaactgcacgagcggctgaataacttcccgctgcgccttggcgatATCCACCAGCGCCGCTGGGCCGGCACCTGAGGTGATTTTCTGCGGTACGATCAGCCGCAGGCCGTCGCCACgctgc                                                                           >  8:178118‑M2/74‑149 (MQ=255)                                                                              caagcgcggcagcggcagcagcatcaaactgcacgagcggctgaataacttcccgctgcgccttggcgatATCCACCAGCGCCGCTGGGCCGGCACCTGAGGTGATTTTCTGCGGTACGATCAGCCGCAGGCCGTCGCCACGCTGctct                                                                        >  3:99275‑M2/71‑149 (MQ=255)                                                                                 ggCGCAGCGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTCGATATCCACCAGCGCCGCTGGGCCGGCACCTGAGGTGATTTTCTGCGGTACGATCAGCCGCAGGCCGTCGCCACGCTGCTCTTCg                                                                     <  6:152151/149‑1 (MQ=255)                                                                                  gcgcAGCGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTCGATATCCACCAGCGCCGCTGGGCCGGCACCTGAGGTGATTTTCTGCGGTACGATCAGCCGCAGGCCGTCGCCACGCTGCTCTTCgg                                                                    >  3:10180/1‑149 (MQ=255)                                                                                         gggAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTCGATATCCACCAGCGCCGCTGGGCCGGCACCTGAGGTGATTTTCTGCGGTACGATCAGCCGCAGGCCGTCGCCACGCTGCTCTTCGGTCAGCgg                                                             <  7:109654/149‑1 (MQ=255)                                                                                                 aTTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTCGATATCCACCAGCGCCGCTGGGCCGGCACCTGAGGTGATTTTCTGCGGTACGATCAGCCGCAGGCCGTCGCCACGCTGCTCTTCGGTCAGCGGGTCAcgc                                                      <  8:210351/148‑1 (MQ=255)                                                                                                          cTCGTGCAGTTTGCTGCTGCGGCCGCTGCCGCGCTTGTCGATATCCCCCAGCGCCGCTGGGCCGGCACCTGAGGTGATTTTCTGCGGTACGATCAGCCGCAGGCCGTCGCCACGCTGCTCTTCGGTCAGCGGGTCACGCGTATCGGCaa                                            <  7:111440/149‑1 (MQ=255)                                                                                                          cTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTCGATATCCACCAGCGCCGCTGGGCCGGCACCTGAGGTGATTTTCTGCGGTACGATCAGCCGCAGGCCGTCGCCACGCTGCTCTTCGGTCAGCGGGTCACGCGTATCGGCaa                                            <  6:141381/149‑1 (MQ=255)                                                                                                          cTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTCGATATCCACCAGCGCCGCTGGGCCGGCACCTGAGGTGATTTTCTGCGGTACGATCAGCCGCAGGCCGTCGCCACGCTGCTCTTCGGTCAGCGGGTCACGCGTATCGGCaa                                            <  4:15342/149‑1 (MQ=255)                                                                                                          cTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTCGATATCCACCAGCGCCGCTGGGCCGGCACCTGAGGTGATTTTCTGCGGTACGATCAGCCGCAGGCCGTCGCCACGCTGCTCTTCGGTCAGCGGGTCACGCGTATCGGCaa                                            <  4:10180/149‑1 (MQ=255)                                                                                                             gTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTCGATATCCACCAGCGCCGCTGGGCCGGCACCTGAGGTGATTTTCTGCGGTACGATCAGCCGCAGGCCGTCGCCACGCTGCTCTTCGGTCAGCGGGTCACGCGTATTGGCAAGc                                          <  6:153537/148‑1 (MQ=255)                                                                                                                  gTTTGATGCTGCTGCCGCTGCCGCGCTTGTCGATATCCACCAGCGCCGCTGGGCCGGCACCTGAGGTGATTTTCTGCGGTACGATCAGCCGCAGGCCGTCGCCACGCTGCTCTTCGGTCAGCGGGTCACGCGTATCGGCAAGCTTCTcc                                    >  7:163777/1‑149 (MQ=255)                                                                                                                   tttGATGCTGCTGCCGCTGCCGCGCTTGTCGATATCCACCAGCGCCGCTGGGCCGGCACCTGAGGTGATTTTCTGCGGTACGATCAGCCGCAGGCCGTCGCCACGCTGCTCTTCGGTCAGCGGGTCACGCGTATCGGCAAGCTTCTCCt                                   >  5:14424/1‑149 (MQ=255)                                                                                                                       aTGCTGCTGCCGCTGCCGCGCTTGTCGATATCCACCAGCGCCGCTGGGCCGGCACCTGAGGTGATTTTCTGCGGTACGATCAGCCGCAGGCCGTCGCCACGCTGCTCTTCGGTCAGCGGGTCACGCGTATCGGCAAGCTTCTCCTTTa                                <  8:163777/148‑1 (MQ=255)                                                                                                                                ccgctgccgcGCTTGTCGATATCCACCAGCGCCGCTGGGCCGGCACCTGAGGTGATTTTCTGCGGTACGATCAGCCGCAGGCCGTCGCCACGCTGCTCTTCGGTCAGCGGGTCACGCGTATCGGCAAGc                                          <  8:34353/129‑1 (MQ=255)                                                                                                                                ccgctgccgcGCTTGTCGATATCCACCAGCGCCGCTGGGCCGGCACCTGAGGTGATTTTCTGCGGTACGATCAGCCGCAGGCCGTCGCCACGCTGCTCTTCGGTCAGCGGGTCACGCGTATCGGCAAGc                                          >  7:34353/1‑129 (MQ=255)                                                                                                                                ccgctgccgcGCTTGTCGATATCCACCAGCGCCGCTGGGCCGGCACCTGAGGTGATTTTCTGCGGTACGATCAGCCGCAGGCCGTCGCCACGATGCTCTTCGGTCAGCGGGTCACGCGTATCGGCAAGCTTCTCCTTTACGCAGTCgg                       <  1:48783/148‑1 (MQ=255)                                                                                                                                  gctgccgcGCTTGTCGATATCCACCAGCGCCGCTGGGCCGGCACCTGAGGTGATTTTCTGCGGTACGATCAGCCGCAGGCCGTCGCCACGCTGCTCTTCGGTCAGCGGGTCACGCGTATCGGCAAGCTTCTCCTTTACGCAGTCGGCAt                    <  1:130608/149‑1 (MQ=255)                                                                                                                                        gcgcTTGTCGATATCCACCAGCGCCGCTGGGCCGGCACCTGAGGTGATTTTCTGCGGTACGATCAGCCGCAGGCCGTCGCCACGCTGCTCTTCGGTCAGCGGGTCACGCGTATCGGCAAGCTTCTCCTTTACGCAGTCGGCATAGgcgc              >  7:26497/1‑149 (MQ=255)                                                                                                                                                 gatATCCACCAGCGCCGCTGGGCCGGCACCTGAGGTGATTTTCTGCGGTACGATCAGCCGCAGGCCGTCGCCACGCTGCTCTTCGGTCAGCGGGTCACGCGTATCGGCAAGCTTCTCCTTTACGCAGTCGGCATAGGCGCGTGGGctc      <  4:97728‑M2/145‑1 (MQ=255)                                                                                                                                                 gatATCCACCAGCGCCGCTGGGCCGGCACCTGAGGTGATTTTCTGCGGTACGATCAGCCGCAGGCCGTCGCCACGCTGCTCTTCGGTCAGCGGGTCACGCGTATCGGCAAGCTTCTCCTTTACGCAGTCGGCATAGGCGCGTGGGctc      <  2:52585‑M2/145‑1 (MQ=255)                                                                                                                                                    atCCACCAGCGCCGCTGGGCCGGCACCTGAGGTGATTTTCTGCGGTACGATCAGCCGCAGGCCGTCGCCACGCTGCTCTTCGGTCAGCGGGTCACGCGTATCGGCAAGCTTCTCCTTTACGCAGTCGGCATAGGCGCGTGGGCTCTTGc  <  4:63089/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                     ATAAGCAGAGAAAGGAGGACCCGTTGCTTCAGATCAACTTCCGGAGATGCATTGCGTTGCCGCAGTGCGCACATCGCCAAGGCGCAGCGGGAAGTTATTCAGCCGCTCGTGCAGTTTGATGCTGCTGCCGCTGCCGCGCTTGTCGATATCCACCAGCGCCGCTGGGCCGGCACCTGAGGTGATTTTCTGCGGTACGATCAGCCGCAGGCCGTCGCCACGCTGCTCTTCGGTCAGCGGGTCACGCGTATCGGCAAGCTTCTCCTTTACGCAGTCGGCATAGGCGCGTGGGCTCTTGC  >  NC_002947/4351791‑4352086

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.