New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4501809 =	42 (0.990)	4 (0.100)	4/244	NT	9.4%	coding (273/672 nt)	yccA	FtsH‑mediated proteolysis substrate/modulator
	?	NC_002947	4501859 =	37 (0.930)					coding (323/672 nt)	yccA	FtsH‑mediated proteolysis substrate/modulator

GTTGCCCAGCAGATGCGCGTCGGCTACCCGAACGTGTTCGTGGTGCTAATCGGCTTCTACGGGCTGTTCTTCCTTACCAACAAACTGCGTGATTCGGCCTGGGGCCTGGTGTCCACCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCATGACTGCGCTGGTGTTTGGTGGTCTGTCGGCCTACGTGCTGATCACCCGCAAGGACATGAGCTTCCTGAGTGGCTTC  >  NC_002947/4501663‑4501956                                                                                                                                                   |                                                                                                                                                    gaagctggcaacgagagcagccatcataacgtataagcccgcagtgatgaagccactcaggaagatcatgtccttgcgggtgatcagcacttaggccgacagaccaccaaacaccagcgcagtcatggcaaacgcggagctcactaCCt                                                                                                                                                   >  5:206352‑M1/147‑149 (MQ=255)    gCCCAGCAGATGCGCGTCGGCTACCCGAACGTGTTCGTGGTGCTAATCGGCTTCTACGGGCTGTTCTTCCTTACCAACAAACTGCGTGATTCGGCCTGGGGCCTGGTGTCCACCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCg                                                                                                                                                 <  5:16225/148‑1 (MQ=255)    gCCCAGCAGATGCGCGTCGGCTACCCGAACGTGTTCGTGGTGCTAATCGGCTTCTACGGGCTGTTCTTCCTTACCAACAAACTGCGTGATTCGGCCTGGGGCCTGGTGTCCACCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCg                                                                                                                                                 <  6:123719/148‑1 (MQ=255)     cccAGCAGATGCGCGTCGGCTACCCGAACGTGTTCGTGGTGCTAATCGGCTTCTACGGGCTGTTCTTCCTTACCAACAAACTGCGTGATTCGGCCTGGGGCCTGGTGTCCACCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCgg                                                                                                                                                <  7:146675/148‑1 (MQ=255)       cagcagATGCGCGTCGGCTACCCGAACGTGTTCGTGGTGCTAATCGGCTTCTACGGGCTGTTCTTCCTTACCAACAAACTGCGTGATTCGGCCTGGGGCCTGGTGTCCACCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCGGccc                                                                                                                                             >  5:89358/1‑149 (MQ=255)          aacgacagcgcccagcagaacgaagaagcccgcagtgatgaagccactcaggaagctcatgtccttgcgggtgatcagcacgtaggccgacagaccaccaaacaccagcgcagtcatggcaaacgcggagctcactaCCTCGGCCCGAt                                                                                                                                          <  3:23998‑M1/12‑1 (MQ=255)            gATGCGCGTCGGCTACCCGAACGTGTTCGTGGTGCTAATCGGCTTCTACGGGCTGTTCTTCCTTACCAACAAACTGCGTGATTCGGCCTGGGGCCTGGTGTCCACCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATcc                                                                                                                                        <  4:217116/149‑1 (MQ=255)              tGCGCGTCGGCTACCCGAACGTGTTCGTGGTGCTAATCGGCTTCTACGGGCTGTTCTTCCTTACCAACAAACTGCGTGATTCGGCCTGGGGCCTGGTGTCCACCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTc                                                                                                                                      <  5:230666/149‑1 (MQ=255)               gcgcGTCGGCTACGCGAACGTGTTCGTGGTGCTATTCGGCTTCTACGGGCTGTTCTTCCTTAGGAACAAACTGCGTGATTCTGACTGGGGCCTGGTGTCCACCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTc                                                                                                                                      <  5:246575/148‑1 (MQ=255)                  cgTCGGCTACCCGAACGTGTTCGTGGTGCTAATCGGCTTCTACGGGCTGTTCTTCCTTACCAACAAACTGCGTGATTCGGCCTGGGGCCTGGTGTCCACCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAAcc                                                                                                                                  <  6:215003/149‑1 (MQ=255)                       gCTACCCGAACGTGTTCGTGGTGCTAATCGGCTTCTACGGGCTGTTCTTCCTTACCAACAAACTGCGTGATTCGGCCTGGGGCCTGGTGTCCACCTTCGCGCTCACCGGTTTCATGGGGTTCATCCTCGGCCCGATCCTCAACCGttcc                                                                                                                             >  8:169224/1‑147 (MQ=255)                       gCTACCCGAACGTGTTCGTGGTGCTAATCGGCTTCTACGGGCTGTTCTTCCTTACCAACAAACTGCGTGATTCGGCCTGGGGCCTGGTGTCCACCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTAc                                                                                                                             <  2:234529/149‑1 (MQ=255)                       gCTACCCGAACGTGTTCGTGGTGCTAATCGGCTTCTACGGGCTGTTCTTCCTTACCAACAAACTGCGTGATTCGGCCTGGGGCCTGGTGTCCACCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTAc                                                                                                                             <  6:89358/149‑1 (MQ=255)                                  gtgtTCGTGGTGCTAATCGGCTTCTACGGGCTGTTCTTCCTTACCAACAAACTGCGTGATTCGGCCTGGGGCCTGGTGTCCACCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGc                                                                                                                  >  8:243280/1‑149 (MQ=255)                                    gtTCGTGGTGCTAATCGGCTTCTACGGGCTGTTCTTCCTTACCAACAAACTGCGTGATTCGGCCTGGGGCCTGGTGTCCACCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATg                                                                                                                    <  6:138253/145‑1 (MQ=255)                                    gtTCGTGGTGCTAATCGGCTTCTACGGGCTGTTCTTCCTTACCAACAAACTGCGTGATTCGGCCTGGGGCCTGGTGTCCACCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATg                                                                                                                    >  5:138253/1‑145 (MQ=255)                                       ccgcagtgatgaagccactcaggaagctcatgtccttgcgggtgatcagcacgtaggccgacagaccaccaaacaccagcgcagtcatggcaaacgcggagctcactaCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTg                                                                                                             <  5:71270‑M1/41‑1 (MQ=255)                                        gtggtgCTAATCGGCTTCTACGGGCTGTTCTTCCTTACCAACAAACTGCGTGATTCGGCCTGGGGCCTGGTGTCCACCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGc                                                                                                                       <  4:100980/138‑1 (MQ=255)                                        gtggtgCTAATCGGCTTCTACGGGCTGTTCTTCCTTACCAACAAACTGCGTGATTCGGCCTGGGGCCTGGTGTCCACCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGc                                                                                                                       >  3:100980/1‑138 (MQ=255)                                            tgCTAATCGGCTTCTACGGGCTGTTCTTCCTTACCAACAAACTGCGTGATTCGGCCTGGGGCCTGGTGTCCACCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGcc                                                                                                        >  1:41983/1‑149 (MQ=255)                                              cTAATCGGCTTCTACGGGCTGTTCTTCCTTACCAACAAACTGCGTGATTCGGCCTGGGGCCTGGTGTCCACCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGa                                                                                                      <  4:100747/149‑1 (MQ=255)                                                  aagccactcaggaagctaatgtacttgcgggtgatcagcacgtaggcctacagaccaccaaacaccagctcagtcatggaacacgcggagctcactaCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTa                                                                                                  >  2:154007‑M1/98‑149 (MQ=255)                                                   agccactcaggaagctcatgtccttgcgggtgatcagcacgtaggccgacagaccaccaaacaccagcgcagtcatggcaaacgcggagctcactaCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAg                                                                                                 >  6:71270‑M1/97‑149 (MQ=255)                                                    ggCTTCTACGGGCTGTTCTTCCTTACCAACAAACTGCGTGATTCGGCCTGGGGCCTGGTGTCCACCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGt                                                                                                <  2:41983/149‑1 (MQ=255)                                                     ccactcaggaagctcatgtccttgcgggtgatcagcacgtaggccgacagaccaccaaacaccagcgcagtcatggcaaacgcggagctcactaCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTg                                                                                               >  4:23998‑M1/95‑149 (MQ=255)                                                         cTACGGGCTGTTCTTCCTTACCAACAAACTGCGTGATTCGGCCTGGGGCCTGGTGTCCACCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAg                                                                                             <  7:243280/147‑1 (MQ=255)                                                              cgCTCTTCTTCCTTACCAACATACTGCGCGATTCGGCCTGTGGCCTTGAGTCCACCTTCGCTCTCACCGGTTTGATGGGCTTCATCCTCGGCCCGATCCTCAACCTTTCCCTGTGCATGGCCGGTGGGGCCGAGGTAGTGAGCTCcgcg                                                                                      <  6:81158/148‑1 (MQ=255)                                                                   ttcttcCTTACCAACAAACTGCGTGATTCGGCCTGGGGCCTGGTGTCCACCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGttt                                                                                   <  3:36432/147‑1 (MQ=255)                                                                      ttcCTTACCAACAAACTGCGTGATTCGGCCTGGGGCCTGGTGTCCACCTTTGCGCTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGa                                                                                                      <  8:117797/125‑1 (MQ=255)                                                                      ttcCTTACCAACAAACTGCGTGATTCGGCCTGGGGCCTGGTGTCCACCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGttt                                                                                   >  2:11549/1‑144 (MQ=255)                                                                      ttcCTTACCAACAAACTGCGTGATTCGGCCTGGGGCCTGGTGTCCACCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGttt                                                                                   <  1:11549/144‑1 (MQ=255)                                                                      ttcCTTACCAACAAACTGCGTGATTCGGCCTGGGGCCTGGTGTCCACCTTAGCGCTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGa                                                                                                      >  7:117797/1‑125 (MQ=255)                                                                             ccAACAAACTGCGTGATTCGGCCTGGGGCCTGGTGTCCACCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCATGACTgcg                                                                       >  8:57861/1‑149 (MQ=255)                                                                                 caaACTGCGTGATTCGGCCTGGGGCCTGGTGTCCACCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCATGACTGCGCTgg                                                                   >  8:138112/1‑149 (MQ=255)                                                                                      tGCGTGATTCGGCCTGGGGCCTGGTGTCCACCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCAt                                                                              <  8:245287/133‑1 (MQ=255)                                                                                      tGCGTGATTCGGCCTGGGGCCTGGTGTCCACCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCAt                                                                              >  7:245287/1‑133 (MQ=255)                                                                                                            ggTGTCCACCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCATGACTGCGCTGGTGTTTGGTGGTCTGTCGGCCTACGTGc                                        >  7:31010/1‑149 (MQ=255)                                                                                                             gtgtCCACCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCATGACTGCGCTGGTGTTTGGTGGTCTGTCGGCCTACGTGCt                                       >  8:37061/1‑149 (MQ=255)                                                                                                               gtCCACCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCATGACTGCGCTGGTGTTTGGTGGTCTGTCGGCCTACGTGCTGa                                     <  8:211039/149‑1 (MQ=255)                                                                                                                  cACCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGACGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCATGACTGCGCTGGTGTTTGGTGGTATGTCGGCCTACGTGCTGAtaa                                  >  8:208343/1‑147 (MQ=255)                                                                                                                   aCCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCAt                                                                              <  5:195985/104‑1 (MQ=255)                                                                                                                   aCCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCAt                                                                              >  6:195985/1‑104 (MQ=255)                                                                                                                         gcgcTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCATGACTGCGCTGGTGTTTGGTGGTCTGTCGGCCTACGTGCTGATCACCCGCaa                           <  8:31010/149‑1 (MQ=255)                                                                                                                         gcgcTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCATGACTGCGCTGGTGTTTGGTGGTCTGTCGGCCTACGTGCTGATCACCCGCaa                           <  7:57861/149‑1 (MQ=255)                                                                                                                           gcTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCATGACTGCGCTGGTGTTTGGTGGTCTGTCGGCCTACGTGCTGATCACCCGCAAg                          >  1:143260/1‑148 (MQ=255)                                                                                                                           gcTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCATGACTGCGCTGGTGTTTGGTGGTCTGTCGGCCTACGTGCTGATCACCCGCAAg                          >  7:73130/1‑148 (MQ=255)                                                                                                                               aCCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCATGACTGCGCTGGTGTTTGGTGGTCTGTCGTCCTACGTGCTGATCACCCGCAAGGACa                      >  4:237717/1‑148 (MQ=255)                                                                                                                               aCCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCATGACTGCGCTGGTGTTTGGTGGTCTGTCGGCCTACg                                           >  2:2410/1‑127 (MQ=255)                                                                                                                                 cGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCATGACTGCGCTGGTGtt                                                               >  4:104953/1‑105 (MQ=255)                                                                                                                                 cGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCATGACTGCGCTGGTGTTTGGTGGTCTGTCGGCCTACGTGCTGATCACCCGCAAGGACATGa                   <  7:138112/149‑1 (MQ=255)                                                                                                                                                  tCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGTCCGTTGGCGCCGAGGTATTTAGCTCCGCGTTTGCCATGACTGCGCTGGTGTTTGTTGGTCTGTCGGCCTACGTGCTGATCACCCGCAAGGACATGAGCTTCCTGAGTGGCTtc  <  7:208343/149‑1 (MQ=255)                                                                                                                                                  tCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCATGACTGCGCTGGTGTTTGGTGGTCTGTCGGCCTACGTGCTGATCACCCGCAAg                          <  3:38993/125‑1 (MQ=255)                                                                                                                                                  tCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCATGACTGCGCTGGTGTTTGGTGGTCTGTCGGCCTACGTGCTGATCACCCGCAAg                          >  4:38993/1‑125 (MQ=255)                                                                                                                                                   |                                                                                                                                                    GTTGCCCAGCAGATGCGCGTCGGCTACCCGAACGTGTTCGTGGTGCTAATCGGCTTCTACGGGCTGTTCTTCCTTACCAACAAACTGCGTGATTCGGCCTGGGGCCTGGTGTCCACCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCATGACTGCGCTGGTGTTTGGTGGTCTGTCGGCCTACGTGCTGATCACCCGCAAGGACATGAGCTTCCTGAGTGGCTTC  >  NC_002947/4501663‑4501956

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.