New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4501809 =	42 (0.990)	4 (0.100)	4/244	NT	9.4%	coding (273/672 nt)	yccA	FtsH‑mediated proteolysis substrate/modulator
	?	NC_002947	4501859 =	37 (0.930)					coding (323/672 nt)	yccA	FtsH‑mediated proteolysis substrate/modulator

TCGGCTTCTACGGGCTGTTCTTCCTTACCAACAAACTGCGTGATTCGGCCTGGGGCCTGGTGTCCACCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCATGACTGCGCTGGTGTTTGGTGGTCT‑GTCGGCCTACGTGCTGATCACCCGCAAGGACATGAGCTTCCTGAGTGGCTTCATCACTGCGGGCTTCTTCGTTCTGCTGGGTGCTGTCGTTGCCAGCTTCTTC  >  NC_002947/4501712‑4502007                                                                                                                                                    |                                                                                                                                                      aagccactcaggaagctaatgtacttgcgggtgatcagcacgtaggcctacagaccaccaaacaccagctcagtcatggaacacgcggagctcactaCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTa                                                                                                                                                      >  2:154007‑M1/98‑149 (MQ=255)  agccactcaggaagctcatgtccttgcgggtgatcagcacgtaggccgacagaccaccaaacaccagcgcagtcatggcaaacgcggagctcactaCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAg                                                                                                                                                     >  6:71270‑M1/97‑149 (MQ=255)   ggCTTCTACGGGCTGTTCTTCCTTACCAACAAACTGCGTGATTCGGCCTGGGGCCTGGTGTCCACCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGt                                                                                                                                                    <  2:41983/149‑1 (MQ=255)    ccactcaggaagctcatgtccttgcgggtgatcagcacgtaggccgacagaccaccaaacaccagcgcagtcatggcaaacgcggagctcactaCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTg                                                                                                                                                   >  4:23998‑M1/95‑149 (MQ=255)        cTACGGGCTGTTCTTCCTTACCAACAAACTGCGTGATTCGGCCTGGGGCCTGGTGTCCACCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAg                                                                                                                                                 <  7:243280/147‑1 (MQ=255)             cgCTCTTCTTCCTTACCAACATACTGCGCGATTCGGCCTGTGGCCTTGAGTCCACCTTCGCTCTCACCGGTTTGATGGGCTTCATCCTCGGCCCGATCCTCAACCTTTCCCTGTGCATGGCCGGTGGGGCCGAGGTAGTGAGCTCcgcg                                                                                                                                          <  6:81158/148‑1 (MQ=255)                  ttcttcCTTACCAACAAACTGCGTGATTCGGCCTGGGGCCTGGTGTCCACCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGttt                                                                                                                                       <  3:36432/147‑1 (MQ=255)                     ttcCTTACCAACAAACTGCGTGATTCGGCCTGGGGCCTGGTGTCCACCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGttt                                                                                                                                       <  1:11549/144‑1 (MQ=255)                     ttcCTTACCAACAAACTGCGTGATTCGGCCTGGGGCCTGGTGTCCACCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGttt                                                                                                                                       >  2:11549/1‑144 (MQ=255)                            ccAACAAACTGCGTGATTCGGCCTGGGGCCTGGTGTCCACCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCATGACTgcg                                                                                                                           >  8:57861/1‑149 (MQ=255)                                caaACTGCGTGATTCGGCCTGGGGCCTGGTGTCCACCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCATGACTGCGCTgg                                                                                                                       >  8:138112/1‑149 (MQ=255)                                     tGCGTGATTCGGCCTGGGGCCTGGTGTCCACCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCAt                                                                                                                                  <  8:245287/133‑1 (MQ=255)                                     tGCGTGATTCGGCCTGGGGCCTGGTGTCCACCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCAt                                                                                                                                  >  7:245287/1‑133 (MQ=255)                                                           ggTGTCCACCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCATGACTGCGCTGGTGTTTGGTGGTCT‑GTCGGCCTACGTGc                                                                                           >  7:31010/1‑149 (MQ=255)                                                            gtgtCCACCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCATGACTGCGCTGGTGTTTGGTGGTCT‑GTCGGCCTACGTGCt                                                                                          >  8:37061/1‑149 (MQ=255)                                                              gtCCACCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCATGACTGCGCTGGTGTTTGGTGGTCT‑GTCGGCCTACGTGCTGa                                                                                        <  8:211039/149‑1 (MQ=255)                                                                 cACCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGACGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCATGACTGCGCTGGTGTTTGGTGGTAT‑GTCGGCCTACGTGCTGAtaa                                                                                     >  8:208343/1‑147 (MQ=255)                                                                  aCCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCAt                                                                                                                                  >  6:195985/1‑104 (MQ=255)                                                                  aCCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCAt                                                                                                                                  <  5:195985/104‑1 (MQ=255)                                                                        gcgcTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCATGACTGCGCTGGTGTTTGGTGGTCT‑GTCGGCCTACGTGCTGATCACCCGCaa                                                                              <  7:57861/149‑1 (MQ=255)                                                                        gcgcTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCATGACTGCGCTGGTGTTTGGTGGTCT‑GTCGGCCTACGTGCTGATCACCCGCaa                                                                              <  8:31010/149‑1 (MQ=255)                                                                          gcTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCATGACTGCGCTGGTGTTTGGTGGTCT‑GTCGGCCTACGTGCTGATCACCCGCAAg                                                                             >  7:73130/1‑148 (MQ=255)                                                                          gcTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCATGACTGCGCTGGTGTTTGGTGGTCT‑GTCGGCCTACGTGCTGATCACCCGCAAg                                                                             >  1:143260/1‑148 (MQ=255)                                                                              aCCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCATGACTGCGCTGGTGTTTGGTGGTCT‑GTCGTCCTACGTGCTGATCACCCGCAAGGACa                                                                         >  4:237717/1‑148 (MQ=255)                                                                              aCCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCATGACTGCGCTGGTGTTTGGTGGTCT‑GTCGGCCTACg                                                                                              >  2:2410/1‑127 (MQ=255)                                                                                cGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCATGACTGCGCTGGTGtt                                                                                                                   >  4:104953/1‑105 (MQ=255)                                                                                cGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCATGACTGCGCTGGTGTTTGGTGGTCT‑GTCGGCCTACGTGCTGATCACCCGCAAGGACATGa                                                                      <  7:138112/149‑1 (MQ=255)                                                                                             cactacctcggcgccaccggccatgcccaggtaacggttgaggatcgggccgaggTAGTGAGCTCCGCGTTTGCCATGACTGCGCTGGTGTTTGGTGGTCT‑GTCGGCCTACGTGCTGATCACCCGCAAGGACATGAGCTTCCTGAGTgg                                                         >  4:23998‑M2/56‑149 (MQ=255)                                                                                               ctacctcggcgccaccggccatgcccaggtaacggttgaggatcgggccgaggTAGTGAGCTCCGCGTTTGCCATGACTGCGCTGGTGTTTGGTGGTCT‑GTCGGCCTACGTGCTGATCACCCGCAAGGACATGAGCTTCCTGAGTGGCt                                                       >  6:71270‑M2/54‑149 (MQ=255)                                                                                                tacctcggcgccaccggccatgcccaggtaacggttgaggatcgggccgaggTAGTGAGCTCCGCGTGTTCCATGACTGAGCTGGTGTTTGGTGGTCT‑GTAGGCCTACGTGCTGATCACCCGCAAGTACATTAGCTTCCTGAGTGGCtt                                                      >  2:154007‑M2/53‑149 (MQ=255)                                                                                                 tCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGTCCGTTGGCGCCGAGGTATTTAGCTCCGCGTTTGCCATGACTGCGCTGGTGTTTGTTGGTCT‑GTCGGCCTACGTGCTGATCACCCGCAAGGACATGAGCTTCCTGAGTGGCTtc                                                     <  7:208343/149‑1 (MQ=255)                                                                                                 tCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCATGACTGCGCTGGTGTTTGGTGGTCT‑GTCGGCCTACGTGCTGATCACCCGCAAg                                                                             <  3:38993/125‑1 (MQ=255)                                                                                                 tCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCATGACTGCGCTGGTGTTTGGTGGTCT‑GTCGGCCTACGTGCTGATCACCCGCAAg                                                                             >  4:38993/1‑125 (MQ=255)                                                                                                   CTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTAGCGCCGAGGTAGTGAGCTCCGCGTTTGCCATGACTGCGCTGGTGTTTGGTGGTCT‑GTCGGCCTACGTGCTGATCACCCGCAAGGACATGAGCTTCCTGAGTGGCTtcat                                                   <  5:97453‑M1/149‑1 (MQ=255)                                                                                                          cGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCATGACTGCGCTGGTTTTTGGTGGTCT‑GTCGGCCTACGTGCTGATCACCCGCAAGGACATGAGCTTCCTGAGTGGCTTCATCACTGCg                                            <  2:143260/149‑1 (MQ=255)                                                                                                           gATTCTGAACCGTTACCTGGGCATGGGCGGTGGGGGCGTGGTAGGTATGTCCGCGTTTGCCATGTCTGCGCTGGTGTTTTGGGGGCTCGTCGGCCTACGTGCTGATCACCCGCAAGGACATGAGCTTCCTGAGt                                                           <  1:59618/134‑1 (MQ=255)                                                                                                           gATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCATGACTGCGCTGGTGTTTGGTGGTCT‑GTCGGCCTACGTGCTGATCACCCGCAAGGACATGAGCTTCCTGAGt                                                           >  2:59618/1‑133 (MQ=255)                                                                                                           gATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCATGACTGCGCTGGTGTTTGGTGGTCT‑GTCGGCCTACGTGCTGATCACCCGCAAGGACATGAGCTTCCTGAGTGGCTTCATCACTGCgg                                           >  6:251548/1‑149 (MQ=255)                                                                                                           caccggccatgcccaggtaacggttgaggatcgggccgaggTAGTGAGCTCCGCGTTTGCCATGACTGCGCTGGTGTTTGGTGGTCT‑GTCGGCCTACGTGCTGATCACCCGCAAGGACATGAGCTTCCTGAGTGGCTTCATCACTGCgg                                           <  5:71270‑M2/108‑1 (MQ=255)                                                                                                                tCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCATGACTGCGCTGGTGTTTGGTGGTCT‑GTCGGCCTACGTGCTGATCACCCGCAAGGACATGAGCTTCCTGAGTGGCTTCATCACTGCGGGcttc                                      >  6:178449/1‑149 (MQ=255)                                                                                                                tCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCATGACTGCGCTGGTGTTTGGTGGTCT‑GTCGGCCTACGTGCTGATCACCCGCAAGGACATGAGCTTCCTGAGTGGCTTCATCACTGCGGGcttc                                      >  2:227847/1‑149 (MQ=255)                                                                                                                   aCCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCATGACTGCGCTGGTGTTTGGTGGTCT‑GTCGGCCTACGTGCTGATCACCCGCAAGGACATGAGCTTCCTGAGTGGCTTCATCACTGCGGGCttcttc                                   <  5:251548/149‑1 (MQ=255)                                                                                                                     cGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCATGACTGCGCTGGTGTTTGGTGGTCT‑GTCGGCCTACGTGCTGATCACCCGCAAGGACATGAGCTTCCTGAGTGGCTTCATCACTGCGGGCTTCTTCGt                                 >  5:38780/1‑149 (MQ=255)                                                                                                                           cTGGGCATGGCCGGTAGCGCCGAGGTAGTGAGCTCCGCGTTTGCCATGACTGCGCTGGTGTTTGGTGGTCT‑GTCGGCCTACGTGCTGATCACCCGCAAGGACATGAGCTTCCTGAGTGGCTTCATCACTGCGGGCTTCTTCGTTctgct                           <  6:97453/149‑1 (MQ=255)                                                                                                                                     ccGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCATGACTGCGCTGGTGTTTGGTGGTCT‑GTCGGCCTACGTGCTGATCACCCGCAAGGACATGAGCTTCCTGAGTGGCTTCATCACTGCGGGCTTCTTCGTTCTGCTGGGTGCTGTc                 <  3:237717/149‑1 (MQ=255)                                                                                                                                      cGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCATGACTGCGCTGGTGTTTGGTGGTCT‑GTCGGCCTACGTGCTGATCACCCGCAAGGACATGAGCTTCCTGAGTGGCTTCATCACTGCGGGCTTCTTCGTTCTGCTGGGTGCTGtat                >  1:231291/1‑147 (MQ=255)                                                                                                                                        atcgggccgaggTAGTGAGCTCCGCGTTTGCCATGACTGCGCTGGTGTTTGGTGGTCT‑GTCGGCCTACGTGCTGATCACCCGCAAGGACATGAGCTTCCTGAGTGGCTTCATCACTGCGGGCTTCTTCGTTCTGCTGGGCGCTGTCGtt              <  3:23998‑M2/137‑1 (MQ=255)                                                                                                                                                 aggTAGTGAGCTCCGCGTTTGCCATGACTGCGCTGGTGTTTGGTGGTCT‑GTCGGCCTAAGTGCTGATCACCCGCAAGGACATGATCTTCCTGAGTGGCTTCATCACTGCGGGCTTATACGTTATGATGGCTGCTCTCGTTGCCAGcttc     >  5:206352‑M2/4‑149 (MQ=255)                                                                                                                                                    tAGTGAGCTCCGCGTTTGCCATGACTGCGCTGGTGTTTGGTGGTCT‑GTCGGCCTACGTGCTGATCACCCGCAAGGACATGAGCTTCCTGAGTGGCTTCATCACTGCGGGCTTCTTCGTTCTGCTGGGTGCTGTCGTTGCCAGcttcttc  <  1:227847/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                      TCGGCTTCTACGGGCTGTTCTTCCTTACCAACAAACTGCGTGATTCGGCCTGGGGCCTGGTGTCCACCTTCGCGCTCACCGGTTTCATGGGCTTCATCCTCGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGTGGCGCCGAGGTAGTGAGCTCCGCGTTTGCCATGACTGCGCTGGTGTTTGGTGGTCT‑GTCGGCCTACGTGCTGATCACCCGCAAGGACATGAGCTTCCTGAGTGGCTTCATCACTGCGGGCTTCTTCGTTCTGCTGGGTGCTGTCGTTGCCAGCTTCTTC  >  NC_002947/4501712‑4502007

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.