New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4522668	34 (0.810)	3 (0.080)	3/244	NT	7.7%	coding (517/2226 nt)	idh	isocitrate dehydrogenase
	?	NC_002947	= 4522689	40 (1.000)					coding (538/2226 nt)	idh	isocitrate dehydrogenase

CGCGCCCGCTACGACCGCATCAAGGGCTCCGCCGTGAACCCGGTGCTGCGCGAAGGCAACTCCGACCGCCGCGCGCCGCTGTCGGTCAAGAACTACGCCCGCAAGCACCCACACAAGATGGGCGCCTGGGCCGCTGACTCCAAGTCGC‑ACGTTGCCCACATGACCC‑AGGGCGACTTCTACGGCAGCGAAAAAGCCGCACTGATCGAAGCTGACGACAGCCTGCGCATCGAGCTGGTCGGCAAAGACGGCAGCACCACCGTGCTGAAAGAAAAGACCGCCGTCAAAGCCGCCGAAG  >  NC_002947/4522521‑4522815                                                                                                                                                    |                                                                                                                                                      cgcgCCCGCTACGACCGCATCAAGGGCTCCGCCGTGAACCCGGTGCTGCGCGAAGGCAACTCCGACCGCCGCGCGCCGCTGTCGGTCAAGAACTACGCCCGCAAGCACCCACACAAGATGGGCGCCTGGGCCGCTGACTCCAAGTCGC‑a                                                                                                                                                     <  7:95707/149‑1 (MQ=255)  gcgcCCGCTACGACCGCATCAAGGGCTCCGCCGTGAACCCGGTGCTGCGCGAAGGCAACTCCGACCGCCGCGCGCCGCTGTCGGTCAAGAACTACGCCCGCAAGCACCCACACAAGATGGGCGCCTGGGCCGCTGACTCCAAGTCGC‑Ac                                                                                                                                                    <  7:192679/149‑1 (MQ=255)  ccgcCCGCTCAGACCGCATCATCGGCTACGCCGTGACCCCGGTGCTGCGCGCAGGCAACTACGCCCGCCGCGCGCCGCTGTCGGTCACTAACTACGCCCGCAAGCACCCACACAAGATGGGCGCCTGGGCCGCTGACTCCAAGTCGC‑Ac                                                                                                                                                    <  4:162875/148‑1 (MQ=255)       cGCTACGACCGCATCAAGGGCTCCGCCGTGAACCCGCTGCTGCGCGAAGGCAACTCCGACCGCCGCGCGCCGCTGTCGGTCAAGAACTACGCCCGCAAGCACCCACACAAGATGGGCGCCTGGGCCGCTGACTCCAAGTCGC‑ACGttcc                                                                                                                                               >  2:256216/1‑147 (MQ=255)            cGACCGCATCAAGGGCTCCGCCGTGAACCCGGTGCTGCGCGAAGGCAACTCCGACCGCCGCGCGCCGCTGTCGGTCAAGAACTACGCCCGCAAGCACCCACACAAGATGGGCGCCTGGGCCGCTGACTCCAAGTCGC‑ACGTTGCCca                                                                                                                                            <  2:202231/147‑1 (MQ=255)               ccGCATCAAGGGCTCCGCCGTGAACCCGGTGCTGCGCGAAGGCAACTCCGACCGCCGCGCGCCGCTGTCGGTCAAGAACTACGCCCGCAAGCACCCACACAAGATGGGCGCCTGGGCCGCTGACTCCAAGTCGC‑ACGTTGCCCACATGa                                                                                                                                       >  7:6054/1‑149 (MQ=255)                         ggCTCCGCCGTGAACCCGGTGCTGCGCGAAGGCAACTCCGACCGCCGCGCGCCGCTGTCGGTCAAGAACTACGCCCGCAAGCACCCACACAAGATGGGCGCCTGGGCCGCTGACTCCAAGTCGC‑ACGTTGCCCACATGACCC‑AGGgcga                                                                                                                            >  4:117784‑M2/1‑145 (MQ=255)                             ccgccgTGAACCCGGTGCTGCGCGAAGGCAACTCCGACCGCCGCGCGCCGCTGTCGGTCAAGAACTACGCCCGCAAGCACCCACACAAGATGGGCGCCTGGGCCGCTGACTCCAAGTCGC‑ACGTTGCCCACATGACCC‑AGGGCGACTTc                                                                                                                        <  1:258465/149‑1 (MQ=255)                              cgccgTGAACCCGGTGCTGCGCGAAGGCAACTCCGACCGCCGCGCGCCGCTGTCGGTCAAGAACTACGCCCGCAAGCACCCACACAAGATGGGCGCCTGGGCCGCTGACTCCAAGTCGCcctgggtcatgtgggcaacgtgcgacttgg                                                                                                                         <  1:111714‑M1/149‑31 (MQ=255)                                       cccGGTGCTGCGCGAAGGCAACTCCGACCGCCGCGCGCCGCTGTCGGTCAAGAACTACGCCCGCAAGCACCCACACAAGATGGGCGCCTGGGCCGCTGACTCCAAGTCGC‑ACGTTGCCCACATGACCC‑AGGGCGACTTCTACGGCAGc                                                                                                               >  5:244646/1‑148 (MQ=255)                                        ccGGTGCTGCGCGAAGGCAACTCCGACCGCCGCGCGCCGCTGTCGGTCAAGAACTACGCCCGCAAGCACCCACACAAGATGGGCGCCTGGGCCGCTGACTCCAAGTCGC‑ACGTTGCCCACATGACCC‑AGGGCGACTTCTACGGCAGCg                                                                                                              >  6:149464/1‑148 (MQ=255)                                        ccGGTGCTGCGCGAAGGCAACTCCGACCGCCGCGCGCCGCTGTCGGTCAAGAACTACGCCCGCAAGCACCCACACAAGATGGGCGCCTGGGCCGCTGACTCCAAGTCGC‑ACGTTGCCCACATGACCC‑AGGGCGACTTCTACGGCAGCg                                                                                                              >  4:76279/1‑148 (MQ=255)                                                     aaGGCAACTCCGACCGCCGCGCGCCGCTGTCGGTCAAGAACTACGCCCGCAAGCACCCACACAAGATGGGCGCCTGGGCCGCTGACTCCAAGTCGC‑ACGTTGCCCACATGACCC‑AGGGCGACTTCTACGGCAGCGAAAAAGCCGCACt                                                                                                 >  2:82634/1‑148 (MQ=255)                                                        gCAACTCCGACCGCCGCGCGCCGCTGTCGGTCAAGAACTACGCCCGCAAGCACCCACACAAGATGGGCGCCTGGGCCGCTGACTCCAAGTCGC‑ACGTTGCCCACATGACCC‑AGGGCGACTTCTACGGCAGCGAAAAAGCCGCACTGATc                                                                                             <  5:56683/149‑1 (MQ=255)                                                          aaCTCCGACCGCCGCGCGCCGCTGTCGGTCAAGAACTACGCCCGCAAGCACCCACACAAGATGGGCGCCTGGGCCGCTGACTCCAAGTCGC‑ACGTTGCCCACATGACCC‑AGGGCGACTTCTACGGCa                                                                                                                 <  7:234397/127‑1 (MQ=255)                                                          aaCTCCGACCGCCGCGCGCCGCTGTCGGTCAAGAACTACGCCCGCAAGCACCCACACAAGATGGGCGCCTGGGCCGCTGACTCCAAGTCGC‑ACGTTGCCCACATGACCC‑AGGGCGACTTCTACGGCa                                                                                                                 >  8:234397/1‑127 (MQ=255)                                                           aCTCCGACCGCCGCGCGCCGCTGTCGGTCAAGAACTACGCCCGCAAGCACCCACACAAGATGGGCGCCTGGGCCGCTGACTCCAAGTCGC‑ACGTTGCCCACATGACCC‑AGGGCGACTTCTACGGCAGCGAAAAAGCCGCACTGATCGaa                                                                                          <  6:244646/149‑1 (MQ=255)                                                            cTCCGACCGCCGCGCGCCGCTGTCGGTCAAGAACTACGCCCGCAAGCACCCACACAAGATGGGCGCCTGGGCCGCTGACTCCAAGTCGC                                                                                                                                                       >  2:89120‑M1/1‑89 (MQ=255)                                                            cTCCGACCGCCGCGCGCCGCTGTCGGTCAAGAACTACGCCCGCAAGCACCCACACAAGATGGGCGCCTGGGCCGCTGACTCCAAGTCGC                                                                                                                                                       <  1:89120‑M1/89‑1 (MQ=255)                                                                   cgccgcGCGCCGCTGTCGGTCAAGAACTACGCCCGCAAGCACCCACACAAGATGGGCGCCTGGGCCGCTGACTCCAAGTCGC‑ACGTTGCCCACATGACCC‑AGGGCGACTTCTACGGCAGCGAAAAAGCCGCACTGATCGAAGCTgacga                                                                                  <  1:82634/149‑1 (MQ=255)                                                                     ccgcGCGCCGCTGTCGGTCTAGAACTACGCCCGCAAGCACCCACACAAGATTGGCGGCTGTGCCGCTGACTCCAAGTCGC‑TCGTTGCCCACATGACCC‑AGGGCGACTTCTACTGCAGAGAAAAAGCCGCACTTATCGATGCTGACGACa                                                                                <  6:129268/149‑1 (MQ=255)                                                                       gcgcgcCGCTGTCGGTCAAGAACTACGCCCGCAAGCACCCACACAAGATGGGCGCCTGGGCCGCTGACTCCAAGTCGCcctgggtcatgtgggcaacgtgcgacttg                                                                                                                          <  4:53520‑M1/107‑30 (MQ=255)                                                                       gcgcgcCGCTGTCGGTCAAGAACTACGCCCGCAAGCACCCACACAAGATGGGCGCCTGGGCCGCTGACTCCAAGTCGCcctgggtcatgtgggcaacgtgcgacttg                                                                                                                          >  3:53520‑M1/1‑78 (MQ=255)                                                                                        aaGAACTACGCCCGCAAGCACCCACACAAGATGGGCGCCTGGGCCGCTGACTCCAAGTCGC‑ACGTTGCCCACATGACCC‑AGGGCGACTTCTACGGCAGCGAAAAAGCCGCACTGATCGAAGCTGACGACAGCCTGCGCATCGAGCTGGt                                                             >  6:154062/1‑149 (MQ=255)                                                                                         aGAACTACGCCCGCAAGCACCCACACAAGATGGGCGCCTGGGCCGCTGACTCCAAGTCGC‑ACGTTGCCCACATGACCC‑AGGGCGACTTCTACGGCAGCGAAAAAGCCGCACTGATCGAAGCTGACGACAGCCTGCGCATCGAGCTGGTc                                                            <  5:154062/149‑1 (MQ=255)                                                                                           aaCTACGCCCGCAAGCACCCACACAAGATGGGCGCCTGGGCCGCTGACTCCAAGTCGC‑ACGTTGCCCACATGACCC‑AGGGCGACTTCTACGGCAGCGAAAAAGCCGCACTGATCGAAGCTGACGACAGCCTGCGCATCGAGCTGGTCgg                                                          >  3:5768/1‑149 (MQ=255)                                                                                              tACGCCCGCAAGCACCCACACAAGATGGGCGCCTGGGCCGCTGACTCCAAGTCGC‑ACGTTGCCCACATGACCC‑AGGGGGACTACTACAGCAGCGAAAAAGCCGCACTGATCGAAGCTGACGACAGCCTGCGCATCGAGCTGGTCGGCa                                                        >  1:86348/1‑148 (MQ=255)                                                                                                                cacaAGATGGGCGCCTGGGCCGCTGACTCCAAGTCGCGACGTTGCCCACATGACCC‑AGGGCGACTTCTACGGCAGCGAAAAAGCCGCACTGATCGAAGCTGACGACAGCCTgc                                                                          >  1:48483/1‑113 (MQ=255)                                                                                                                cacaAGATGGGCGCCTGGGCCGCTGACTCCAAGTCGC‑ACGTTGCCCACATGACCC‑AGGGCGACTTCTACGGCAGCGAAAAAGCCGCACTGATCGAAGCTGACGACAGCCTgc                                                                          <  2:48483/112‑1 (MQ=255)                                                                                                                 acaAGATGGGCGCCTGGGCCGCTGACTCCAAGTCGC‑ACGTTGCCCACATGACCC‑AGGGCGACTTCTACGGCAGCGAAAAAGCCGCACTGATCGAAGCTGACGACAGCCTgc                                                                          >  3:159079/1‑111 (MQ=255)                                                                                                                 acaAGATGGGCGCCTGGGCCGCTGACTCCAAGTCGC‑ACGTTGCCCACATGACCC‑AGGGCGACTTCTACGGCAGCGAAAAAGCCGCACTGATCGAAGCTGACGACAGCCTgc                                                                          <  4:159079/111‑1 (MQ=255)                                                                                                                       tGGGCGCCTGTGCAGCTGACTCCAAGTCGC‑ACGTTGCCCACATGACCC‑AGGGCGACTTCTACGGCAGCGAAAAAGCCGCACTGATCGAAGCTGACGACAGCCTGCGCATCGAGCTGGTCGGCAAAGACGGCAGCACCACCGTGCTgaaa                              <  6:184703/149‑1 (MQ=255)                                                                                                                       tGGGCGCCTGGGCCGCTGACTCCAAGTCGC‑ACGTTGCCCACATGACCC‑AGGGCGACTTCTACGGCAGCGAAAAAGCCGCACTGATCGAAGCTGACGACAGCCTGCGCATCGAGCTGGTCGGCAAAGACGGCAGCACCACCGTGCTgaaa                              <  2:125198/149‑1 (MQ=255)                                                                                                                         ggCGCCTGGGCCGCTGACTCCAAGTCGC‑ACGTTGCCCACATGACCC‑AGGGCGACTTCTACGGCAGCGAAAAAGCCGCACTGATCGAAGCTGACGACAGCCTGCGCATCGAGCTGGTCGGCAAAGACGGCAGCACCACCGTGCTgaaaga                            <  2:135185/149‑1 (MQ=255)                                                                                                                             ccTGGGCCGCTGACTCCAAGTCGC‑ACGTTGCCCACATGACCC‑AGGGCGACTTCTACGGCAGCGAAAAAGCCGCACTGATCGAAGCTGACGACCGCCTGCGCATCGAGCTGGTCGGCAAAGACGGCAGCACCACCGTGCTgaaagaa                           >  4:165555/1‑146 (MQ=255)                                                                                                                                gggCCGCTGACTCCAAGTCGC‑ACGTTGCCCACATGACCC‑AGGGCGACTTCTACGGCAGCGAAAAAGCCGCACTGATCGAAGCTGACGACAGCCTGCGCATCGAGCTGGTCGGCAAAGACGGCAGCACCACCATGCTGAAAGAAAAGAcc                     >  7:26071/1‑149 (MQ=255)                                                                                                                                 ggCCGCTGACTCCAAGTCGC‑ACGTTGCCCACATGACCC‑AGGGCGACTTCTACGGCAGCGAAAAAGCCGCACTGATCGAAGCTGACGACAGCCTGCGCATCGAGCTGGTCGGCAAAGACGGCAGCACCACCGTGCTGAAAGAAAAGAccg                    <  3:76279/149‑1 (MQ=255)                                                                                                                                   ccGCTGACTCCAAGTCGC‑ACGTTGCCCACATGACCC‑AGGGCGACTTCTACGGCAGCGAAAAAGCCGCACTGATCGAAGCTGACGACAGCCTGCGCATc                                                                     <  4:32656/98‑1 (MQ=255)                                                                                                                                   ccGCTGACTCCAAGTCGC‑ACGTTGCCCACATGACCC‑AGGGCGACTTCTACGGCAGCGAAAAAGCCGCACTGATCGAAGCTGACGACAGCCTGCGCATc                                                                     >  3:32656/1‑98 (MQ=255)                                                                                                                                      cTGACTCCAAGTCGC‑ACGTTGCCCACATGACCC‑AGGGCGACTTCTACGGCAGCGAAAAAGCCGCACTGATCGAAGCTGACGACAGCCTGCGCATCGAGCTGGTCGGCAAAGACGGCAGCACCACCGTGCTgaaaga                            <  4:205733/136‑1 (MQ=255)                                                                                                                                      cTGACTCCAAGTCGC‑ACGTTGCCCACATGACCC‑AGGGCGACTTCTACGGCAGCGAAAAAGCCGCACTGATCGAAGCTGACGACAGCCTGCGCATCGAGCTGGTCGGCAAAGACGGCAGCACCACCGTGCTgaaaga                            >  3:205733/1‑136 (MQ=255)                                                                                                                                            ccAAGTCGC‑ACGTTGCCCACATGACCC‑AGGgcgacttggagtcagcggcccaggcgcccatcttgtgtgggtgcttgcgggcgtagttcttgaccgacagcggcgcgcggcggtcggagttgccttcgcgcagcaccgggttcacggcg         <  1:111714‑M2/149‑120 (MQ=255)                                                                                                                                             cAAGTCGC‑ACGTTGCCCACATGACCCGAGGGCGACTTCTACGGCAGCGAAAAAGCCGCACTGATCGAAGCTGACGACAGCCTGCGCATCGAGCTGGTCGGCAAAGACGGCAGCACCACCGTGCTGAAAGAAAAGACCGCCGTCAAAgcc         >  1:3810/1‑149 (MQ=255)                                                                                                                                             cAAGTCGC‑ACGTTGCCCACATGACCC‑AGGgcgacttggagtcagcggcccaggcgcccatcttgtgtgggtgcttgcgggcgtagttcttgaccgacagcggcgcgc                                                  <  4:53520‑M2/107‑79 (MQ=255)                                                                                                                                             cAAGTCGC‑ACGTTGCCCACATGACCC‑AGGgcgacttggagtcagcggcccaggcgcccatcttgtgtgggtgcttgcgggcgtagttcttgaccgacagcggcgcgc                                                  >  3:53520‑M2/1‑29 (MQ=255)                                                                                                                                             cAAGTCGC‑ACGTTGCCCACATGACCC‑AGGGCGACTTCTACGGCAGCGAAAAAGCCGCACTTATCGAAGCTGACGACAGCCTGCGCATCGAGCTGGTCGGCAAAGACGGCAGCACCACCGTGCTGAAAGAAAAGACCGCCGTCAAAgccg        <  6:40028/149‑1 (MQ=255)                                                                                                                                             cAAGTCGC‑ACGTTCCCCACATGACCC‑ATGGCGACTTCTACGGCAGCGAAAAAGCCGCACTGATCGAAGCTGACGACATCCTGCGCATCGAGCTGGTCGGCAAAGACGGCAGCACCACCGTGCTGAAAGAAAAGACCGCCGTCAAAgcc         <  3:197900/148‑1 (MQ=255)                                                                                                                                                gTCGC‑ACGTTGCCCACATGACCC‑AGGGCGACTTCTACGGCAGCGAAAAAGCCGCACTGATCGAAGCTGACGACAGCCTGCGCATCGAGCTGGTCGGCAAAGACGGCAGCACCACCGTGCTGAAAGAAAAGACCGCCGTCAAAGccgccg     <  7:116960/149‑1 (MQ=255)                                                                                                                                                 tCGCcctgggtcatgtgggcaacgtgcgacttggagtcagcggcccaggcgcccatcttgtgtgggtgcttgcgggcgtagttcttgaccgacagcggcgcgcggcggtcggagttgccttcgcgcagcaccgggttcacggcggagcc      >  4:117784‑M1/1‑4 (MQ=255)                                                                                                                                                 tCGC‑ACGTTGCCCACATGACCC‑AGGGCGACTTCTACGGCAGCGAAAAAGCCGCACTGATCGAAGCTGACGACAGCCTGCGCATCGAGCTGGTCGGCAAAGACGGCAGCACCACCGTGCTGAAAGAAAAGACCGCCGTCAAAGccgccg     >  1:270142/1‑148 (MQ=255)                                                                                                                                                   gC‑ACGTTGCCCACATGACCC‑AGGGCGACTTCTACGGCAGCGAAAAAGCCGCACTGATCGAAGCTGACGACAGCCTGCGCATCGAGCTGGTCGGCAAAGACGGCAGCACCACCGTGCTGAAAGAAAAGACCGCCGTCAAAGCCGCCGaa   <  2:3810/148‑1 (MQ=255)                                                                                                                                                   gC‑ACGTTGCCCACATGACCC‑AGGGCGACTTCTACGGCAGCGAAAAAGCCGCACTGATCGAAGCTGACGACAGCCTGCGCATCGAGCTGGTCGGCAAAGACGGCAGCACCACCGTGCTGAAAGAAAAGACCGCCGTCAAAGCCGCCGaa   <  2:270142/148‑1 (MQ=255)                                                                                                                                                   gC‑ACGTTGCCCACATGACCC‑AGGGCGACTTCTACGGCAGCGAAAAAGCCGCACTGATCGAAGCTGACGACAGCCTGCGCATCGAGCTGGTCGGCAAAGACGGCAGCACCACCGTGCTGAAAGAAAAGACCGCCGTCAAAGCCGCCGAAg  >  5:23281/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                      CGCGCCCGCTACGACCGCATCAAGGGCTCCGCCGTGAACCCGGTGCTGCGCGAAGGCAACTCCGACCGCCGCGCGCCGCTGTCGGTCAAGAACTACGCCCGCAAGCACCCACACAAGATGGGCGCCTGGGCCGCTGACTCCAAGTCGC‑ACGTTGCCCACATGACCC‑AGGGCGACTTCTACGGCAGCGAAAAAGCCGCACTGATCGAAGCTGACGACAGCCTGCGCATCGAGCTGGTCGGCAAAGACGGCAGCACCACCGTGCTGAAAGAAAAGACCGCCGTCAAAGCCGCCGAAG  >  NC_002947/4522521‑4522815

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.