New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5293930 =	34 (0.810)	3 (0.070)	3/246	NT	7.9%	coding (457/1527 nt)	mmsA‑II	methylmalonate‑semialdehyde dehydrogenase
	?	NC_002947	5293986 =	38 (0.940)					coding (401/1527 nt)	mmsA‑II	methylmalonate‑semialdehyde dehydrogenase

CGCCAGCTCGACCAGAAGCATGGTCGACAGCGGATCCTGCTCGGATGGTTTGAGCACGAAGGTGTTGCCGCAGACGATGGCCATGGGGAACATCCACAGCGGGATCATTGCCGGGAAGTTGAACGGGGTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGACCACTTCCAGGCCGCGGAAGATATCGCCTTCAGCGTCGGCCAGGG  >  NC_002947/5293787‑5294073                                                                                                                                                |                                                                                                                                                atccgcgaacacaccaaacgcattgcccaggtgctcagcgccgagcagggcaagaccctggccgacgctgaaggcgatatcttccgcggcctggaagtggtcgagcacgctgcatccattggcaccctgcaaatgggcgaattCGCCGa                                                                                                                                            >  8:153954‑M1/144‑149 (MQ=255)  gcCAGCTCGACCAGAAGCATGGTCGACAGCGGATCCTGCTCGGATGGTTTGAGCACGAAGGTGTTGCCGCAGACGATGGCCATGGGGAACATCCACAGCGGGATCATTGCCGGGAAGTTGAACGGGGTGATGCCAGCGCATACGCCGAt                                                                                                                                           <  5:22670/149‑1 (MQ=255)          gACCAGAAGCATGGTCGACAGCGGATCCTGCTCGGATGGTTTGAGCACGAAGGTGTTGCCGCAGACGATGGCCATGGGGAACATCCACAGCGGGATCATTGCCGGGAAGTTGAACGGGGTGATGCCAGCGCATACGCCGAt                                                                                                                                           >  4:249749/1‑141 (MQ=255)          gACCAGAAGCATGGTCGACAGCGGATCCTGCTCGGATGGTTTGAGCACGAAGGTGTTGCCGCAGACGATGGCCATGGGGAACATCCACAGCGGGATCATTGCCGGGAAGTTGAACGGGGTGATGCCAGCGCATACGCCGAt                                                                                                                                           <  3:249749/141‑1 (MQ=255)                 aGCATGGTCGACAGCGGATCCTGCTCGGATGGTTTGAGCACGAAGGTGTTGCCGCAGACGATGGCCATGGGGAACATCCACAGCGGGATCATTGCCGGGAAGTTGAACGGGGTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGgt                                                                                                                            <  3:246357/149‑1 (MQ=255)                     tGGTCGACAGCGGATCCTGCTCGGATGGTTTGAGCACGAAGGTGTTGCCGCAGACGATGGCCATGGGGAACATCCACAGCGGGATCATTGCCGGGAAGTTGAACGGGGTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAg                                                                                                                        <  1:236322/149‑1 (MQ=255)                           ccaggtgctcagcgccgagcagggcaagaccctggccgacgctgaaggcgatatcttccgcggcctggaagtggtcgagcacgctgcatccattggcaccctgcaaatgggcgaattCGCCGa                                                                                                                                            >  1:207759‑M1/118‑123 (MQ=255)                           ccaggtgctcagcgccgagcagggcaagaccctggccgacgctgaaggcgatatcttccgcggcctggaagtggtcgagcacgctgcatccattggcaccctgcaaatgggcgaattCGCCGa                                                                                                                                            <  2:207759‑M1/6‑1 (MQ=255)                              gCGGATCCTGCTCGGATGGTTTGAGCACGAAGGTGTTGCCGCAGACGATGGCCATGGGGAACATCCACAGCGGGATCATTGCCGGGAAGTTGAACGGGGTGATGCCAGCGCATACGCCGATCgg                                                                                                                                        >  2:230466/1‑124 (MQ=255)                                      gcgccgagcagggcaagaccctggccgacgctgaaggcgatatcttccgcggcctggaagtggtcgagcacgctgcatccattggcaccctgcaaatgggcgaattCGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGc                                                                                                       <  6:26395‑M1/43‑1 (MQ=255)                                         tCGGATGGTTTGAGCACGAAGGTGTTGCCGCAGACGATGGCCATGGGGAACATCCACAGCGGGATCATTGCCGGGAAGTTGAACGGGGTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGAc                                                                                                    >  4:257601/1‑149 (MQ=255)                                         tCGGATGGTTTGAGCACGAAGGTGTTGCCGCAGACGATGGCCATGGGGAACATCCACAGCGGGATCATTGCCGGGAAGTTGAACGGGGTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGAc                                                                                                    >  1:107075/1‑149 (MQ=255)                                          cgagcagggcaagaccctggccgacgctgaaggcgatatcttccgcggcctggaagtggtcgagcacgctgcatccattggcaccctgcaaatgggcgaattc                                                                                                                                                 <  6:236571‑M1/1‑1 (MQ=255)                                          cgagcagggcaagaccctggccgacgctgaaggcgatatcttccgcggcctggaagtggtcgagcacgctgcatccattggcaccctgcaaatgggcgaattc                                                                                                                                                 >  5:236571‑M1/103‑103 (MQ=255)                                             aTGGTTTGAGCACGAAGGTGTTGCCGCAGACGATGGCCATGGGGAACATCCACAGCGGGATCATTGCCGGGAAGTTGAACGGGGTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTtc                                                                                                >  7:160454/1‑149 (MQ=255)                                               ggTTTGAGCACGAAGGTGTTGCCGCAGACGATGGCCATGGGGAACATCCACAGCGGGATCATTGCCGGGAAGTTGAACGGGGTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCg                                                                                                      <  3:237721/141‑1 (MQ=255)                                               ggTTTGAGCACGAAGGTGTTGCCGCAGACGATGGCCATGGGGAACATCCACAGCGGGATCATTGCCGGGAAGTTGAACGGGGTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCg                                                                                                      >  4:237721/1‑141 (MQ=255)                                                  gcaagaccctggccgacgctgaaggcgatatcttccgcggcctggaagtggtcgagcacgctgcatccattggcaccctgcaaatgggcgaattCGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCTCGGc                                                                                           >  5:26395‑M1/95‑149 (MQ=255)                                                     aGCACGAAGGTGTTGCCGCAGACGATGGCCATGGGGAACATCCACAGCGGGATCATT‑CCGGGAAGTTGAACGGGGTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAAt                                                                                       <  2:58939/149‑1 (MQ=255)                                                          gAAGGTGTTGCCGCAGACGATGGCCATGGGGAACATCCACAGCGGGATCATTGCCGGGAAGTTGAACGGGGTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGc                                                                                   >  3:219256/1‑149 (MQ=255)                                                               cgacgctgaaggcgatatcttccgcggcctggaagtggtcgagcacgctgcatccattggcaccctgcaaatgggcgaattCGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCAtt                                                                              >  3:106762‑M1/82‑149 (MQ=255)                                                                         gACGATGGCCATGGGGAACATCCACAGCGGGATCATTGCCGGGAAGTTGAACGGGGTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGc                                                                    <  3:257601/149‑1 (MQ=255)                                                                            gATGGCCATGGGGAACATCCACAGCGGGATCATTGCCGGGAAGTTGAACGGGGTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCaa                                                                 >  4:252646/1‑149 (MQ=255)                                                                                 ccATGGGGAACATCCACAGCGGGATCATTGCCGGGAAGTTGAACGGGGTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGAt                                                            <  5:26804/149‑1 (MQ=255)                                                                                      gggAACATCCACAGCGGGATCATTGCCGGGAAGTTGAACGGGGTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAg                                                        <  8:160454/148‑1 (MQ=255)                                                                                        gAACATCCACAGCGGGATCATTGCCGGGAAGTTGAACGGGGTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGt                                                     >  1:193973/1‑149 (MQ=255)                                                                                            aTCCACAGCGGGATCATTGCCGGGAAGTTGAACGGGGTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGTGTGCTc                                                 >  5:218564/1‑149 (MQ=255)                                                                                                     gggATCATTGCCGGGAAGTTGAACGGGGTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGACCACTTc                                        <  8:235708/149‑1 (MQ=255)                                                                                                       gATCATTGCCGGGAAGTTGAACGGGGTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGc                                                       <  6:253662/132‑1 (MQ=255)                                                                                                       gATCATTGCCGGGAAGTTGAACGGGGTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGc                                                       >  5:253662/1‑132 (MQ=255)                                                                                                         tCATTGCCGGGAAGTTGAACGGGGTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAg                                                        >  2:115114/1‑129 (MQ=255)                                                                                                         tCATTGCCGGGAAGTTGAACGGGGTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAg                                                        <  1:115114/129‑1 (MQ=255)                                                                                                            ttGCCGGGAAGTTGAACGGGGTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGACCACTTCCAGGCcg                                 >  4:224093/1‑149 (MQ=255)                                                                                                                 gggAAGTTGAACGGGGTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGACCACTTCCAGGCCGCGGaa                            <  4:219256/149‑1 (MQ=255)                                                                                                                       ttGAACGGGGTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGACCACTTCCAGGCCGCGGAAGATATc                      >  2:69824/1‑149 (MQ=255)                                                                                                                        tGAACGGGGTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCCCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGACCACTTCCAGGCcgcg                               <  7:244530/139‑1 (MQ=255)                                                                                                                        tGAACGGGGTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCACGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGACCACTTCCAGGCcgcg                               >  8:244530/1‑139 (MQ=255)                                                                                                                         gAACGGGGTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGACCACTTCCAGGCCGCGGAAGATATCg                     <  3:224093/148‑1 (MQ=255)                                                                                                                             ggggTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGACCACTTCCAGGCCGCGGAAGATATCGCCTTc                <  1:69824/149‑1 (MQ=255)                                                                                                                               ggTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGACCACTTCCAGGCCGCGGAAGATATCGCCTTCAg              >  4:194402/1‑149 (MQ=255)                                                                                                                                 tGATGCCAGCGCATACCCCGATCGGCAGGAGCAAGCTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGACCACTTCCAGGCCGCGGAAGATATCGCCTTCAGCg            >  2:38203/1‑149 (MQ=255)                                                                                                                                       cAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGACCACTTCCAGGCCGCGGAAGATATCGCCTTCAGCGTCGGcc      <  3:252646/149‑1 (MQ=255)                                                                                                                                            cATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGACCACTTCCAGGCCGCGGAAGATATCGCCTTCAGCGTCGGCCAggg  >  7:133701/1‑148 (MQ=255)                                                                                                                                                |                                                                                                                                                CGCCAGCTCGACCAGAAGCATGGTCGACAGCGGATCCTGCTCGGATGGTTTGAGCACGAAGGTGTTGCCGCAGACGATGGCCATGGGGAACATCCACAGCGGGATCATTGCCGGGAAGTTGAACGGGGTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGACCACTTCCAGGCCGCGGAAGATATCGCCTTCAGCGTCGGCCAGGG  >  NC_002947/5293787‑5294073

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.