New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5293930 =	34 (0.810)	3 (0.070)	3/246	NT	7.9%	coding (457/1527 nt)	mmsA‑II	methylmalonate‑semialdehyde dehydrogenase
	?	NC_002947	5293986 =	38 (0.940)					coding (401/1527 nt)	mmsA‑II	methylmalonate‑semialdehyde dehydrogenase

AGCACGAAGGTGTTGCCGCAGACGATGGCCATGGGGAACATCCACAGCGGGATCATTGCCGGGAAGTTGAACGGGGTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGACCACTTCCAGGCCGCGGAAGATATCGCCTTCAGCGTCGGCCAGGGTCTTGCCCTGCTCGGCGCTGAGCACCTGGGCAATGCGTTTGGTGTGTTCGCGGAT  >  NC_002947/5293839‑5294128                                                                                                                                                    |                                                                                                                                               aGCACGAAGGTGTTGCCGCAGACGATGGCCATGGGGAACATCCACAGCGGGATCATT‑CCGGGAAGTTGAACGGGGTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAAt                                                                                                                                              <  2:58939/149‑1 (MQ=255)      gAAGGTGTTGCCGCAGACGATGGCCATGGGGAACATCCACAGCGGGATCATTGCCGGGAAGTTGAACGGGGTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGc                                                                                                                                          >  3:219256/1‑149 (MQ=255)           cgacgctgaaggcgatatcttccgcggcctggaagtggtcgagcacgctgcatccattggcaccctgcaaatgggcgaattCGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCAtt                                                                                                                                     >  3:106762‑M1/82‑149 (MQ=255)                     gACGATGGCCATGGGGAACATCCACAGCGGGATCATTGCCGGGAAGTTGAACGGGGTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGc                                                                                                                           <  3:257601/149‑1 (MQ=255)                        gATGGCCATGGGGAACATCCACAGCGGGATCATTGCCGGGAAGTTGAACGGGGTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCaa                                                                                                                        >  4:252646/1‑149 (MQ=255)                             ccATGGGGAACATCCACAGCGGGATCATTGCCGGGAAGTTGAACGGGGTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGAt                                                                                                                   <  5:26804/149‑1 (MQ=255)                                  gggAACATCCACAGCGGGATCATTGCCGGGAAGTTGAACGGGGTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAg                                                                                                               <  8:160454/148‑1 (MQ=255)                                    gAACATCCACAGCGGGATCATTGCCGGGAAGTTGAACGGGGTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGt                                                                                                            >  1:193973/1‑149 (MQ=255)                                        aTCCACAGCGGGATCATTGCCGGGAAGTTGAACGGGGTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGTGTGCTc                                                                                                        >  5:218564/1‑149 (MQ=255)                                                 gggATCATTGCCGGGAAGTTGAACGGGGTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGACCACTTc                                                                                               <  8:235708/149‑1 (MQ=255)                                                   gATCATTGCCGGGAAGTTGAACGGGGTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGc                                                                                                              <  6:253662/132‑1 (MQ=255)                                                   gATCATTGCCGGGAAGTTGAACGGGGTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGc                                                                                                              >  5:253662/1‑132 (MQ=255)                                                     tCATTGCCGGGAAGTTGAACGGGGTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAg                                                                                                               >  2:115114/1‑129 (MQ=255)                                                     tCATTGCCGGGAAGTTGAACGGGGTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAg                                                                                                               <  1:115114/129‑1 (MQ=255)                                                        ttGCCGGGAAGTTGAACGGGGTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGACCACTTCCAGGCcg                                                                                        >  4:224093/1‑149 (MQ=255)                                                             gggAAGTTGAACGGGGTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGACCACTTCCAGGCCGCGGaa                                                                                   <  4:219256/149‑1 (MQ=255)                                                                   ttGAACGGGGTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGACCACTTCCAGGCCGCGGAAGATATc                                                                             >  2:69824/1‑149 (MQ=255)                                                                    tGAACGGGGTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCCCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGACCACTTCCAGGCcgcg                                                                                      <  7:244530/139‑1 (MQ=255)                                                                    tGAACGGGGTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCACGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGACCACTTCCAGGCcgcg                                                                                      >  8:244530/1‑139 (MQ=255)                                                                     gAACGGGGTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGACCACTTCCAGGCCGCGGAAGATATCg                                                                            <  3:224093/148‑1 (MQ=255)                                                                         ggggTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGACCACTTCCAGGCCGCGGAAGATATCGCCTTc                                                                       <  1:69824/149‑1 (MQ=255)                                                                           ggTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGACCACTTCCAGGCCGCGGAAGATATCGCCTTCAg                                                                     >  4:194402/1‑149 (MQ=255)                                                                             tGATGCCAGCGCATACCCCGATCGGCAGGAGCAAGCTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGACCACTTCCAGGCCGCGGAAGATATCGCCTTCAGCg                                                                   >  2:38203/1‑149 (MQ=255)                                                                                aatgggcgaattcgccgagaacgtcgctggcggtgtcgatacctacaccttgcgccagccgatcggcgAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGACCACTTCCAGGCCGCGGAAGATATCGCCTTCAGCGTCg                                                                >  3:106762‑M2/69‑149 (MQ=255)                                                                                   cAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGACCACTTCCAGGCCGCGGAAGATATCGCCTTCAGCGTCGGcc                                                             <  3:252646/149‑1 (MQ=255)                                                                                        cATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGACCACTTCCAGGCCGCGGAAGATATCGCCTTCAGCGTCGGCCAggg                                                         >  7:133701/1‑148 (MQ=255)                                                                                             gccgagaacgtcgctggcggtgtcgatacctacaccttgcgccagccgatcggcgAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGACCACTTCCAGGCCGCGGAAGATATCGCCTTCAGCGTCGGCCAGGGTCTTGc                                                   >  5:26395‑M2/56‑149 (MQ=255)                                                                                                     gCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGACCACTTCCAGGCCGCGGAAGATATCGCCTTCAGCGTCGGCCAGGGTCTTGCCCTGCTCg                                           <  2:193973/149‑1 (MQ=255)                                                                                                         gctggcggtgtcgatacctacaccttgcgccagccgatcggcgAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGACCACTTCCAGGCCGCGGAAGATATCGCCTTCAGCGTCGGCCAGGGTCTTGCCCTGCTCGgcgc                                       <  6:26395‑M2/106‑1 (MQ=255)                                                                                                                  gtAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGACCACTTCCAGGCCGCGGAAGATATCGCCTTCAGCGTCGGCCAGGGTCTTGCCCTGCTCGGCGCTGAGCACCt                              >  7:112080/1‑149 (MQ=255)                                                                                                                   tAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGACCACTTCCAGGCCGCGGAAGATATCGCCTTCAGCGTCGGCCAGGGTCTTGCCCTGCTCGGCGCTGAGCACCt                              <  8:133701/148‑1 (MQ=255)                                                                                                                   tAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGACCACTTCCAGGCCGCGGAAGATATCGCCTTCAGCGTCGGCCAGGGTCTTGCCCTGCTCGGCGCTGAGCACCTg                             >  8:107/1‑149 (MQ=255)                                                                                                                     ggTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGACCACTTCCAGGCCGCGGAAGATATCGCCTTCAGCGTCGGCCAGGGTCTTGCCCTGCTCGGCGCTGAGCACCTgg                            <  3:194402/148‑1 (MQ=255)                                                                                                                      gTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGACCACTTCCAGGCCGCGGAAGATATCGCCTTCAGCGTCGGCCAGGGTCTTGCCCTGCTCGGCGCTGAGCACCTggg                           >  2:184424/1‑148 (MQ=255)                                                                                                                        aTCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGACCACTTCCAGGCCGCGGAAGATATCGCCTTCAGCGTCGGCCAGGGTCTTGCCCTGCTCGGCGCTGAGCACCTgg                            >  7:101031/1‑145 (MQ=255)                                                                                                                        aTCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGACCACTTCCAGGCCGCGGAAGATATCGCCTTCAGCGTCGGCCAGGGTCTTGCCCTGCTCGGCGCTGAGCACCTgg                            <  8:101031/145‑1 (MQ=255)                                                                                                                           gACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGACCACTTCCAGGCCGCGGAAGATATCGCCTTCAGCGTCGGCCAGGGTCTTGCCCTGCTCGGCGCTGAGCACCTGGGCAATGc                     >  7:119072/1‑149 (MQ=255)                                                                                                                           gACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGACCACGTCCAGGCCGCGGAAGATATCGCCTTCAGCGTCGGCCAGGGTCTTGCCCTGCTCGGCGCTGAGCACCTGGGCAAtcc                     >  5:23305/1‑147 (MQ=255)                                                                                                                           gACACAGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGACCACTTACAGGCCGCGGAAGATATCGCCTTCAGCGTCGGCCAGGGTCTTGCCCTGCTCGGCGCTGAGCACCTGGGAAATGc                     >  5:19405/1‑149 (MQ=255)                                                                                                                                cGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGAcc                                                                                                    >  1:62593/1‑65 (MQ=255)                                                                                                                                cGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGAcc                                                                                                    <  2:62593/65‑1 (MQ=255)                                                                                                                                   cAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGACCACTTCCAGGCCGCGGAAGATATCGCCTTCAGCGTCGGCCAGGGTCtt                                                     <  5:89594/109‑1 (MQ=255)                                                                                                                                   cAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGACCACTTCCAGGCCGCGGAAGATATCGCCTTCAGCGTCGGCCAGGGTCtt                                                     >  6:89594/1‑109 (MQ=255)                                                                                                                                          gTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGACCACTTCCAGGCCGCGGAAGATATCGCCTTCAGCGTCGGCCAGGGTCTTGCCCTGCTCGGCGCTGAGCACCTGGGCAATGCGTTTGGTGTGTTcgc      <  8:112080/149‑1 (MQ=255)                                                                                                                                              tcggcgAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGACCACTTCCAGGCCGCGGAAGATATCGCCTTCAGCGTCGGCCAGGGTCTTGCCCTGCTCGGCGCTGAGCACCTgg                            >  1:207759‑M2/7‑123 (MQ=255)                                                                                                                                              tcggcgAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGACCACTTCCAGGCCGCGGAAGATATCGCCTTCAGCGTCGGCCAGGGTCTTGCCCTGCTCGGCGCTGAGCACCTgg                            <  2:207759‑M2/117‑1 (MQ=255)                                                                                                                                              tcggcgAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGACCACTTCCAGGCCGCGGAAGATATCGCCTTCAGCGTCGGCCAGGGTCTTGCCCTGCTCGGCGCTGAGCACCTGGGCAATGCGTTTGGTGTGTTCGCGGAt  >  8:153954‑M2/7‑149 (MQ=255)                                                                                                                                                   gAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGACCACTTCCAGGCCGCGGAAGATATCGCCTTCAGCGTCGGCCAGGGTCTTGCCCTGCTCg                                           <  6:236571‑M2/102‑1 (MQ=255)                                                                                                                                                   gAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGACCACTTCCAGGCCGCGGAAGATATCGCCTTCAGCGTCGGCCAGGGTCTTGCCCTGCTCg                                           >  5:236571‑M2/2‑103 (MQ=255)                                                                                                                                                    |                                                                                                                                               AGCACGAAGGTGTTGCCGCAGACGATGGCCATGGGGAACATCCACAGCGGGATCATTGCCGGGAAGTTGAACGGGGTGATGCCAGCGCATACGCCGATCGGCTGGCGCAAGGTGTAGGTATCGACACCGCCAGCGACGTTCTCGGCGAATTCGCCCATTTGCAGGGTGCCAATGGATGCAGCGTGCTCGACCACTTCCAGGCCGCGGAAGATATCGCCTTCAGCGTCGGCCAGGGTCTTGCCCTGCTCGGCGCTGAGCACCTGGGCAATGCGTTTGGTGTGTTCGCGGAT  >  NC_002947/5293839‑5294128

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.