New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5593775	34 (0.810)	3 (0.080)	3/242	NT	8.6%	coding (279/1284 nt)	PP_4921	NCS1 family transporter
	?	NC_002947	= 5593800	32 (0.810)					coding (254/1284 nt)	PP_4921	NCS1 family transporter

CCAGAGCATGGGGCTGTTCCAGGCACTTTCCTCACCGAACGCTCGCGCACCCAGCAAGCTGGCAGCATCGCGCATGACGATAATCTCGAAAGCGCCCCAACCCACCAGTTGCAGCAAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGCAACAGCACACCGACACCGGTGCCCAGGGCGATGGCCAGCACGGCGCCAGCAAGGCCTAGGCCTGGCGCCAG  >  NC_002947/5593628‑5593921                                                                                                                                                    |                                                                                                                                                   ccAGAGCATGGGGCTGTTCCAGGCACTTTCCTCACCGAACGCTCGCGCACCCAGCAAGCTGGCAGCATCGCGCATGACGATAATCTCGAAAGCGCCCCAACCCACCAGTTGCAGCAAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGc                                                                                                                                                   >  4:78106/1‑149 (MQ=255) ccAGAGCATGGGGCTGTTCCAGGCACTTTCCTCACCGAACGCTCGCGCACCCAGCAAGCTGGCAGCATCGCGCATGACGATAATCTCGAAAGCGCCCCAACCCACCAGTTGCAGCAAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGc                                                                                                                                                   >  4:81823/1‑149 (MQ=255)     atcATGGGGCTGTTCCAGGCACTTTCCTCACCGAACGCTCGCGCACCCAGCAAGCTGGCAGCATCGCGCATGACGAAAATCTCGAAAGCGCCCCAACCCACCAGTTGCAGCAAGTTGAGCATCGCCGGCAAGCGCGCGCCATGGCTGcc                                                                                                                                               <  3:149643/147‑1 (MQ=255)          ggggCTGTTCCAGGCACTTTCCTCACCGAACGCTCGCGCACCCAGCAAGCTGGCAGCATCGCGCATGACGATAATCTCGAAAGCGCCCCAACCCACCAGTTGCAGCAAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGc                                                                                                                                          >  7:127390/1‑149 (MQ=255)                 ttCCAGGCACTTTCCTCACCGAACGCTCGCGCACCCAGCAAGCTGGCAGCATCGCGGATGACGATAATCTCGAAAGCGCCCCAACCCACCAGTTGCTGCAAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGttt                                                                                                                                   >  6:225488/1‑149 (MQ=255)                   ccAGGCACTTTCCTCACCGAACGCTCGCGCACCCAGCAAGCTGGCAGCATCGCGCATGACGATAATCTCGAAAGCGCCCCAACCCACCAGTTGCAGCAAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTc                                                                                                                                  <  8:127390/148‑1 (MQ=255)                    cAGGCACTTTCCTCACCGAACGCTCGCGCACCCAGCAAGCTGGCAGCATCGCGCATGACGATAATCTCGAAAGCGCCCCAACCCACCAGTTGCAGCAAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCa                                                                                                                                 <  7:132743/148‑1 (MQ=255)                    cAGGCACTTTCCTCACCGAACGCTCGCGCACCCAGCAAGCTGGCAGCATCGCGCATGACGATAATCTCGAAAGCGCCCCAACCCACCAGTTGCAGCAAGTTGAGCAGCGACGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAg                                                                                                                                >  3:93990/1‑149 (MQ=255)                     aGGCACTTTCCTCACCGAACGCTCGCGCACCCAGCAAGCTGGCAGCATCGCGCATGACGATAATCTCGAAAGCGCCCCAACCCACCAGTTGCAGCAAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAgg                                                                                                                               <  1:246320/149‑1 (MQ=255)                     aGGCACTTTCCTCACCGAACGCTCGCGCACCCAGCAAGCTGGCAGCATCGCGCATGACGATAATCTCGAAAGCGCCCCAACCCACCAGTTGCAGCAAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAgg                                                                                                                               >  6:216918/1‑149 (MQ=255)                       gCACTTTCCTCACCGAACGCTCGCGCACCCAGCAAGCTGGCAGCATCGCGCATGACGATAATCTCGAAAGCGCCCCAACCCACCAGTTGCAGCAAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGt                                                                                                                             >  6:130327/1‑149 (MQ=255)                               cTCACCGAACGCTCGCGCACCCAGCAAGCTGGCAGCATCGCGCATGACGATAATCTCGAAAGCGCCCCAACCCACCAGTTGCAGCAAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCccatgg                                                                                                                     <  8:39976‑M2/149‑7 (MQ=255)                                tCACCGAACGCTCGCGCACCCAGCAAGCTGGCAGCATCGCGCATGACGATAATCTCGAAAGCGCCCCAACCCACCAGTTGCAGCAAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCccatggc                                                                                                                    <  3:168336‑M2/149‑8 (MQ=255)                                tCACCGAACGCTCGCGCACCCAGCAAGCTGGCAGCATCGCGCATGACGATAATCTCGAAAGCGCCCCAACCCACCAGTTGCAGCAAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCccatggc                                                                                                                    <  3:171819‑M2/149‑8 (MQ=255)                                  aCCGAACGCTCGCGCACCCAGCAAGCTGGCAGCATCGCGCATGACGATAATCTCGAAAGCGCCCCAACCCACCAGTTGCAGCAAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCccatggcg                                                                                                                   <  2:125818‑M2/148‑9 (MQ=255)                                   ccGAACGCTCGCGCACCCAGCAAGCTGGCAGCATCGCGCATGACGATAATCTCGAAAGCGCCCCAACCCACCAGTTGCAGCAAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGa                                                                                                                 <  5:216918/149‑1 (MQ=255)                                     gAACGCTCGCGCACCCAGCAAGCTGGCAGCATCGCGCATGACGATAATCTCGAAAGCGCCCCAACCCACCAGTTGCAGCAAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGgcaccctgaaactcagcctgggcagccatggcgcgcg                                                                                                               <  7:38184‑M1/149‑38 (MQ=255)                                         gCTCGCGCACCCAGCAAGCTGGCAGCATCGCGCATGACGATAATCTCGAAAGCGCCCCAACCCACCAGTTGCAGCAAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGgcaccctgaaactcagcctgggcagcc                                                                                                                         >  7:184180‑M1/1‑108 (MQ=255)                                         gCTCGCGCACCCAGCAAGCTGGCAGCATCGCGCATGACGATAATCTCGAAAGCGCCCCAACCCACCAGTTGCAGCAAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGgcaccctgaaactcagcctgggcagcc                                                                                                                         <  8:184180‑M1/135‑28 (MQ=255)                                          cTCGCGCACCCAGCAAGCTGGCAGCATCGCGCATGACGATAATCTCGAAAGCGCCCCAACCCCCCAGTTGCAGCAAGTTGAGCAGCGCCGGCACGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCCGGGTGCCCATGGCGGACAGGCCg                                                                                                          >  3:116097/1‑149 (MQ=255)                                           tCGCGCACCCAGCAAGCTGGCAGCATCGCGCATGACGATAATCTCGAAAGCGCCCCAACCCACCAGTTGCAGCAAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCc                                                                                                                          <  7:28533‑M2/132‑2 (MQ=255)                                           tCGCGCACCCAGCAAGCTGGCAGCATCGCGCATGACGATAATCTCGAAAGCGCCCCAACCCACCAGTTGCAGCAAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCc                                                                                                                          >  8:28533‑M2/1‑131 (MQ=255)                                                       cAAGCTGGCAGCATCGCGCATGACGATAATCTCGAAAGCGCCCCAACCCACCAGTTGCAGCAAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGa                                                                                             >  8:162719/1‑149 (MQ=255)                                                          gCTGGCAGCATCGCGCATGACGATAATCTCGAAAGCGCCCCAACCCACCAGTTGCAGCAAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATaa                                                                                          <  5:153093/149‑1 (MQ=255)                                                                    tCGCGCATGACGATAATCTCGAAAGCGCCCCAACCCACCAGTTGCAGCAAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCccgccg                                                                                 >  2:225049/1‑148 (MQ=255)                                                                    tCGCGCATGACGATAATCTCGAAAGCGCCCCAACCCACCAGTTGCAGCAAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCAccgccg                                                                                 >  7:218232/1‑148 (MQ=255)                                                                              cGATAATCTCGAAAGCGCCCCAACCCACCAGTTGCAGCAAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGCAAc                                                                      <  1:125818/149‑1 (MQ=255)                                                                               gATAATCTCGAAAGCGCCCCAACCCAGCAGTTGCAGCAAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGCAACa                                                                     <  3:97881/149‑1 (MQ=255)                                                                               gATAATCTCGAAAGCGCCCCAACCCACCAGTTGCAGCAAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCCGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGCaa                                                                       >  5:62986/1‑147 (MQ=255)                                                                                        gAAAGCGCCCCAACCCACCAGTTGCAGCAAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGCAACAGCacaccg                                                             <  3:81823/148‑1 (MQ=255)                                                                                        gAAAGCGCCCCAACCCACCAGTTGCAGCAAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGCAACAGCacaccg                                                             <  3:78106/148‑1 (MQ=255)                                                                                           aGCGCCCCAACCCACCAGTTGCAGCAAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCTCCCAGCAACAGCacaccgacac                                                         <  7:39976/149‑1 (MQ=255)                                                                                            gcgcCCCAACCCCCCAGTTGCAGCAAGTTGACCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGAAACAGCacaccgacacc                                                        <  2:158714/149‑1 (MQ=255)                                                                                                           aGTTGCAGCAAGTCGAGCAGCGCCGGCACGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGCAACAGCACACCGACACCGGTGCCCAGGGCGAt                                         <  4:227528/149‑1 (MQ=255)                                                                                                                 agcaAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGCAACAGCACACCGACACCGGTGCCCAGGGCGATGGcc                                     <  2:231546/147‑1 (MQ=255)                                                                                                                 agcaAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGCAACAGCACACCGACACCGGTGCCCAGGGCGATGGCCAg                                   <  7:162719/149‑1 (MQ=255)                                                                                                                 agcaAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGCAACAGCACACCGACACCGGTGCCCAGGGCGAGGGcc                                     >  1:231546/1‑147 (MQ=255)                                                                                                                  gcaAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGCAACAGCACACCGACACCGGTGCCCAGGGCGATGGCCAg                                   >  3:253847/1‑148 (MQ=255)                                                                                                                     aGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGCAACAGCACACCGACACCGGTGCCCAGGGCGATGGCCAGCACg                               <  3:108678/149‑1 (MQ=255)                                                                                                                             agcGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGCAACAGCACACCGACACCGGTGCCCAGGGCGATGGCCAGCACGGCGCCAg                        >  1:45939/1‑148 (MQ=255)                                                                                                                                        gcgcgcgcCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGCAACa                                                                     <  4:73082/92‑1 (MQ=255)                                                                                                                                        gcgcgcgcCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGCAACa                                                                     >  3:73082/1‑92 (MQ=255)                                                                                                                                         cgcgcgcCATGGCTGCCCAGGCTGAGTTTCAGGGTGCccatggcgcgcgcttgccggcgctgctcaacttgctgcaactggtgggttggggcgctttcgagattatcgtcatgcgcgatgctgccagcttgctgggtgcgcgagcgttc           <  7:38184‑M2/149‑113 (MQ=255)                                                                                                                                          gcgcgcCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGCAACAGCACACCGACACCGGTGCCCAGGGCGATGGCCAGCACGGCGCCAGCAaggcctaggcct          >  7:9723/1‑149 (MQ=255)                                                                                                                                            gcgcCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGCAACAGCacaccgacaccg                                                       <  2:29492/102‑1 (MQ=255)                                                                                                                                            gcgcCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGCAACAGCacaccgacaccg                                                       >  1:29492/1‑102 (MQ=255)                                                                                                                                             cgcCATGGgcaccctgaaactcagcctgggcagccatggcgcgcgcttgccggcgctgctcaacttgctgcaactggtgggttggggcgctttcgagattatcgtcatgcgcgatgctgccagcttgctgggtgcgcgagcgttcggt        <  2:125818‑M1/148‑141 (MQ=255)                                                                                                                                             cgcCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGCAACAGCACACCGACACCGGTGCCCAGGGCGATGGCCAGCACGGCGCCAGCAAGGCCTAGGCCTGgc       >  6:238752/1‑149 (MQ=255)                                                                                                                                              gcCATGGgcaccctgaaactcagcctgggcagccatggcgcgcgcttgccggcgctgctcaacttgctgcaactggtgggttggggcgctttcgagattatcgtcatgcgcgatgctgccagcttgctgggtgcgcgagcgttcggtga      <  3:168336‑M1/149‑143 (MQ=255)                                                                                                                                              gcCATGGgcaccctgaaactcagcctgggcagccatggcgcgcgcttgccggcgctgctcaacttgctgcaactggtgggttggggcgctttcgagattatcgtcatgcgcgatgctgccagcttgctgggtgcgcgagcgttcggtga      <  3:171819‑M1/149‑143 (MQ=255)                                                                                                                                               ccATGGgcaccctgaaactcagcctgggcagccatggcgcgcgcttgccggcgctgctcaacttgctgcaactggtgggttggggcgctttcgagattatcgtcatgcgcgatgctgccagcttgctgggtgcgcgagcgttcggtgag     <  8:39976‑M1/149‑144 (MQ=255)                                                                                                                                                  tGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGCAACAGCACACCGACACCGGTGCCCAGGGCGATGGCCAGCACGGCGCCAGCAAGGCCTAGGCCTGGCGCCAg  <  5:225488/149‑1 (MQ=255)                                                                                                                                                   ggCTGCCCAGGCTGAGTTTCAGGGTGCccatggcgcgcgcttgccggcgctgctcaacttgctgcaactggtgggttggggcgctttcgagattatcgtcatgcgcgatgctgccagcttgctgggtgcgcgagc               >  7:184180‑M2/1‑27 (MQ=255)                                                                                                                                                   ggCTGCCCAGGCTGAGTTTCAGGGTGCccatggcgcgcgcttgccggcgctgctcaacttgctgcaactggtgggttggggcgctttcgagattatcgtcatgcgcgatgctgccagcttgctgggtgcgcgagc               <  8:184180‑M2/135‑109 (MQ=255)                                                                                                                                                    ggcaccctgaaactcagcctgggcagccatggcgcgcgcttgccggcgctgctcaacttgctgcaactggtgggttggggcgctttcgagattatcgtcatgcgcgatgctgccagcttgctgggtgcgcga                 <  7:28533‑M1/132‑132 (MQ=255)                                                                                                                                                    ggcaccctgaaactcagcctgggcagccatggcgcgcgcttgccggcgctgctcaacttgctgcaactggtgggttggggcgctttcgagattatcgtcatgcgcgatgctgccagcttgctgggtgcgcga                 >  8:28533‑M1/1‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                   CCAGAGCATGGGGCTGTTCCAGGCACTTTCCTCACCGAACGCTCGCGCACCCAGCAAGCTGGCAGCATCGCGCATGACGATAATCTCGAAAGCGCCCCAACCCACCAGTTGCAGCAAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGCAACAGCACACCGACACCGGTGCCCAGGGCGATGGCCAGCACGGCGCCAGCAAGGCCTAGGCCTGGCGCCAG  >  NC_002947/5593628‑5593921

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.