New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5593775	34 (0.810)	3 (0.080)	3/242	NT	8.6%	coding (279/1284 nt)	PP_4921	NCS1 family transporter
	?	NC_002947	= 5593800	32 (0.810)					coding (254/1284 nt)	PP_4921	NCS1 family transporter

CTCACCGAACGCTCGCGCACCCAGCAAGCTGGCAGCATCGCGCATGACGATAATCTCGAAAGCGCCCCAACCCACCAGTTGCAGCAAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGCAACAGCACACCGACACCGGTGCCCAGGGCGATGGCCAGCACGGCGCCAGCAAGGCCTAGGCCTGGCGCCAGCATGGCGCCGACCTGCAGCACCA  >  NC_002947/5593658‑5593944                                                                                                                                               |                                                                                                                                                 cTCACCGAACGCTCGCGCACCCAGCAAGCTGGCAGCATCGCGCATGACGATAATCTCGAAAGCGCCCCAACCCACCAGTTGCAGCAAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCccatgg                                                                                                                                            <  8:39976‑M2/149‑7 (MQ=255)  tCACCGAACGCTCGCGCACCCAGCAAGCTGGCAGCATCGCGCATGACGATAATCTCGAAAGCGCCCCAACCCACCAGTTGCAGCAAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCccatggc                                                                                                                                           <  3:171819‑M2/149‑8 (MQ=255)  tCACCGAACGCTCGCGCACCCAGCAAGCTGGCAGCATCGCGCATGACGATAATCTCGAAAGCGCCCCAACCCACCAGTTGCAGCAAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCccatggc                                                                                                                                           <  3:168336‑M2/149‑8 (MQ=255)    aCCGAACGCTCGCGCACCCAGCAAGCTGGCAGCATCGCGCATGACGATAATCTCGAAAGCGCCCCAACCCACCAGTTGCAGCAAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCccatggcg                                                                                                                                          <  2:125818‑M2/148‑9 (MQ=255)     ccGAACGCTCGCGCACCCAGCAAGCTGGCAGCATCGCGCATGACGATAATCTCGAAAGCGCCCCAACCCACCAGTTGCAGCAAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGa                                                                                                                                        <  5:216918/149‑1 (MQ=255)            cTCGCGCACCCAGCAAGCTGGCAGCATCGCGCATGACGATAATCTCGAAAGCGCCCCAACCCCCCAGTTGCAGCAAGTTGAGCAGCGCCGGCACGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCCGGGTGCCCATGGCGGACAGGCCg                                                                                                                                 >  3:116097/1‑149 (MQ=255)             tCGCGCACCCAGCAAGCTGGCAGCATCGCGCATGACGATAATCTCGAAAGCGCCCCAACCCACCAGTTGCAGCAAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCc                                                                                                                                                 <  7:28533‑M2/132‑2 (MQ=255)             tCGCGCACCCAGCAAGCTGGCAGCATCGCGCATGACGATAATCTCGAAAGCGCCCCAACCCACCAGTTGCAGCAAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCc                                                                                                                                                 >  8:28533‑M2/1‑131 (MQ=255)                         cAAGCTGGCAGCATCGCGCATGACGATAATCTCGAAAGCGCCCCAACCCACCAGTTGCAGCAAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGa                                                                                                                    >  8:162719/1‑149 (MQ=255)                            gCTGGCAGCATCGCGCATGACGATAATCTCGAAAGCGCCCCAACCCACCAGTTGCAGCAAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATaa                                                                                                                 <  5:153093/149‑1 (MQ=255)                                      tCGCGCATGACGATAATCTCGAAAGCGCCCCAACCCACCAGTTGCAGCAAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCccgccg                                                                                                        >  2:225049/1‑148 (MQ=255)                                      tCGCGCATGACGATAATCTCGAAAGCGCCCCAACCCACCAGTTGCAGCAAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCAccgccg                                                                                                        >  7:218232/1‑148 (MQ=255)                                                cGATAATCTCGAAAGCGCCCCAACCCACCAGTTGCAGCAAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGCAAc                                                                                             <  1:125818/149‑1 (MQ=255)                                                 gATAATCTCGAAAGCGCCCCAACCCAGCAGTTGCAGCAAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGCAACa                                                                                            <  3:97881/149‑1 (MQ=255)                                                 gATAATCTCGAAAGCGCCCCAACCCACCAGTTGCAGCAAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCCGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGCaa                                                                                              >  5:62986/1‑147 (MQ=255)                                                          gAAAGCGCCCCAACCCACCAGTTGCAGCAAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGCAACAGCacaccg                                                                                    <  3:78106/148‑1 (MQ=255)                                                          gAAAGCGCCCCAACCCACCAGTTGCAGCAAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGCAACAGCacaccg                                                                                    <  3:81823/148‑1 (MQ=255)                                                             aGCGCCCCAACCCACCAGTTGCAGCAAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCTCCCAGCAACAGCacaccgacac                                                                                <  7:39976/149‑1 (MQ=255)                                                              gcgcCCCAACCCCCCAGTTGCAGCAAGTTGACCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGAAACAGCacaccgacacc                                                                               <  2:158714/149‑1 (MQ=255)                                                                             aGTTGCAGCAAGTCGAGCAGCGCCGGCACGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGCAACAGCACACCGACACCGGTGCCCAGGGCGAt                                                                <  4:227528/149‑1 (MQ=255)                                                                                   agcaAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGCAACAGCACACCGACACCGGTGCCCAGGGCGATGGcc                                                            <  2:231546/147‑1 (MQ=255)                                                                                   agcaAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGCAACAGCACACCGACACCGGTGCCCAGGGCGATGGCCAg                                                          <  7:162719/149‑1 (MQ=255)                                                                                   agcaAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGCAACAGCACACCGACACCGGTGCCCAGGGCGAGGGcc                                                            >  1:231546/1‑147 (MQ=255)                                                                                    gcaAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGCAACAGCACACCGACACCGGTGCCCAGGGCGATGGCCAg                                                          >  3:253847/1‑148 (MQ=255)                                                                                       aGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGCAACAGCACACCGACACCGGTGCCCAGGGCGATGGCCAGCACg                                                      <  3:108678/149‑1 (MQ=255)                                                                                               agcGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGCAACAGCACACCGACACCGGTGCCCAGGGCGATGGCCAGCACGGCGCCAg                                               >  1:45939/1‑148 (MQ=255)                                                                                                          gcgcgcgcCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGCAACa                                                                                            <  4:73082/92‑1 (MQ=255)                                                                                                          gcgcgcgcCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGCAACa                                                                                            >  3:73082/1‑92 (MQ=255)                                                                                                           cgcgcgcCATGGCTGCCCAGGCTGAGTTTCAGGGTGCccatggcgcgcgcttgccggcgctgctcaacttgctgcaactggtgggttggggcgctttcgagattatcgtcatgcgcgatgctgccagcttgctgggtgcgcgagcgttc                                  <  7:38184‑M2/149‑113 (MQ=255)                                                                                                            gcgcgcCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGCAACAGCACACCGACACCGGTGCCCAGGGCGATGGCCAGCACGGCGCCAGCAaggcctaggcct                                 >  7:9723/1‑149 (MQ=255)                                                                                                              gcgcCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGCAACAGCacaccgacaccg                                                                              <  2:29492/102‑1 (MQ=255)                                                                                                              gcgcCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGCAACAGCacaccgacaccg                                                                              >  1:29492/1‑102 (MQ=255)                                                                                                               cgcCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGCAACAGCACACCGACACCGGTGCCCAGGGCGATGGCCAGCACGGCGCCAGCAAGGCCTAGGCCTGgc                              >  6:238752/1‑149 (MQ=255)                                                                                                                    tGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGCAACAGCACACCGACACCGGTGCCCAGGGCGATGGCCAGCACGGCGCCAGCAAGGCCTAGGCCTGGCGCCAg                         <  5:225488/149‑1 (MQ=255)                                                                                                                     ggCTGCCCAGGCTGAGTTTCAGGGTGCccatggcgcgcgcttgccggcgctgctcaacttgctgcaactggtgggttggggcgctttcgagattatcgtcatgcgcgatgctgccagcttgctgggtgcgcgagc                                      <  8:184180‑M2/135‑109 (MQ=255)                                                                                                                     ggCTGCCCAGGCTGAGTTTCAGGGTGCccatggcgcgcgcttgccggcgctgctcaacttgctgcaactggtgggttggggcgctttcgagattatcgtcatgcgcgatgctgccagcttgctgggtgcgcgagc                                      >  7:184180‑M2/1‑27 (MQ=255)                                                                                                                       cTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCAGCCAGCAACAGCACACAGACACCGGTGCCCAGGGCGATGGCCAGCACGGCGCCAGCAAGGCCTAGGCCTGGCGCCAGCAt                      <  8:218232/149‑1 (MQ=255)                                                                                                                          cccAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGCAACAGCACACCGACACCGGTGCCCAGGGCGATGGCCAGCACGGCGCCAGCAAGGCCTAGGCCTGGCGCCAGCATg                     <  1:225049/147‑1 (MQ=255)                                                                                                                          cccAGGCGGAGGTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGCAACAGCACACCGACACCGGTGCCCAGGGCGATGGCCAGCACGGCGCCAGCAAGGCCTAGGCCTGGCGCCAGCATGgc                   <  4:116097/149‑1 (MQ=255)                                                                                                                                    gTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGCAACAGCACACCGACACCGGTGCCCAGGGCGATGGCCAGCACGGCGCCAGCAAGGCCTAGGCCTGGCGCCAGCATGGCGCCGACCTgc         <  2:45939/149‑1 (MQ=255)                                                                                                                                     tttCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGCAACAGCACACCGACACCGGTGCCCAGGGCGATGGCCAGCACGGCGCCAGCAAGGCCTAGGCCTGGCGCCAGCATGGCGCCGACCTgca        <  7:212953/149‑1 (MQ=255)                                                                                                                                       tCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGCAACAGCACACCGACACCGGTGCCCAGGGCGATGGCCAGCACGGCGCCAGCAAGGCCTAGGCCTGGCGCCAGCATGGCGCTGACCTgcag       <  8:9723/148‑1 (MQ=255)                                                                                                                                           ggTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGCAACAGCACACCGACACCGGTGCCCAGGGCGATGGCCAGCACGGCGCCAGCAAGGCCTAGGCCTGGCGCCAGCATGGCGCCGACCTGCAGCACCa  <  5:238752/149‑1 (MQ=255)                                                                                                                                               cccATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGCAACAGCACACCGACACCGGTGCCCAGGGCGATGGCCa                                                           <  2:203016/88‑1 (MQ=255)                                                                                                                                               cccATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGCAACAGCACACCGACACCGGTGCCCAGGGCGATGGCCa                                                           >  1:203016/1‑88 (MQ=255)                                                                                                                                               |                                                                                                                                                 CTCACCGAACGCTCGCGCACCCAGCAAGCTGGCAGCATCGCGCATGACGATAATCTCGAAAGCGCCCCAACCCACCAGTTGCAGCAAGTTGAGCAGCGCCGGCAAGCGCGCGCCATGGCTGCCCAGGCTGAGTTTCAGGGTGCCCATGGCGGACAGGCCGGTGTCGCTGCCGATAACCCCCGCCGCACCCAGCAACAGCACACCGACACCGGTGCCCAGGGCGATGGCCAGCACGGCGCCAGCAAGGCCTAGGCCTGGCGCCAGCATGGCGCCGACCTGCAGCACCA  >  NC_002947/5593658‑5593944

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.