New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5817709 =	57 (1.350)	4 (0.100)	3/238	NT	7.1%	coding (245/1011 nt)	pilT	twitching motility protein
	?	NC_002947	5817767 =	52 (1.340)					coding (187/1011 nt)	pilT	twitching motility protein

AGCCATCCCGGCAATGCGCAACAGCTTGAAACACATCCGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATC  >  NC_002947/5817569‑5817851                                                                                                                                               |                                                                                                                                                  aGCCATCCCGGCAATGCGCAACAGCTTGAAACACATCCGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCgg                                                                                                                                         >  4:236756/1‑148 (MQ=255)  gCCATCCCGGCAATGCGCAACAGCTTGAAACACATCCGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGc                                                                                                                                        >  5:141629/1‑148 (MQ=255)   ccATCCCGGCAATGCGCAACAGCTTGAAACACATCCGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCaa                                                                                                                                      >  3:160906/1‑149 (MQ=255)        ccGGCAATGCGCAACAGCATGAAACACATCCGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTGAGCCGAA‑‑AGATCCCAAGCG‑‑‑CCGGCAAcac                                                                                                                                   >  8:215686/1‑145 (MQ=255)          ggCAATGCGCAACAGCTTGAAACACATCCGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAgc                                                                                                                               <  2:19435/149‑1 (MQ=255)          ggCAATGCGCAACAGCTTGAAACACATCCGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAgc                                                                                                                               <  1:58785/149‑1 (MQ=255)                    aaCAGCTTGAAACACATCCGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCCACGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTcc                                                                                                                      >  5:80455/1‑148 (MQ=255)                            gAAACACATCCGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCTAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAAATCCAGCTCAAGGTCCATTTCAt                                                                                                               <  8:98986/147‑1 (MQ=255)                              aaCACATCCGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGcc                                                                                                           >  3:122302/1‑149 (MQ=255)                                  caTCCGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTgg                                                                                                       >  4:215753/1‑149 (MQ=255)                                  caTCCGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTgg                                                                                                       <  3:236756/149‑1 (MQ=255)                                   aTCCGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAg                                                                                                                          <  8:184214/129‑1 (MQ=255)                                   aTCCGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAg                                                                                                                          >  7:184214/1‑129 (MQ=255)                                   aTCCGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTggg                                                                                                      >  1:40200/1‑149 (MQ=255)                                     ccGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACt                                                                                                                                    >  5:194151/1‑117 (MQ=255)                                     ccGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACt                                                                                                                                    <  6:194151/117‑1 (MQ=255)                                              ccAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCgg                                                                                           >  5:44927/1‑149 (MQ=255)                                                aGCTCACTCACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGgc                                                                                          >  3:137215/1‑148 (MQ=255)                                                 gCTCACTCACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGgccc                                                                                        >  7:98199/1‑147 (MQ=255)                                                    cgcctggatggcgagttgcagcgtatgggcttgccgccgttgagccagggtgccttgatcgagggcatggccagcgtgctggataacgatcAGCG‑‑‑CCgg                                                                                                                                         >  8:157741‑M1/92‑99 (MQ=255)                                                    cgcctggatggcgagttgcagcgtatgggcttgccgccgttgagccagggtgccttgatcgagggcatggccagcgtgctggataacgatcAGCG‑‑‑CCgg                                                                                                                                         <  7:157741‑M1/8‑1 (MQ=255)                                                    cgcctggatggcgagttgcagcgtatgggcttgccgccgttgagccagggtgccttgatcgagggcatggccagcgtgctggataacgatcAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGgcg                                                                                         >  1:238937‑M1/92‑147 (MQ=255)                                                    cgccgggatggcgagttgcagcgtatgggcttgccgccgttgagccagggtgccttgatcgagggcatggccagcgtgctggataacgatcAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGgcgc                                                                                        >  5:11237‑M1/92‑148 (MQ=255)                                                     actcacCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGAt                                                                                    >  8:229194/1‑149 (MQ=255)                                                       tcacCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATc                                                                                   >  1:96387/1‑148 (MQ=255)                                                         acCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGt                                                                                 >  6:133277/1‑148 (MQ=255)                                                         acCGTCGCAATGCGCCCCGGGAACAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCgg                                                                                                                                         >  2:39512/1‑92 (MQ=255)                                                         acCGTCGCAATGCGCCCCGGGAACAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCgg                                                                                                                                         <  1:39512/92‑1 (MQ=255)                                                           cGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAATGAGGCCCCAAACGTGTACGGCAAAACCAGCGCAAGGACCATTTCATCGCATTGGCCCCCATCCCGCCGCTCATc                                                                                   >  1:218860/1‑149 (MQ=255)                                                            gTCGCAATGCTCCCCGGTATCAGCCGAAACGTAACCTCCGGGCCATTCAACTTGCGAAACAGGTTCAGCCGAA‑‑ATCGCACAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCACACTGCCGGCGCTGATCGTTATc                                                                             <  1:78019/149‑1 (MQ=255)                                                            gTCGCAATGCGCCCCGGGAGCAGCCGAACGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATc                                                                             <  5:228283/149‑1 (MQ=255)                                                                cAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCACGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGc                                                                         <  6:224081/149‑1 (MQ=255)                                                                 aaTGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCa                                                                        >  4:256785/1‑149 (MQ=255)                                                                      gcCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTg                                                                   >  6:148147/1‑149 (MQ=255)                                                                         ccGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGc                                                                 >  1:260218/1‑148 (MQ=255)                                                                         ccGGGATCAGCCGAAAGGTAACCGCCGAGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGCTCGTTATCCAGCACGCTGGc                                                                 >  1:145540/1‑148 (MQ=255)                                                                            ggATCAGGCGAAAGGTAACCGCCGGGCCTTTCAACTGGCGAATCAGGTTCAGCCGAA‑‑AGCGCCCTAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATg                                                             <  4:122302/149‑1 (MQ=255)                                                                             gATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGc                                                            <  4:137215/149‑1 (MQ=255)                                                                                 aGCCGAAAGGTAACCGCCGTGCCTTTCTACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CGGGCAACTCCAGCGCAAGGTCGATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTc                                                        <  6:80455/149‑1 (MQ=255)                                                                                  gCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTc                                                        >  8:195817/1‑148 (MQ=255)                                                                                   ccGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGa                                                      >  1:154542/1‑149 (MQ=255)                                                                                      cgccgttgagccagggtgccttgatcgagggcatggccagcgtgctggataacgatcAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGgcg                                                                                         <  8:154738‑M1/56‑1 (MQ=255)                                                                                      cgccgttgagccagggtgccttgatcgagggcatggccagcgtgctggataacgatcAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGgcg                                                                                         >  7:154738‑M1/58‑113 (MQ=255)                                                                                        aGGTAACCGCCGGGACATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAg                                                 <  4:160906/149‑1 (MQ=255)                                                                                          gTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCa                                                   <  7:234489/145‑1 (MQ=255)                                                                                          gTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCa                                                   >  8:234489/1‑145 (MQ=255)                                                                                           tAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCa                                              <  7:229194/149‑1 (MQ=255)                                                                                                     gCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTc                                     >  3:188198/1‑148 (MQ=255)                                                                                                      ccATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCaa                                   >  8:27705/1‑149 (MQ=255)                                                                                                           cAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAAcggc                               <  7:195817/148‑1 (MQ=255)                                                                                                            aaCTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAAcggcg                              <  6:44927/148‑1 (MQ=255)                                                                                                                 gCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGc                        <  6:141629/149‑1 (MQ=255)                                                                                                                 gCGAAACAGGGTCAGCCGAA‑‑AGCGCACAATCT‑‑‑CCGGCAACTCCAGCGCAAGGTACATTTCATCGCCTTGGTCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCaa                          <  8:98199/147‑1 (MQ=255)                                                                                                                   gAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCt                                          <  4:2953/129‑1 (MQ=255)                                                                                                                   gAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCt                                          >  3:2953/1‑129 (MQ=255)                                                                                                                   gAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGccc                      <  4:188198/149‑1 (MQ=255)                                                                                                                     aaCAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCAt                    <  3:256785/149‑1 (MQ=255)                                                                                                                       cAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATAc                  >  2:113974/1‑149 (MQ=255)                                                                                                                           ttCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAAcggc                               <  6:20873/132‑1 (MQ=255)                                                                                                                           ttCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAAcggc                               >  5:20873/1‑132 (MQ=255)                                                                                                                                ccGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCa                     >  5:255435/1‑137 (MQ=255)                                                                                                                                ccGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCa                     <  6:255435/137‑1 (MQ=255)                                                                                                                                 cGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTc        >  7:13065/1‑149 (MQ=255)                                                                                                                                          gcCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATc  >  7:50614/1‑148 (MQ=255)                                                                                                                                               |                                                                                                                                                  AGCCATCCCGGCAATGCGCAACAGCTTGAAACACATCCGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATC  >  NC_002947/5817569‑5817851

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.