New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5817709 =	57 (1.350)	4 (0.100)	3/238	NT	7.1%	coding (245/1011 nt)	pilT	twitching motility protein
	?	NC_002947	5817767 =	52 (1.340)					coding (187/1011 nt)	pilT	twitching motility protein

ACTCACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATCGGAATCTGGCCCGTCGCCAGGTGCAGGTCTGA  >  NC_002947/5817621‑5817896                                                                                                                                                        |                                                                                                                                  actcacCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGAt                                                                                                                                 >  8:229194/1‑149 (MQ=255)   tcacCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATc                                                                                                                                >  1:96387/1‑148 (MQ=255)     acCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGt                                                                                                                              >  6:133277/1‑148 (MQ=255)       cGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAATGAGGCCCCAAACGTGTACGGCAAAACCAGCGCAAGGACCATTTCATCGCATTGGCCCCCATCCCGCCGCTCATc                                                                                                                                >  1:218860/1‑149 (MQ=255)        gTCGCAATGCTCCCCGGTATCAGCCGAAACGTAACCTCCGGGCCATTCAACTTGCGAAACAGGTTCAGCCGAA‑‑ATCGCACAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCACACTGCCGGCGCTGATCGTTATc                                                                                                                          <  1:78019/149‑1 (MQ=255)        gTCGCAATGCGCCCCGGGAGCAGCCGAACGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATc                                                                                                                          <  5:228283/149‑1 (MQ=255)            cAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCACGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGc                                                                                                                      <  6:224081/149‑1 (MQ=255)             aaTGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCa                                                                                                                     >  4:256785/1‑149 (MQ=255)                  gcCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTg                                                                                                                >  6:148147/1‑149 (MQ=255)                     ccGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGc                                                                                                              >  1:260218/1‑148 (MQ=255)                     ccGGGATCAGCCGAAAGGTAACCGCCGAGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGCTCGTTATCCAGCACGCTGGc                                                                                                              >  1:145540/1‑148 (MQ=255)                        ggATCAGGCGAAAGGTAACCGCCGGGCCTTTCAACTGGCGAATCAGGTTCAGCCGAA‑‑AGCGCCCTAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATg                                                                                                          <  4:122302/149‑1 (MQ=255)                         gATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGc                                                                                                         <  4:137215/149‑1 (MQ=255)                             aGCCGAAAGGTAACCGCCGTGCCTTTCTACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CGGGCAACTCCAGCGCAAGGTCGATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTc                                                                                                     <  6:80455/149‑1 (MQ=255)                              gCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTc                                                                                                     >  8:195817/1‑148 (MQ=255)                               ccGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGa                                                                                                   >  1:154542/1‑149 (MQ=255)                                    aGGTAACCGCCGGGACATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAg                                                                                              <  4:160906/149‑1 (MQ=255)                                      gTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCa                                                                                                <  7:234489/145‑1 (MQ=255)                                      gTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCa                                                                                                >  8:234489/1‑145 (MQ=255)                                       tAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCa                                                                                           <  7:229194/149‑1 (MQ=255)                                                 gCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTc                                                                                  >  3:188198/1‑148 (MQ=255)                                                  ccATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCaa                                                                                >  8:27705/1‑149 (MQ=255)                                                       cAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAAcggc                                                                            <  7:195817/148‑1 (MQ=255)                                                        aaCTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAAcggcg                                                                           <  6:44927/148‑1 (MQ=255)                                                             gCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGc                                                                     <  6:141629/149‑1 (MQ=255)                                                             gCGAAACAGGGTCAGCCGAA‑‑AGCGCACAATCT‑‑‑CCGGCAACTCCAGCGCAAGGTACATTTCATCGCCTTGGTCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCaa                                                                       <  8:98199/147‑1 (MQ=255)                                                               gAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCt                                                                                       >  3:2953/1‑129 (MQ=255)                                                               gAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCt                                                                                       <  4:2953/129‑1 (MQ=255)                                                               gAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGccc                                                                   <  4:188198/149‑1 (MQ=255)                                                                 aaCAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCAt                                                                 <  3:256785/149‑1 (MQ=255)                                                                   cAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATAc                                                               >  2:113974/1‑149 (MQ=255)                                                                       ttCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAAcggc                                                                            >  5:20873/1‑132 (MQ=255)                                                                       ttCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAAcggc                                                                            <  6:20873/132‑1 (MQ=255)                                                                            ccGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCa                                                                  >  5:255435/1‑137 (MQ=255)                                                                            ccGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCa                                                                  <  6:255435/137‑1 (MQ=255)                                                                             cGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTc                                                     >  7:13065/1‑149 (MQ=255)                                                                                      gcCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATc                                               >  7:50614/1‑148 (MQ=255)                                                                                             CG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCgca                                       >  5:133277‑M1/1‑149 (MQ=255)                                                                                               gcgccggcagtgggcccaaggcgatgaaatggaccttgcgctggagttgccggcgctGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCCGgcg                                         >  5:11237‑M2/58‑148 (MQ=255)                                                                                                cgccggcagtgggcccaaggcgatgaaatggaccttgcgctggagttgccggcgctGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAAcggcg                                                                           <  8:154738‑M2/57‑1 (MQ=255)                                                                                                cgccggcagtgggcccaaggcgatgaaatggaccttgcgctggagttgccggcgctGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAAcggcg                                                                           >  7:154738‑M2/57‑113 (MQ=255)                                                                                                cgccggcagtgggcccaaggcgatgaaatggaccttgcgctggagttgccggcgctGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGgcg                                         >  1:238937‑M2/57‑147 (MQ=255)                                                                                                         cTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATCGGaa                              >  4:55355/1‑149 (MQ=255)                                                                                                         cTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATCGGaa                              <  2:154542/149‑1 (MQ=255)                                                                                                          tCCATCGCAAGGTCCATTTACTCCCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCCCGCTGGCCATGACCTCGATCAAGTCACCCTGGCTCAAAGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATCGGAAt                             <  7:215686/149‑1 (MQ=255)                                                                                                          tCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATCGGAAt                             >  2:166735/1‑149 (MQ=255)                                                                                                            cAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATCGGAAt                             <  8:13065/147‑1 (MQ=255)                                                                                                              gcgcAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATCGGAATCTgg                         <  2:40200/149‑1 (MQ=255)                                                                                                              gcgcAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATCGGAATCTgg                         >  3:200527/1‑149 (MQ=255)                                                                                                                 cAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATc                                  <  6:61865/137‑1 (MQ=255)                                                                                                                 cAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCACTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATc                                  >  5:61865/1‑137 (MQ=255)                                                                                                                     gTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATCGGAATCTGGCCCGTc                   <  7:148907/148‑1 (MQ=255)                                                                                                                     gTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCAATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATCGGAATCTGGCCCGTc                   >  8:148907/1‑148 (MQ=255)                                                                                                                      tCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATCGGAATCTGGCGCGTc                   <  6:100927/147‑1 (MQ=255)                                                                                                                      tCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATCGGAATCTGGCCCGTc                   >  5:100927/1‑147 (MQ=255)                                                                                                                         aTTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATCGGAATCTGGCCCGTCGCCAg              >  6:264874/1‑149 (MQ=255)                                                                                                                                 gCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTTGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATCGGAATCTGGCCCGTCGCCAGGTGCAGGt      <  4:200527/149‑1 (MQ=255)                                                                                                                                 gCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATCGGAATCTGGCCCGTCGCCAGGTGCAGGt      <  3:215753/149‑1 (MQ=255)                                                                                                                                   cTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATCGGAATCTGGCCCGTCGCCAGGTGCAGGTCt    <  3:55355/149‑1 (MQ=255)                                                                                                                                      gggCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATCGGAATCTGGCCCGTCGCCAGGTGCAGGTCTGa  <  5:264874/148‑1 (MQ=255)                                                                                                                                                ccggcgctGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGgcg                                         >  8:157741‑M2/9‑99 (MQ=255)                                                                                                                                                ccggcgctGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGgcg                                         <  7:157741‑M2/91‑1 (MQ=255)                                                                                                                                                        |                                                                                                                                  ACTCACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAA‑‑AGCGCCCAAGCG‑‑‑CCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATCGGAATCTGGCCCGTCGCCAGGTGCAGGTCTGA  >  NC_002947/5817621‑5817896

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.