New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5830989 =	45 (1.070)	3 (0.080)	3/242	NT	8.1%	coding (1155/1485 nt)	ftsY	signal recognition particle protein translocation receptor GTPase
	?	NC_002947	5831052 =	26 (0.660)					coding (1092/1485 nt)	ftsY	signal recognition particle protein translocation receptor GTPase

CTCTGGTTGAAGTACTTGGCCTGACTGATGGCGTTCTGGCCGGTGCCGGCGTCAAGCACCAGCAGCACCTCGTGCGGCGCCTCAACGTCGAGCTTGCCGATGACCCGGCGAACCTTCTTCAGCTCTTCCATCAGGTTGTCTTTGGTGTGCAGGCGGCCGGCAGTGTCGGCGATCAGCACGTCGACGCCACGCGCCTTGGCGGCCTGCACGGCATCGAAGATTACCGAAGCAGAGTCGGCGCCCGTGTGCTGGGCGATCACCGGAATCTGGTTACGCTCGCCCCACACC  >  NC_002947/5830843‑5831130                                                                                                                                                   |                                                                                                                                              tggaaggcaagaaggtcatgctggctgccggtgataccttccgcgcagcggcggtcgagcagttgcaggtgtggggcgagcgtaaccagattccggtgatcgcccagcacacgggcgccgactctgcttcggtaatcttcgatgccGTg                                                                                                                                             <  8:43093‑M1/3‑1 (MQ=255)   gaaggcaagaaggtcatgctggctgccggtgataccttccgcgcagcggcggtcgagcagttgcaggtgtggggcgagcgtaaccagattccggtgatcgcccagcacacgggcgccgactctgcttcggtaatcttcgatgccGTg                                                                                                                                             >  4:210660‑M1/145‑147 (MQ=255)    tGGTTGAAGTACTTGGCCTGACTGATGGCGTTCTGGCCGGTGCCGGCGTCAAGCACCAGCAGCACCTCGTGCGGCGCCTCAACGTCGAGCTTGCCGATGACCCGGCGAACCTTCTTCAGCTCTTCCATCAGGTTGTCTTTGGTGTGc                                                                                                                                            <  6:30879/147‑1 (MQ=255)    aaggcaagaaggtcatgctggctgccggtgataccttccgcgcagcggcggtcgagcagttgcaggtgtggggcgagcgtaaccagcttccggtgctcgcccagcccacgggcgccgactctgcgtcggtaatcgtcgatgccGTGCAg                                                                                                                                          <  6:51201‑M1/6‑1 (MQ=255)      gTTGAAGTACTTGGCCTGACTGATGGCGTTCTGGCCGGTGCCGGCGTCAAGCACCAGCAGCACCTCGTGCGGCGCCTCAACGTCGAGCTTGCCGATGACCCGGCGAACCTTCTTCAGCTCTTCCATCAGGTTGTCTTTGGTGTGCAg                                                                                                                                          <  5:153787/147‑1 (MQ=255)               cTTGGCCTGACTGATGGCGTTCTGGCCGGTGCCGGCGTCAAGCACCAGCAGCACCTCGTGCGGCGCCTCAACGTCGAGCTTGCCGATGACCCGGCGAACCTTCTTCAGCTCTTCCATCAGGTTGTCTTTGGTGTGCAGGCGGCCGGCa                                                                                                                                <  7:11633/148‑1 (MQ=255)               cTTGGCCTGACTGATGGCGTTCTGGCCGGTGCCGGCGTCAAGCACCAGCAGCACCTCGTGCGGCGCCTCAACGTCGAGCTTGCCGATGACCCGGCGAACCTTCTTCAGCTCTTCCATCAGGTTGTCTTTGGTGTGCAGGCGGCCGGCa                                                                                                                                <  4:23455/148‑1 (MQ=255)                        actgaTGGCGTTCTGGCCGGTGCCGGCGTCAAGCACCAGCAGCACCTCGTGCGGCGCCTCAACGTCGAGCTTGCCGATGACCCGGCGAACCTTCTTCAGCTCTTCCATCAGGTTGTCTTTGGTGTGCAGGCGGCCGGCAGTGTCGGCGa                                                                                                                      <  3:3112/149‑1 (MQ=255)                         ctgaTGGTGTTTTGGCCGGTGCCGGCGTCAAGCACCAGCAGCACCTCGTGCGGCGCCTCAACGTCGAGCTTGCCGATGACCCGGCGAACCTTCTTCAGCTCTTCCATCAGGTTGTCTTTGGTGTGCAGGCGGCCGGCAGTGTCGGCGAt                                                                                                                     >  3:187120/1‑149 (MQ=255)                               gCGTTCTGGCCGGTGCCGGCGTCAAGCACCAGCAGCACCTCGTGCGGCGCCTCAACGTCGAGCTTGCCGATGACCCGGCGAACCTTCTTCTGCTCTTCCATCAGGTTGTCTTTGGTGTGCAGGCGGCCGGCAGTGTCGGc                                                                                                                        <  1:198253/140‑1 (MQ=255)                               gCGTTCTGGCCGGTGCCGGCGTCAAGCACCAGCAGCACCTCGTGCGGCGCCTCAACGTCGAGCTTGCCGATGACCCGGCGAACCTTCTTCAGCTCTTCCATCAGGTTGTATTTGGTGTGCAGGCGGCAGGCAGAGTCGGc                                                                                                                        >  2:198253/1‑140 (MQ=255)                                cGTTCTGGCCGGTGCCGGCGTCAAGCACCAGGAGCACCTCGTGCGGCGCCTCAACGTCGAGCTTGCCGATGACCCGGCGAACCTTCTTCAGCTCTTCCATCAGGTTGTCTTTGGTGTGCAGGCGGCCGGCAGTGTCGGCGATCAGCAc                                                                                                               <  7:79539/148‑1 (MQ=255)                                       gCCGGTGCCGGCGTCAAGCACCAGCAGCACCTCGTGCGGCGCCTCAACGTCGAGCTTGCCGATGACCCGGCGAACCTTCTTCAGCTCTTCCATCAGGTTGTCTTTGGTGTGCAGGCGGCCGGCAGTGTCGGCGATCAGCACGTCGACGc                                                                                                       >  6:252780/1‑149 (MQ=255)                                           gTGCCGGCGTCAAGCACCAGCAGCACCTCGTGCGGCGCCTCAACGTCGAGCTTGCCGATGACCCGGCGAACCTTCTTCAGCTCTTCCATCAGGTTGTCTTTGGTGTGCAggc                                                                                                                                        <  1:206693/112‑1 (MQ=255)                                           gTGCCGGCGTCAAGCACCAGCAGCACCTCGTGCGGCGCCTCAACGTCGAGCTTGCCGATGACCCGGCGAACCTTCTTCAGCTCTTCCATCAGGTTGTCTTTGGTGTGCAggc                                                                                                                                        >  2:206693/1‑112 (MQ=255)                                               cGGCGTCAAGCACCAGCAGCACCTCGTGCGGCGCCTCAACGTCGAGCTTGCCGATGACCCGGCGAACCTTCTTCAGCTCTTCCATCAGGTTGTCTTTGGTGTGCAGGCGGCCGGCAGTGTCgg                                                                                                                         <  7:235019/123‑1 (MQ=255)                                               cGGCGTCAAGCACCAGCAGCACCTCGTGCGGCGCCTCAACGTCGAGCTTGCCGATGACCCGGCGAACCTTCTTCAGCTCTTCCATCAGGTTGTCTTTGGTGTGCAGGCGGCCGGCAGTGTCgg                                                                                                                         >  8:235019/1‑123 (MQ=255)                                                ggtgTCAAGCACCAGCAGCACCTCGTGCGGCGCCTCAACGTCGAGCTTGCCGATGACCCGGCGAACCTTCTTCAGCTCTTCCATCAGGTTGTCTTTGGTGTGCAGGCGGCCGGCAGTGTCGGCGATCAGCACGTCGACGCCACGCGCCt                                                                                              >  5:156498/4‑149 (MQ=255)                                                 gCGTCAAGCACCAGCAGCACCTCGTGCGGCGCCTCAACGTCGAGCTTGCCGATGACCCGGCGAACCTTCTTCAGCTCTTCCATCAGGTTGTCTTTGGTGTGCAGGCGGCCGGCAGTGTCGGCGATCAGCACGTCGACGCCACGCGCCtt                                                                                             <  5:252780/149‑1 (MQ=255)                                                        gCACCAGCAGCACCTCGTGCGGCGCCTCAACGTCGAGCTTGCCGATGACCCGGCGAACCTTCTTCAGCTCTTCCATCAGGTTGTCTTTGGTGTGCAGGCGGCCGGCAGTGTCGGCGATCAGCACGTCGACGCCACGCGCCTTGGCGGcc                                                                                      >  5:42992/1‑149 (MQ=255)                                                        gCACCAGCAGCACCTCGTGCGGCGCCTCAACGTCGAGCTTGCCGATGACCCGGCGAACCTTCTTCAGCTCTTCCATCAGGTTGTCTTTGGTGTGCAGGCGGCCGGCAGTGTCGGCGATCAGCACGTCGACGCCACGCGCCTTGGCGGcc                                                                                      >  3:8051/1‑149 (MQ=255)                                                         cACCAGCAGCACCTCGTGCGGCGCCTCAACGTCGAGCTTGCCGATGACCCGGCGAACCTTCTTCAGCTCTTCCATCAGGTTGTCTTTGGTGTGCAGGCGGCCGGCAgt                                                                                                                              >  2:231317/1‑108 (MQ=255)                                                         cACCAGCAGCACCTCGTGCGGCGCCTCAACGTCGAGCTTGCCGATGACCCGGCGAACCTTCTTCAGCTCTTCCATCAGGTTGTCTTTGGTGTGCAGGCGGCCGGCAgt                                                                                                                              <  1:231317/108‑1 (MQ=255)                                                         cACCAGCAGCACCTCGTGCGGCGCCTCAACGTCGAGCTTGCCGATGACCCGGCGAACCTTCTTCAGCTCTTCCATCAGGTTGTCTTTGGTGTGCAGGCGGCCGGCAGTGTCGGCGATCAGCACGTCGACGCCACGCGCCTTGGCGGCCt                                                                                     >  4:38632/1‑149 (MQ=255)                                                             agttgcaggtgtggggcgagcgtaaccagattccggtgatcgcccagcacacgggcgccgactctgcttcggtaatcttcgatgccGTGCAGGCGGCCGGCAGTGTCGGCGATCAGCACGTCGACGCCACGCGCCTTGGCGGCCTGc                                                                                   <  5:151566‑M1/61‑1 (MQ=255)                                                             agttgcaggtgtggggcgagcgtaaccagattccggtgatcgcccagcacacgggcgccgactctgcttcggtaatcttcgatgccGTGCAGGCGGCCGGCAGTGTCGGCGATCAGCACGTCGACGCCACGCGCCTTGGCGGCCTGc                                                                                   >  6:151566‑M1/87‑147 (MQ=255)                                                              gttgcaggtgtggggcgagcgcaaccagattccggtgatcgcccagcacacgggcgccgactctgcttcggtaatcttcgatgccGTGCAGGCGGCCGGCAGTGTCGGCGATCAGCACGTCGACGCCACGCGCCTTGGCGGCCTGCACg                                                                                >  5:276640‑M1/86‑149 (MQ=255)                                                              gcagcaCCTCGTGCGGCGCCTCAACGTCGAGCTTGCCGATGACCCGGCGAACCTTCTTCAGCTCTTCCATCAGGTTGTCTTTGGTGTGCAGGCGGCCGGCAGTGTCGGCGATCAGCACGTCGACGCCACGCGCCTTGGCGGCCTGCACg                                                                                >  1:39003/1‑149 (MQ=255)                                                              gcagcaCCTCGTGCGGCGCCTCAACGTCGAGCTTGCCGATGACCCGGCGAACCTTCTTCAGCTCTTCCATCAGGTTGTCTTTGGTGTGCAGGCGGCCGGCAGTGTCGGCGATCAGCACGTCGACGCCACGCGCCTTGGCGGCCTGCACg                                                                                <  6:236123/149‑1 (MQ=255)                                                                  caCCTCGTGCGGCGCCTCAACGTCGAGCTTGCCGATGACCCGGCGAACCTTCTTCAGCTCTTCCATCAGGTTGTCTTTGGTGTGCAGGCGGCCGGCAGTGTCGGCGATCAGCACGTCGACGCCACGCGCCTTGGCGGCCTGCACGGCAt                                                                            <  2:39003/149‑1 (MQ=255)                                                                     cTCGTGCGGCGCCTCAACGTCGAGCTTGCCGATGACCCGGCGAACCTTCTTCAGCTCTTCCATCAGGTTGTCTTTGGTGTGCAGGCGGCCGGCAGTGTCGGCGATCAGCACGTCGACGCCACGCGCCTTGGCGGCCTGCACGGCATCGa                                                                         <  6:156498/149‑1 (MQ=255)                                                                        gTGCGGCGCCTCAACGTCGAGCTTGCCGATGACCCGGCGAACCTTCTTCAGCTCTTCCATCAGGTTGTCTTTGGTGTGCAGGCGGCCGGCAGTGTCGGCGATCAGCACGTCGACGCCACGCGCCTTGGCGGCCTGCACGGCATCGAAGa                                                                      <  4:177923/149‑1 (MQ=255)                                                                            ggcgCCTCAACGTCGAGCTTGCCGATGACCCGGCGAACCTTCTTCAGCTCTTCCATCAGGTTGTCTTTGGTGTGCAGGCGGCCGGCAGTGTCGGCGATCAGCACGTCGACGCCACGCGCCTTGGCGGCCTGCACGGCATCGAAGATTAc                                                                  <  6:42992/149‑1 (MQ=255)                                                                             gcgcCTCAACGTCGAGCTTGCCGATGACCCGGCGAACCTTCTTCAGCTCTTCCATCAGGTTGTCTTTGGTGTGCAGGCGGCCGGCAGTGTCGGCGATCAGCACGTCGACGCCACGCGCCTTGGCGGCCTGCACGGCATCGAAGATTAcc                                                                 >  7:19743/1‑149 (MQ=255)                                                                                    aaCGTCGAGCTTGCCGATGACCCGGCGAACCTTCTTCAGCTCTTCCATCAGGTTGTCTTTGGTGTGCAGGCGGCCGGCAGTGTCGGCGATCAGCACGTCGACGCCACGCGCCTTGGCGGCCTGCACGGCATCGAAGATTACCGAAg                                                             >  7:62112/1‑146 (MQ=255)                                                                                    aaCGTCGAGCTTGCCGATGACCCGGCGAACCTTCTTCAGCTCTTCCATCAGGTTGTCTTTGGTGTGCAGGCGGCCGGCAGTGTCGGCGATCAGCACGTCGACGCCACGCGCCTTGGCGACCTGCACGGCATCGAAGATTACCGAAGc                                                            <  5:6743/147‑1 (MQ=255)                                                                                     aCGTCGAGCTTGCCGATGACCCGGCGAACCTTCTTCAGCTCTTCCATCAGGTTGTCTTTGGTGTGCAGGCGGCCGGCAGTGTCGGCGATCAGCACGTCGACGCCACGCGcc                                                                                               <  7:225397/111‑1 (MQ=255)                                                                                     aCGTCGAGCTTGCCGATGACCCGGCGAACCTTCTTCAGCTCTTCCATCAGGTTGTCTTTGGTGTGCAGGCGGCCGGCAGTGTCGGCGATCAGCACGTCGACGCCACGCGcc                                                                                               >  8:225397/1‑111 (MQ=255)                                                                                       gTCGAGCTTGCCGATGACCCGGCGAACCTTCTTCAGCTCTTCCATCAGGTTGTCTTTGGTGTGCAGGCGGCCGGCAGTGTCGGCGATCAGCACGTCGACGCCACGCGCCTCGGCGGCCTGCACGGCATCGAAGATTACCGAAGCAGAGt                                                       >  5:125438/1‑149 (MQ=255)                                                                                       gTCGAGCTTGCCGATGACCCGGCGAACCTTCTTCAGCTCTTCCATCAGGTTGTCTTTGGTGTGCAGGCGGCCAGCAGTGTCGGCGATCAGCACGTCGACGCCACGCGCCTTGGCGGCCTGCACGGCATCGAAGATTACCGAAGCaga                                                         <  6:145128/147‑1 (MQ=255)                                                                                       gTCGAGCTTGCCGATGACCCGGCGAACCTTCTTCAGCTCTTCCATCAGGTTGTCTTTGGTGTGCAGGCGGCCAGCAGTGTCGGCGATCAGCACGTCGACGCCACGCGCCTTGGCGGCCTGCACGGCATCGAAGATTACCGAAGCaga                                                         >  5:145128/1‑147 (MQ=255)                                                                                        tCGAGCTTGCCGATGACCCGGCGAACCTTCTTCAGCTCTTCCATCAGGTTGTCTTTGGTGTGCAGGCGGCCGGCAGTGTCGGCGATCAGCACGTCGACGCCACGCGCCTTGGCGGCCTGCACGGCATCGAAGATTACCGAAGCAGAGTc                                                      <  8:62112/149‑1 (MQ=255)                                                                                         cGAGCTTGCCGATGACCCGGCGAACCTTCTTCAGCTCTTCCATCAGGTTGTCTTTGGTGTGCAGGCGGCCGGCAGTGTCGGCGATCAGCACGTCGACGCCACGCGCCTTGGCGGCCTGCAc                                                                                 >  1:57858/1‑121 (MQ=255)                                                                                         cGAGCTTGCCGATGACCCGGCGAACCTTCTTCAGCTCTTCCATCAGGTTGTCTTTGGTGTGCAGGCGGCCGGCAGTGTCGGCGATCAGCACGTCGACGCCACGCGCCTTGGCGGCCTGCAc                                                                                 <  2:57858/121‑1 (MQ=255)                                                                                                         ccGGCGAACCTTCTTCAGCTCTTCCATCAGGTTGTCTTTGGTGTGCAGGCGGCCGGCAGTGTCGGCGATCAGCACGTCGACGCCACGCGCCTTGGCGGCCTGCACGGCATCGAAGATTACCGAAGCAGAGTCGGCGCCCGTTTGCTggg                                     >  2:13136/1‑149 (MQ=255)                                                                                                          cGGCGAACCTTCTTCAGCTCTTCCATCAGGTTGTCTTTGGTGTGCAGGCGGCCGGCAGTGTCGGCGATCAGCACGTCGACGCCACGCGCCTCGGCGGCCTGCACGGCATCGAAGATTACCGAAGCAGAGTCGGCGCCCGTGTGCTGGGc                                    <  6:125438/149‑1 (MQ=255)                                                                                                                aCCTTCTTCAGCTCTTCCATCAGGTTGTCTTTGGTGTGCAGGCGGCCGGCAGTGTCGGCGATCAGCACGTCGACGCCACGCGCCTTGGCGGCCTGCACGGCATCGAAGATTACCGAAGCAGAGTCGGCGCCCGTGTGCTGGGCGATCAc                              <  3:38632/149‑1 (MQ=255)                                                                                                                 ccTTCTTCAGCTCTTCCATCAGGTTGTCTTTGGTGTGCAGGCGGCCGGCAGTGTCGGCGATCAGCACGTCGACGCCACGCGCCTTGGCGGCCTGCACGGCATCg                                                                          >  1:249327/1‑104 (MQ=255)                                                                                                                 ccTTCTTCAGCTCTTCCATCAGGTTGTCTTTGGTGTGCAGGCGGCCGGCAGTGTCGGCGATCAGCACGTCGACGCCACGCGCCTTGGCGGCCTGCACGGCATCg                                                                          <  2:249327/104‑1 (MQ=255)                                                                                                                          gCTCTTCCATCAGGTTGTCTTTGGTGTGCAGGCGGCCGGCAGTGTCGGCGATCAGCACGTCGACGCCACGCGCCTTGGCGGCCTGCACGGCATCGAAGATTACCGAAGCAGAGTCGGCGCCCGTGTGCTGGGCGATCACCGGAATCTgg                    >  4:164906/1‑149 (MQ=255)                                                                                                                              ttCGATCAGGTTGTCTTTGGTGTGCAGGCGGCCGGCAGTGTCGGCGATCAGCACGTCGACGCCACGCGCCTTGGCGGCCTGCACTGCATCGAAGATTACCTAAGCAGAGTGGGCGCCCGTGTGCTGGGCTATCTCCTGAATCTGGtt                  <  4:187120/147‑1 (MQ=255)                                                                                                                                            cTTTGGTGTGCAGGCGGCCGGCAGTGTCGGCGATCAGCACGTCGACGCCACGCGCCTTGGCGGCCTGCACGGCATCGAAGATTACCGAAGCAGAGTCGGCGCCCGTGTGCTGGGCGATCACCGGAATCTGGTTACGCTCGCCCCACAcc  >  5:50769/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                              CTCTGGTTGAAGTACTTGGCCTGACTGATGGCGTTCTGGCCGGTGCCGGCGTCAAGCACCAGCAGCACCTCGTGCGGCGCCTCAACGTCGAGCTTGCCGATGACCCGGCGAACCTTCTTCAGCTCTTCCATCAGGTTGTCTTTGGTGTGCAGGCGGCCGGCAGTGTCGGCGATCAGCACGTCGACGCCACGCGCCTTGGCGGCCTGCACGGCATCGAAGATTACCGAAGCAGAGTCGGCGCCCGTGTGCTGGGCGATCACCGGAATCTGGTTACGCTCGCCCCACACC  >  NC_002947/5830843‑5831130

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.