New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5867208 =	39 (0.920)	5 (0.120)	5/246	NT	11.9%	coding (498/972 nt)	thyA	thymidylate synthase
	?	NC_002947	5867248 =	37 (0.920)					coding (458/972 nt)	thyA	thymidylate synthase

GGAGCGGATGTAGAGGGTCAGGGAAATTTCCCTGGTCTCGACATTCGGGTGGAACTGGTACAGCAAGTGACACGGTGGCAGTGCCATTTCGTCCAGTTGCGCGCAGTTCCAGCCGTGGAACAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCGGCCATTTCGATGGCCGCCGGGTTGCTCAGCG  >  NC_002947/5867061‑5867347                                                                                                                                                    |                                                                                                                                            gatctatggtgtgcaatggcgccagtggccgggctacaagcgcatcccgctgagcaacccggcggccatcgaaatggccgagcaagccggtttccgccgcattgcccaggacgaagaggacggcgtctcgttcgtcatcctgtacaag                                                                                                                                             >  2:270615‑M1/148‑148 (MQ=255) gatctatggtgtgcaatggcgccagtggccgggctacaagcgcatcccgctgagcaacccggcggccatcgaaatggccgagcaagccggtttccgccgcattgcccaggacgaagaggacggcgtcgcgttcgtcatcctgtacaagg                                                                                                                                            >  8:91822‑M1/148‑149 (MQ=255) gatctatggtgtgcaatggcgccagtggccgggctacaagcgcatcccgctgagcaacccggcggccatcgaaatggccgagcaagccggtttccgccgcattgcccaggacgaagaggacggcgtcgcgttcgtcatcctgtacaagg                                                                                                                                            >  1:26604‑M1/148‑149 (MQ=255)  gAGCGGATGTAGAGGGTCAGGGAAATTTCCCTGGTCTCGACATTCGGGTGGAACTGGTACAGCAAGTGACACGGTGGCAGTGCCATTTCGTCCAGTTGCGCGCAGTTCCAGCCGTGGAACAGGATGCGGCGGCTACCCGGGTCGTTgg                                                                                                                                            <  4:209626/148‑1 (MQ=255)  atctatggtgtgcaatggcgccagtggccgggctacaagcgcatcccgctgagcaacccggcggccatcgaaatggccgagcaagccggtttccgccgcattgcccaggacgaagaggacggcgtcgcgttcgtcatcctgtacaaGGc                                                                                                                                           <  4:40401‑M1/3‑1 (MQ=255)      ggATGTAGAGGGTCAGGGAAATTTCCCTGGTCTCGACATTCGGGTGGAACTGGTACAGCAAGTGACACGGTGGCAGTGCCATTTCGTCCAGTTGCGCGCAGTTCCAGCCGTGGAACAGGATGCGGCGGCTACCCGGGTCGTTGGCGATg                                                                                                                                       <  6:270764/149‑1 (MQ=255)       tggtgtgcaatggcgccagtggccgggctacaagcgcatcccgctgagcaacccggcggccatcgaaatggccgagcaagccggtttccgccgcattgcccaggacgaagaggacggcgtcgcgttcgtcatcctgtacaaGGCg                                                                                                                                          >  4:103580‑M1/142‑145 (MQ=255)       taTGTAGAGGGTCAGGGAAATTTCCCTGGTCTCGACATTCTGGTGGAACTGGTACAGCAAGTGACACGGTGGCAGTGCCATTTCGTCCAGTTGCGCGCAGTTCCAGCCGTGGAACAGGATGCGGAGGTTACACGGGTCGTTGGCGAttg                                                                                                                                      <  8:101918/148‑3 (MQ=255)             gagGGTCAGGGAAATTTCCCTGGTCTCGACATTCGGGTGGAACTGGTACAGCAAGTGACACGGTGGCAGTGCCATTTCGTCCAGTTGCGCGCAGTTCCAGCCGTGGAACAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTcc                                                                                                                                 <  4:117853/148‑1 (MQ=255)                    aGGGAAATTTCCCTGGTCTCGACATTCGGGTGGAACTGGTACAGCAAGTGACACGGTGGCAGTGCCATTTCGTCCAGTTGCGCGCAGTTCCAGCCGTGGAACAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTg                                                                                                                         >  5:19162/1‑149 (MQ=255)                        aaaTTTCCCTGGTCTCGACATTCGGGTGGAACTGGTACAGCAAGTGACACGGTGGCAGTGCCATTTCGTCCAGTTGCGCGCAGTTCCAGCCGTGGAACAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCg                                                                                                                      >  2:182436/1‑148 (MQ=255)                                  ctacaagcgcatcccgctgagcaacccggcggccatcgaaatggccgagcaagccggtttccgccgcattgcccaggacgaagaggacggcgtcgcgttcgtcatcctgtacaaGGCGATCGA‑‑CCAGGCACTGGCGTACCTGGTCGATc                                                                                                         >  8:241424‑M1/115‑149 (MQ=255)                                     ctcGACATTCGGGTGGAACTGGTACAGCAAGTGACACGGTGGCAGTGCCATTTCGTCCAGTTGCGCGCAGTTCCAGCCGTGCAACAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCg                                                                                                        >  3:43444/1‑149 (MQ=255)                                      tcGACATTCGGGTGGAACTGGTACAGCAAGTGACACGGTGGCAGTGCCATTTCGTCCAGTTGCGCGCAGTTCCAGCCGTGGAACAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGc                                                                                                       >  1:264699/1‑149 (MQ=255)                                      tcGACATTCGGGTGGAACTGGTACAGCAAGTGACACGGTGGCAGTGCCATTTCGTCCAGTTGCGCGCAGTTCCAGCCGTGGAACAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGc                                                                                                       >  4:68071/1‑149 (MQ=255)                                      aagcgcatcccgctgagcaacccggcggccatcgaaatggccgagcaagccggtttccgccgcattgcccaggacgaagaggacggcgtcgcgttcgtcatcctgtacaaGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGc                                                                                                       <  6:196652‑M1/39‑1 (MQ=255)                                         cgcatcccgctgagcaacccggcggccatcgaaatggccgagcaagccggtttccgccgcattgcccaggacgaagaggacggcgtcgcgttcgtcatcctgtacaaGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCtt                                                                                                    >  5:196652‑M1/108‑149 (MQ=255)                                                      aCTGGTACAGCAAGTGACACGGTGGCAGTGCCATTTCGTCCAGTTGCGCGCAGTTCCAGCCGTGGAACAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGAc                                                                                        >  3:123877/1‑148 (MQ=255)                                                          gTACAGCAAGTGACACGGTGGCAGTGCCATTTCGTCCAGTTGCGCGCAGTCCCAGCCGTGGAACAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAAcg                                                                                   >  5:131461/1‑149 (MQ=255)                                                             cAGCAAGTGACACGGTGGCAGTGCCATTTCGTCCAGTTGCGCGCAGTTCCAGCCGTGGAACAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGa                                                                                >  4:145227/1‑149 (MQ=255)                                                               gCAAGTGACACGGTGGCAGTGCCATTTCGTCCAGTTGCGCGCAGTTCCAGCCGTGGAACAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACg                                                                              <  3:68071/149‑1 (MQ=255)                                                                    tGACACGGTGGCAGTGCCATTTCGTCCAGTTGCGCGCAGTTCCAGCCGTGGAACAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTc                                                                         <  2:89027/149‑1 (MQ=255)                                                                    atcgaaatggccgagcaagccggtttccgccgcattgcccaggacgaagaggacggcgtcgcgttcgtcatcctgtacaaGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGcc                                                                                                      <  2:199696‑M1/40‑1 (MQ=255)                                                                    atcgaaatggccgagcaagccggtttccgccgcattgcccaggacgaagaggacggcgtcgcgttcgtcatcctgtacaaGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGcc                                                                                                      >  1:199696‑M1/81‑120 (MQ=255)                                                                      acacGGTGGCAGTGCCATTTCGTCCAGTTGCGCGCAGTTCCAGCCGTGGAACAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCct                                                                       >  3:205055/1‑149 (MQ=255)                                                                          ggTGGCAGTGCCATTTCGTCCAGTTGCGCGCAGTTCCAGCCGTGGAACAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTc                                                                   >  1:108424/1‑149 (MQ=255)                                                                              gCAGTGCCATTTCGTCCAGTTGCGCGCAGTTCCAGCCGTGGAACAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTcc                                                               <  6:19162/149‑1 (MQ=255)                                                                                aGTGCCATTTCGTCCAGTTGCGCGCAGTTCCAGCCGTGGAACAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTg                                                             <  4:123877/149‑1 (MQ=255)                                                                                    ccATTTCGTCCAGTTGCGCGCAGTTCCAGCCGTGGAACAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGc                                                          >  2:150833/1‑148 (MQ=255)                                                                                          cGTCCAGTTGCGCGCAGTTCCAGCCGTGGAACAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATgcg                                                    <  3:18811/148‑1 (MQ=255)                                                                                           gTCCAGTTGCGCGCTGTTCCTGCGGTGTAACAGTATGCGGCGGCAACCGGGGTCGTTGGCGTTGGTGTCCTGGCAGTGGGGTACCTGGTCTATCGCTTTGTACTGTATGACTAACGCGACGCCGTCCTCTTCGTCCTGGGCAATgcggc                                                  <  2:264699/149‑1 (MQ=255)                                                                                                     gcgcAGTTCCAGCCGTGGAACAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGc                                        >  5:212138/1‑149 (MQ=255)                                                                                                         aGTTCCAGCCGTGGAACAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGc                                    >  4:261140/1‑149 (MQ=255)                                                                                                           ttCCAGCCGTGGAACAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGc                                    <  3:56696/147‑1 (MQ=255)                                                                                                           ttCCAGCCGTGGAACAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGc                                    >  4:56696/1‑147 (MQ=255)                                                                                                              cAGCCGTGGAACAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCgg                                <  6:212138/148‑1 (MQ=255)                                                                                                               aGCCGTGGAACAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCGGc                               >  1:109781/1‑148 (MQ=255)                                                                                                               aGCCGTGGAACAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCGGc                               >  3:227030/1‑148 (MQ=255)                                                                                                                   gTGGAACAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCGGCCAttt                          <  1:182436/149‑1 (MQ=255)                                                                                                                       aaCAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCGGCCATTTCGAt                      <  6:131461/149‑1 (MQ=255)                                                                                                                       aaCAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCGGCCATTTCGAt                      <  5:5148/149‑1 (MQ=255)                                                                                                                        aCAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGAAGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCGGCCATTTCGATg                     >  4:32456/1‑149 (MQ=255)                                                                                                                        aCAGGAGGCGGCGGCTACCGGGGGCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGTAAACCGGCTTGCTCGGCCATTTCGAt                      <  2:108424/148‑1 (MQ=255)                                                                                                                          aGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCGGCCATTTCGATGgc                   >  3:40401/1‑149 (MQ=255)                                                                                                                                       tACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCGGCCATTTCGATGGCCGCCGGGt           >  7:136515/1‑144 (MQ=255)                                                                                                                                       tACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCGGCCATTTCGATGGCCGCCGGGt           <  8:136515/144‑1 (MQ=255)                                                                                                                                         cccGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCGGCCATTTCGATGGCCGCCGGGTTGCTCAg    >  8:13194/1‑149 (MQ=255)                                                                                                                                          ccGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGATGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCGGCCATTTCGATGGCCGCCGGGTTGCTCAGc   >  8:193989/1‑149 (MQ=255)                                                                                                                                          ccGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCGGCCATTTCGATGGCCGCCGGGTTGCTCAGc   >  8:144552/1‑149 (MQ=255)                                                                                                                                           cGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCGGCCATTTCGATGGCCGCCGGGTTGCTCAGCg  <  4:205055/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                            GGAGCGGATGTAGAGGGTCAGGGAAATTTCCCTGGTCTCGACATTCGGGTGGAACTGGTACAGCAAGTGACACGGTGGCAGTGCCATTTCGTCCAGTTGCGCGCAGTTCCAGCCGTGGAACAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCGGCCATTTCGATGGCCGCCGGGTTGCTCAGCG  >  NC_002947/5867061‑5867347

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.