New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5867208 =	39 (0.920)	5 (0.120)	5/246	NT	11.9%	coding (498/972 nt)	thyA	thymidylate synthase
	?	NC_002947	5867248 =	37 (0.920)					coding (458/972 nt)	thyA	thymidylate synthase

ACATTCGGGTGGAACTGGTACAGCAAGTGACACGGTGGCAGTGCCATTTCGTCCAGTTGCGCGCAGTTCCAGCCGTGGAACAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCGGCCATTTCGATGGCCGCCGGGTTGCTCAGCGGGATGCGCTTGTAGCCCGGCCACTGGCGCCATTGCACACCATAGATC  >  NC_002947/5867101‑5867394                                                                                                                                                    |                                                                                                                                                   cgcatcccgctgagcaacccggcggccatcgaaatggccgagcaagccggtttccgccgcattgcccaggacgaagaggacggcgtcgcgttcgtcatcctgtacaaGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCtt                                                                                                                                                   >  5:196652‑M1/108‑149 (MQ=255)              aCTGGTACAGCAAGTGACACGGTGGCAGTGCCATTTCGTCCAGTTGCGCGCAGTTCCAGCCGTGGAACAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGAc                                                                                                                                       >  3:123877/1‑148 (MQ=255)                  gTACAGCAAGTGACACGGTGGCAGTGCCATTTCGTCCAGTTGCGCGCAGTCCCAGCCGTGGAACAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAAcg                                                                                                                                  >  5:131461/1‑149 (MQ=255)                     cAGCAAGTGACACGGTGGCAGTGCCATTTCGTCCAGTTGCGCGCAGTTCCAGCCGTGGAACAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGa                                                                                                                               >  4:145227/1‑149 (MQ=255)                       gCAAGTGACACGGTGGCAGTGCCATTTCGTCCAGTTGCGCGCAGTTCCAGCCGTGGAACAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACg                                                                                                                             <  3:68071/149‑1 (MQ=255)                            tGACACGGTGGCAGTGCCATTTCGTCCAGTTGCGCGCAGTTCCAGCCGTGGAACAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTc                                                                                                                        <  2:89027/149‑1 (MQ=255)                              acacGGTGGCAGTGCCATTTCGTCCAGTTGCGCGCAGTTCCAGCCGTGGAACAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCct                                                                                                                      >  3:205055/1‑149 (MQ=255)                                  ggTGGCAGTGCCATTTCGTCCAGTTGCGCGCAGTTCCAGCCGTGGAACAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTc                                                                                                                  >  1:108424/1‑149 (MQ=255)                                      gCAGTGCCATTTCGTCCAGTTGCGCGCAGTTCCAGCCGTGGAACAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTcc                                                                                                              <  6:19162/149‑1 (MQ=255)                                        aGTGCCATTTCGTCCAGTTGCGCGCAGTTCCAGCCGTGGAACAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTg                                                                                                            <  4:123877/149‑1 (MQ=255)                                            ccATTTCGTCCAGTTGCGCGCAGTTCCAGCCGTGGAACAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGc                                                                                                         >  2:150833/1‑148 (MQ=255)                                                  cGTCCAGTTGCGCGCAGTTCCAGCCGTGGAACAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATgcg                                                                                                   <  3:18811/148‑1 (MQ=255)                                                   gTCCAGTTGCGCGCTGTTCCTGCGGTGTAACAGTATGCGGCGGCAACCGGGGTCGTTGGCGTTGGTGTCCTGGCAGTGGGGTACCTGGTCTATCGCTTTGTACTGTATGACTAACGCGACGCCGTCCTCTTCGTCCTGGGCAATgcggc                                                                                                 <  2:264699/149‑1 (MQ=255)                                                             gcgcAGTTCCAGCCGTGGAACAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGc                                                                                       >  5:212138/1‑149 (MQ=255)                                                                 aGTTCCAGCCGTGGAACAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGc                                                                                   >  4:261140/1‑149 (MQ=255)                                                                   ttCCAGCCGTGGAACAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGc                                                                                   >  4:56696/1‑147 (MQ=255)                                                                   ttCCAGCCGTGGAACAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGc                                                                                   <  3:56696/147‑1 (MQ=255)                                                                      cAGCCGTGGAACAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCgg                                                                               <  6:212138/148‑1 (MQ=255)                                                                       aGCCGTGGAACAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCGGc                                                                              >  1:109781/1‑148 (MQ=255)                                                                       aGCCGTGGAACAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCGGc                                                                              >  3:227030/1‑148 (MQ=255)                                                                           gTGGAACAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCGGCCAttt                                                                         <  1:182436/149‑1 (MQ=255)                                                                               aaCAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCGGCCATTTCGAt                                                                     <  6:131461/149‑1 (MQ=255)                                                                               aaCAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCGGCCATTTCGAt                                                                     <  5:5148/149‑1 (MQ=255)                                                                                aCAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGAAGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCGGCCATTTCGATg                                                                    >  4:32456/1‑149 (MQ=255)                                                                                aCAGGAGGCGGCGGCTACCGGGGGCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGTAAACCGGCTTGCTCGGCCATTTCGAt                                                                     <  2:108424/148‑1 (MQ=255)                                                                                  aGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCGGCCATTTCGATGgc                                                                  >  3:40401/1‑149 (MQ=255)                                                                                               tACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCGGCCATTTCGATGGCCGCCGGGt                                                          <  8:136515/144‑1 (MQ=255)                                                                                               tACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCGGCCATTTCGATGGCCGCCGGGt                                                          >  7:136515/1‑144 (MQ=255)                                                                                                 cccGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCGGCCATTTCGATGGCCGCCGGGTTGCTCAg                                                   >  8:13194/1‑149 (MQ=255)                                                                                                  ccGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGATGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCGGCCATTTCGATGGCCGCCGGGTTGCTCAGc                                                  >  8:193989/1‑149 (MQ=255)                                                                                                  ccGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCGGCCATTTCGATGGCCGCCGGGTTGCTCAGc                                                  >  8:144552/1‑149 (MQ=255)                                                                                                   cGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCGGCCATTTCGATGGCCGCCGGGTTGCTCAGCg                                                 <  4:205055/149‑1 (MQ=255)                                                                                                          aaggcgatcgaccaggtacgccagtgcctggacaccatcgccTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCGGCCATTTCGATGGCCGCCGGGTTGCTCAGCGGGATgcg                                          >  5:196652‑M2/43‑149 (MQ=255)                                                                                                            ggcgatcgaccaggtacgccagtgcctggacaccatcgccTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCGGCCATTTCGAt                                                                     <  2:199696‑M2/80‑1 (MQ=255)                                                                                                            ggcgatcgaccaggtacgccagtgcctggacaccatcgccTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCGGCCATTTCGAt                                                                     >  1:199696‑M2/41‑120 (MQ=255)                                                                                                             gcgatcgaccaggtacgccagtgcctggacaccatcgccTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCGGCCATTTCGATGGCCGCCGGGTTGCTCAGCGGGATGCGCtt                                       <  6:196652‑M2/110‑1 (MQ=255)                                                                                                             GCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCGGCCATTTCGATGGCCGCCGGGTTGCTCAGCGGGATGCGCtt                                       >  2:109781‑M1/1‑149 (MQ=255)                                                                                                             GCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCGGCCATTTCGATGGCCGCCGGGTTGCTCAGCGGGATGCGCtt                                       >  7:144552‑M1/1‑149 (MQ=255)                                                                                                                 gatcgaccaggtacgccagtgcctggtcgatcgccTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCGGCCATTTCGATGGCCGCCGGGTTGCTCAGCGGGATGCGCTTGTAg                                   >  8:241424‑M2/36‑149 (MQ=255)                                                                                                                      tCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCGGCCATTTCGATGGCCGCCGGGTTGCTCAGCGGGATGCGCTTGTAGCCCg                               <  3:261140/148‑1 (MQ=255)                                                                                                                        cAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCGGCCATTTCGATGGCCGCCGGGTTGCTCAGCGGGATGCGCTTGTAGCCCGGc                             >  6:153887/1‑148 (MQ=255)                                                                                                                                 gCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCGGCCATTTCGATGGCCGCCGGGTTGCTCAGCGGGATGCGCTTGTAGCCCGGCCCCTGgcgc                    >  4:10443/1‑148 (MQ=255)                                                                                                                                   gtgccTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCGGCCATTTCGATGGCCGCCGGGTTGCTCAGCGGGATGCGCTTGTAGCCCGGCCACTGGCGCCAt                 <  5:269341/146‑1 (MQ=255)                                                                                                                                       cTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCGGCCATTTCGATGGCCGCCGGGTTGCTCAGCGGGATGCGCTTGTAGCCCGGCCACTGGCGCCATTGca             <  7:241424/149‑1 (MQ=255)                                                                                                                                       cTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCGGCCATTTCGATGGCCGCCGGGTTGCTCAGCGGGATGCGCTTGTAGCCCGGCCACTGGCGCCATTGca             >  5:254197/1‑149 (MQ=255)                                                                                                                                             gATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCGGCCATTTCGATGGCCGCCGGGTTGCTCAGCGGGATGCGCTTGTAGCCCGGCCACTGGCGCCATTGCACACCa        >  7:57421/1‑148 (MQ=255)                                                                                                                                             gATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCGGCCATTTCGATGGCCGCCGGGTTGCTCAGCGGGATGCGCTTGTAGCCCGGCCACTGGCGCCATTGCACACCAt       <  4:227030/149‑1 (MQ=255)                                                                                                                                                cgccTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCGGCCATTTCGATGGCCGCCGGGTTGCTCAGCGGGATGCGCTTGTAGCCCGGCCACTGGCGCCATTGCACACCa        >  4:103580‑M2/5‑145 (MQ=255)                                                                                                                                                 gccTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCGGCCATTTCGATGGCCGCCGGGTTGCTCAGCGGGATGCGCTTGTAGCCCGGCCACTGGCGCCATTGCACACCATAGAt   <  4:40401‑M2/146‑1 (MQ=255)                                                                                                                                                  ccTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCGGCCATTTCGATGGCCGCCGGGTTGCTCAGCGGGATGCGCTTGTAGCCCGGCCACTGGCGCCATTGCACACCATAGAtc  >  1:26604‑M2/3‑149 (MQ=255)                                                                                                                                                  ccTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCGGCCATTTCGATGGCCGCCGGGTTGCTCAGCGGGATGCGCTTGTAGCCCGGCCACTGGCGCCATTGCACACCATAGAtc  >  8:91822‑M2/3‑149 (MQ=255)                                                                                                                                                   cTTGTACAGGATGACGAACGAGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCGGCCATTTCGATGGCCGCCGGGTTGCTCAGCGGGATGCGCTTGTAGCCCGGCCACTGGCGCCATTGCACACCATAGAtc  >  2:270615‑M2/2‑148 (MQ=255)                                                                                                                                                    |                                                                                                                                                   ACATTCGGGTGGAACTGGTACAGCAAGTGACACGGTGGCAGTGCCATTTCGTCCAGTTGCGCGCAGTTCCAGCCGTGGAACAGGATGCGGCGGCTACCCGGGTCGTTGGCGATGGTGTCCAGGCACTGGCGTACCTGGTCGATCGCCTTGTACAGGATGACGAACGCGACGCCGTCCTCTTCGTCCTGGGCAATGCGGCGGAAACCGGCTTGCTCGGCCATTTCGATGGCCGCCGGGTTGCTCAGCGGGATGCGCTTGTAGCCCGGCCACTGGCGCCATTGCACACCATAGATC  >  NC_002947/5867101‑5867394

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.