New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6017044 =	48 (1.140)	3 (0.080)	3/242	NT	6.8%	coding (290/423 nt)	PP_5267	cytochrome c5
	?	NC_002947	6017093 =	37 (0.930)					coding (241/423 nt)	PP_5267	cytochrome c5

AGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCCTTTCAGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATTTCATCCGGCGTTTTGGCTCCCCCGCCACCCGCTGCAGCGGCCACTTCCA  >  NC_002947/6016902‑6017185                                                                                                                                               |                                                                                                                                              ctggagccggttggccaggtgtgcgtccagggccaggagtgcaaaggcatggaagtggccgctgcagcgggtggcgggggagccaaaacgccggatgaaatcatcgccaagcactgcaacgcctgccatggcagcggcttgcTCGgcgc                                                                                                                                         >  6:44553‑M1/143‑149 (MQ=255)   cTGTAAATCACAACCCGGACATTTTCTTGATCGCCCCTTTCAGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGt                                                                                                                                       >  8:151477/1‑149 (MQ=255)         aTCACAACCCGGACATTTTCTTGATCGCCCCTTTCAGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTc                                                                                                                                 <  5:57997/149‑1 (MQ=255)            acaACCCGGACATTTTCTTGATCGCCCCTTTCAGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTcc                                                                                                                                <  6:191187/147‑1 (MQ=255)            acaACCCGGACATTTTCTTGATCGCCCCTTTCAGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTcc                                                                                                                                >  5:191187/1‑147 (MQ=255)                 ccGGACATTTTCTTGATCGCCCCTTTCAGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACgcggc                                                                                                                         >  4:196456/1‑149 (MQ=255)                  cGGACATTTTCTTGATCGCCCCTTTCAGGTCTTCATCCGAGCAGTCTGCAAAGGTGCCCTTTGGCGGCATGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACgcggcg                                                                                                                        >  1:222533/1‑149 (MQ=255)                   ggACATTTTCTTGATCGCCCCTTTCAGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGcggcgg                                                                                                                       >  4:159130/1‑149 (MQ=255)                    gACATTTTCTTGATCGCCCCTTTCAGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGgt                                                                                                                      >  4:233933/1‑149 (MQ=255)                      cATTTTCTTGATCGCCCCTTTCAGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGgtgt                                                                                                                    <  6:265638/149‑1 (MQ=255)                               gATCGCCCCTTTCAGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAAt                                                                                                             <  4:201396/147‑1 (MQ=255)                                      ccTTTCAGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGgcgc                                                                                                    >  4:63460/1‑149 (MQ=255)                                           aaaggcatggaagtggccgctgcagcgggtggcgggggagccaaaacgccttatgaaatcatcgccaagcactgcaacgcctgccatggcagcggcttgcTCGGCGCGTTCTTTCCACGCGGCTGTGTCACCAATTTTAGGCGCGCCGa                                                                                               >  1:85860‑M1/101‑149 (MQ=255)                                            aGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAg                                                                                              >  3:170000/1‑149 (MQ=255)                                             aggcatggaagtggccgctgcagcgggtggcgggggagccaaaacgccggatgaaatcatcgccaagcactgcaacgcctgccatggcagcggcttgcTCGgc                                                                                                                                           <  6:155394‑M1/5‑1 (MQ=255)                                             aggcatggaagtggccgctgcagcgggtggcgggggagccaaaacgccggatgaaatcatcgccaagcactgcaacgcctgccatggcagcggcttgcTCGgc                                                                                                                                           >  5:155394‑M1/99‑103 (MQ=255)                                                    aTCCGAGCAGTCTGCACACGTGCCCTTTGGCGGCAAGGCCTTGATACCACTAATCGCCTTCGCCAGGATGCCATCCAGAACGACCTGGTCGTCGGCGCGTTCTTTCCACCCGGCGCTGTCACCAATTTTAGGCGCGCCGAGCAAgaagc                                                                                      >  5:72288/1‑145 (MQ=255)                                                     tCCGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCt                                                                                     <  3:63460/149‑1 (MQ=255)                                                     tCCGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCt                                                                                     >  4:95529/1‑149 (MQ=255)                                                       cGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGc                                                                                   >  3:173810/1‑149 (MQ=255)                                                        tggccgctgcagcgggtggcgggggagccaaaacgccggatgaaatcatcgccaagcactgcaacgcctgccatggcagcggcttgcTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCaa                                                                                           >  8:144373‑M1/88‑140 (MQ=255)                                                        tggccgctgcagcgggtggcgggggagccaaaacgccggatgaaatcatcgccaagcactgcaacgcctgccatggcagcggcttgcTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCaa                                                                                           <  7:144373‑M1/53‑1 (MQ=255)                                                            aGTCTGCAAAGGTGCCCTTTGGCGGCATGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATgg                                                                              <  2:222533/149‑1 (MQ=255)                                                                  cacaGGTGCCCTTTGGCGGCATGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGtt                                                                                                                                      >  3:57565/1‑87 (MQ=255)                                                                  cacaGGTGCCCTTTGGCGGCATGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGtt                                                                                                                                      <  4:57565/87‑1 (MQ=255)                                                                       gTGCCCTTTGGCGGCATGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCa                                                                   <  4:173810/149‑1 (MQ=255)                                                                        tGCCCTTTGGCGGCATGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAg                                                                  <  4:170000/149‑1 (MQ=255)                                                                          cgcTTTGGCGGCTTGGCGTTGATACCAGTAATGGCGTTGGGCAGGTGGCCATCCAGTCCGCCTTGGTGGTCTGCGCGTTCTTTCCTCGCGGCGGTGTCTCCTATTTTAGGCGCTCCTTGCAAGCCGCTGCGTTGGGAGTCGTTGCAGt                                                                 <  6:72288/146‑1 (MQ=255)                                                                          cccTTTGGCGGCATGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTg                                                                >  3:135540/1‑149 (MQ=255)                                                                           ccTTTGGCGGCATGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGc                                                               >  7:80648/1‑149 (MQ=255)                                                                                 gcggcATGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGc                                                          >  1:8536/1‑148 (MQ=255)                                                                                    gcATGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCgat                                                       >  5:84010/1‑148 (MQ=255)                                                                                       tGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGAtt                                                   <  3:95529/149‑1 (MQ=255)                                                                                              gATACCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATTTCATCCg                                            >  5:233371/1‑149 (MQ=255)                                                                                                 aCCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATTTCATCCGGCg                                         >  5:163547/1‑149 (MQ=255)                                                                                                     gTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATTTCATCCGGCGtttt                                     <  3:233933/149‑1 (MQ=255)                                                                                                      tAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGTCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGc                                                               <  3:145100/122‑1 (MQ=255)                                                                                                      tAATGGCCTTGGCCAGGATGCCATCCAGACAGCCCTGGTGGTCGGCGAGTTCTTTCAACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCAGCTGCCATGGAAGGCGTTGCAGTGc                                                               >  4:145100/1‑122 (MQ=255)                                                                                                        aTGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATTTCATCCGGCGTTTTgg                                   <  6:233371/148‑1 (MQ=255)                                                                                                            ccTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATTTCATCCGGCGTTTTGGCTccc                              >  6:53342/1‑149 (MQ=255)                                                                                                                ggCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCTTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATTTCATCCGGCGTTTTGGCTCCCCCg                           <  7:64065/148‑1 (MQ=255)                                                                                                                  ccAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATTTCATCCGGCGTTTTGGCTCCCCCGCCa                        >  8:9204/1‑149 (MQ=255)                                                                                                                          ccATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACGAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATTTCATCCGGCGTTTTGGCTCCCCCGCCACCCGCTg                 <  4:135540/148‑1 (MQ=255)                                                                                                                          ccATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATTTCATCCGGCGTTTTGGCTCCCCCGCCACCCGCTg                 <  7:9204/148‑1 (MQ=255)                                                                                                                           cATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGa                                                                                               >  4:24386/1‑69 (MQ=255)                                                                                                                           cATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGa                                                                                               <  3:24386/69‑1 (MQ=255)                                                                                                                            aTCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCgatg                                                      <  7:55035/109‑1 (MQ=255)                                                                                                                            aTCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCgatg                                                      >  8:55035/1‑109 (MQ=255)                                                                                                                               cAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATTTCATCCGGCGTTTTGGCTCCCCCGCCACCCGCTGCAGCg            <  3:196456/148‑1 (MQ=255)                                                                                                                                   ccGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATTTCATCCGGCGTTTTGGCTCCCCCGCCACCCGCTGCAGCGGCCAc       <  6:84010/149‑1 (MQ=255)                                                                                                                                    cGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATTTCATCCGGCGTTTTGGCTCCCCCGCCACCCGCTGCAGCGGCCACt      >  5:63556/1‑149 (MQ=255)                                                                                                                                      cccTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATTTCATCCGGCGTTTTGGCTCCCCCGCCACCCGCTGCAGCGGCCACTTc    <  8:80648/149‑1 (MQ=255)                                                                                                                                       ccTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATTTCATCCGGCGTTTTGGCTCCCCCGCCACCCGCTGCAGCGGCCACTTct   <  1:78897/149‑2 (MQ=255)                                                                                                                                        cTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATTTCATCCGGCGTTTTGGCTCCCCCGCCACCCGCTGCAGCGGCCACTTCCa  <  6:63556/149‑1 (MQ=255)                                                                                                                                               |                                                                                                                                              AGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCCTTTCAGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATTTCATCCGGCGTTTTGGCTCCCCCGCCACCCGCTGCAGCGGCCACTTCCA  >  NC_002947/6016902‑6017185

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.