New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6017044 =	48 (1.140)	3 (0.080)	3/242	NT	6.8%	coding (290/423 nt)	PP_5267	cytochrome c5
	?	NC_002947	6017093 =	37 (0.930)					coding (241/423 nt)	PP_5267	cytochrome c5

AGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATTTCATCCGGCGTTTTGGCTCCCCCGCCACCCGCTGCAGCGGCCACTTCCATGCCTTTGCACTCCTGGCCCTGGACGCACACCTGGCCAACCGGCTCCAGGCGTTTG  >  NC_002947/6016945‑6017241                                                                                                                                                     |                                                                                                                                                     aGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAg                                                                                                                                                      >  3:170000/1‑149 (MQ=255)         aTCCGAGCAGTCTGCACACGTGCCCTTTGGCGGCAAGGCCTTGATACCACTAATCGCCTTCGCCAGGATGCCATCCAGAACGACCTGGTCGTCGGCGCGTTCTTTCCACCCGGCGCTGTCACCAATTTTAGGCGCGCCGAGCAAgaagc                                                                                                                                              >  5:72288/1‑145 (MQ=255)          tCCGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCt                                                                                                                                             >  4:95529/1‑149 (MQ=255)          tCCGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCt                                                                                                                                             <  3:63460/149‑1 (MQ=255)            cGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGc                                                                                                                                           >  3:173810/1‑149 (MQ=255)             tggccgctgcagcgggtggcgggggagccaaaacgccggatgaaatcatcgccaagcactgcaacgcctgccatggcagcggcttgcTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCaa                                                                                                                                                   >  8:144373‑M1/88‑140 (MQ=255)             tggccgctgcagcgggtggcgggggagccaaaacgccggatgaaatcatcgccaagcactgcaacgcctgccatggcagcggcttgcTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCaa                                                                                                                                                   <  7:144373‑M1/53‑1 (MQ=255)                 aGTCTGCAAAGGTGCCCTTTGGCGGCATGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATgg                                                                                                                                      <  2:222533/149‑1 (MQ=255)                            gTGCCCTTTGGCGGCATGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCa                                                                                                                           <  4:173810/149‑1 (MQ=255)                             tGCCCTTTGGCGGCATGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAg                                                                                                                          <  4:170000/149‑1 (MQ=255)                               cgcTTTGGCGGCTTGGCGTTGATACCAGTAATGGCGTTGGGCAGGTGGCCATCCAGTCCGCCTTGGTGGTCTGCGCGTTCTTTCCTCGCGGCGGTGTCTCCTATTTTAGGCGCTCCTTGCAAGCCGCTGCGTTGGGAGTCGTTGCAGt                                                                                                                         <  6:72288/146‑1 (MQ=255)                               cccTTTGGCGGCATGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTg                                                                                                                        >  3:135540/1‑149 (MQ=255)                                ccTTTGGCGGCATGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGc                                                                                                                       >  7:80648/1‑149 (MQ=255)                                      gcggcATGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGc                                                                                                                  >  1:8536/1‑148 (MQ=255)                                         gcATGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCgat                                                                                                               >  5:84010/1‑148 (MQ=255)                                            tGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGAtt                                                                                                           <  3:95529/149‑1 (MQ=255)                                                   gATACCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATTTCATCCg                                                                                                    >  5:233371/1‑149 (MQ=255)                                                      aCCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATTTCATCCGGCg                                                                                                 >  5:163547/1‑149 (MQ=255)                                                          gTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATTTCATCCGGCGtttt                                                                                             <  3:233933/149‑1 (MQ=255)                                                           tAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGTCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGc                                                                                                                       <  3:145100/122‑1 (MQ=255)                                                           tAATGGCCTTGGCCAGGATGCCATCCAGACAGCCCTGGTGGTCGGCGAGTTCTTTCAACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCAGCTGCCATGGAAGGCGTTGCAGTGc                                                                                                                       >  4:145100/1‑122 (MQ=255)                                                             aTGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATTTCATCCGGCGTTTTgg                                                                                           <  6:233371/148‑1 (MQ=255)                                                                 ccTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATTTCATCCGGCGTTTTGGCTccc                                                                                      >  6:53342/1‑149 (MQ=255)                                                                     ggCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCTTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATTTCATCCGGCGTTTTGGCTCCCCCg                                                                                   <  7:64065/148‑1 (MQ=255)                                                                       ccAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATTTCATCCGGCGTTTTGGCTCCCCCGCCa                                                                                >  8:9204/1‑149 (MQ=255)                                                                               ccATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACGAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATTTCATCCGGCGTTTTGGCTCCCCCGCCACCCGCTg                                                                         <  4:135540/148‑1 (MQ=255)                                                                               ccATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATTTCATCCGGCGTTTTGGCTCCCCCGCCACCCGCTg                                                                         <  7:9204/148‑1 (MQ=255)                                                                                 aTCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCgatg                                                                                                              >  8:55035/1‑109 (MQ=255)                                                                                 aTCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCgatg                                                                                                              <  7:55035/109‑1 (MQ=255)                                                                                    cAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATTTCATCCGGCGTTTTGGCTCCCCCGCCACCCGCTGCAGCg                                                                    <  3:196456/148‑1 (MQ=255)                                                                                        ccGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATTTCATCCGGCGTTTTGGCTCCCCCGCCACCCGCTGCAGCGGCCAc                                                               <  6:84010/149‑1 (MQ=255)                                                                                         cGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATTTCATCCGGCGTTTTGGCTCCCCCGCCACCCGCTGCAGCGGCCACt                                                              >  5:63556/1‑149 (MQ=255)                                                                                           cccTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATTTCATCCGGCGTTTTGGCTCCCCCGCCACCCGCTGCAGCGGCCACTTc                                                            <  8:80648/149‑1 (MQ=255)                                                                                            ccTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATTTCATCCGGCGTTTTGGCTCCCCCGCCACCCGCTGCAGCGGCCACTTct                                                           <  1:78897/149‑2 (MQ=255)                                                                                             cTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATTTCATCCGGCGTTTTGGCTCCCCCGCCACCCGCTGCAGCGGCCACTTCCa                                                          <  6:63556/149‑1 (MQ=255)                                                                                                ttgctcggcgcgcctaaaattggtgacaccgccgcgtggaaagaacgcgccgaGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATTTCATCCGGCGTTTTGGCTCCCCCGCCACCCGCTGCAGCGGCCa                                                                >  8:144373‑M2/54‑140 (MQ=255)                                                                                                ttgctcggcgcgcctaaaattggtgacaccgccgcgtggaaagaacgcgccgaGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATTTCATCCGGCGTTTTGGCTCCCCCGCCACCCGCTGCAGCGGCCa                                                                <  7:144373‑M2/87‑1 (MQ=255)                                                                                                    tcggcgcgcctaaaattggtgacacagccgcgtggaaagaacgcgccgaGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATTTCATAAGGCGTTTTGGCTCCCCCGCCACCCGCTGCAGCGGCCACTTCCATGCCttt                                                   >  1:85860‑M2/50‑149 (MQ=255)                                                                                                      GGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATTTCATCCGGCGTTTTGGCTCCCCCGCCACCCGCTGCAGCGGCCACTTCCATGCCTTTg                                                  >  5:53342‑M1/1‑148 (MQ=255)                                                                                                       GCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATTTCATCCGGCGTTTTGGCTCCCCCGCCACCCGCTGCAGCGGCCACTTCCATGCCTTTGCa                                                <  6:240270‑M1/149‑1 (MQ=255)                                                                                                        CGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATTTCATCCGGCGTTTTGGCTCCCCCGCCACCCGCTGCAGCGGCCACTTc                                                            >  1:119185‑M1/1‑136 (MQ=255)                                                                                                        CGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATTTCATCCGGCGTTTTGGCTCCCCCGCCACCCGCTGCAGCGGCCACTTc                                                            <  2:119185‑M1/136‑1 (MQ=255)                                                                                                                     cgcgGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATTTCATCCGGCGTTTTGGCTCCCCCGCCACCCGCTGCAGCGGCCACTTCCATGCCTTTGCACTCCTGGCCCTGGa                                  <  7:151477/149‑1 (MQ=255)                                                                                                                                cACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATTTCATCCGGCGTTTTGGCTCCCCCGCCACCCGCTGCAGCg                                                                    <  6:8056/104‑1 (MQ=255)                                                                                                                                cACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATTTCATCCGGCGTTTTGGCTCCCCCGCCACCCGCTGCAGCg                                                                    >  5:8056/1‑104 (MQ=255)                                                                                                                                cACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATTTCATCCGGCGTTTTGGCTCCCCCGCCACCCGCTGCAGCGGCCACTTCCATGCCTTTGCACTCCTGGCCCTGGACGCACACCTgg                       >  2:152485/1‑149 (MQ=255)                                                                                                                                 aCCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATTTCATCCGGCGTTTTGGCTCCCCCGCCACCCGCTGCAGCGGCCACTTCCATGCCTTTGCACTCCTGGCCCTGGACGCACACCTGGc                      >  1:251457/1‑149 (MQ=255)                                                                                                                                   cAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATCTCATCCGGCGTTTTGGCTCCCCCGCCACCCGCTGCAGCGGCCACTTCCATGCCTTTGCACTCCTGGCCCTGGACGCACACCTGGcc                     >  2:57368/1‑148 (MQ=255)                                                                                                                                              gcgccgaGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATTTCATCCGGCGTTTTGGCTCCCCCGCCACCCGCTGCAGCGGCCACTTCCATGCCTTTGCACTCCTGGCCCTGGACGCACACCTGGCCAACCGGCTCCAg         >  6:44553‑M2/8‑149 (MQ=255)                                                                                                                                                gccgaGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATTTCATCCGGCGTTTTGGCTCCCCCGCCACCCGCTGCAGCGGCCACTTCCATGCCt                                                     <  6:155394‑M2/98‑1 (MQ=255)                                                                                                                                                gccgaGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATTTCATCCGGCGTTTTGGCTCCCCCGCCACCCGCTGCAGCGGCCACTTCCATGCCt                                                     >  5:155394‑M2/6‑103 (MQ=255)                                                                                                                                                     gCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATTTCATCCGGCGTTTTGGCTCCCCCGCCACCCGCTGCAGCGGCCACTTCCATGCCTTTGCACTCCTGGCCCTGGACGCACACCTGGCCAACCGGCTCCAGGCGTTTg  <  5:240270/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     AGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGTTCTTTCCACGCGGCGGTGTCACCAATTTTAGGCGCGCCGAGCAAGCCGCTGCCATGGCAGGCGTTGCAGTGCTTGGCGATGATTTCATCCGGCGTTTTGGCTCCCCCGCCACCCGCTGCAGCGGCCACTTCCATGCCTTTGCACTCCTGGCCCTGGACGCACACCTGGCCAACCGGCTCCAGGCGTTTG  >  NC_002947/6016945‑6017241

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.