New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6080876	36 (0.850)	3 (0.080)	3/240	NT	8.5%	coding (820/897 nt)	PP_5332	hypothetical protein
	?	NC_002947	= 6080914	31 (0.790)					coding (858/897 nt)	PP_5332	hypothetical protein

ACCCGCATTGGAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTTTTTTACCGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGGGCAATTATCAAA  >  NC_002947/6080730‑6081019                                                                                                                                                   |                                                                                                                                                aCCCGCATTGGAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAAtgtg                                                                                                                                               >  4:122947/1‑149 (MQ=255)   ccGCATTGGAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAAtgtgtg                                                                                                                                             >  8:100239/1‑149 (MQ=255)   ccGCATTGGAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAAtgtgtg                                                                                                                                             <  4:97376/149‑1 (MQ=255)    cGCATTGGAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTgg                                                                                                                                            >  7:212609/1‑149 (MQ=255)     gCATTGGAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTggg                                                                                                                                           <  5:276918/149‑1 (MQ=255)     gCATTGGAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTgg                                                                                                                                            >  6:80214/1‑148 (MQ=255)            aaTCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGAcc                                                                                                                                     <  7:100239/148‑1 (MQ=255)                  cggATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGa                                                                                                                              <  3:122947/149‑1 (MQ=255)                      ttACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGtt                                                                                                                           >  1:20596/1‑148 (MQ=255)                          cTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGc                                                                                                                      >  5:72116/1‑149 (MQ=255)                               ccAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTggg                                                                                                                 >  3:20381/1‑149 (MQ=255)                                    agcGGCTCGCGCTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAg                                                                                                            <  5:109433/149‑1 (MQ=255)                                            gcgcTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGAt                                                                                                                                         <  5:163481/112‑1 (MQ=255)                                            gcgcTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGAt                                                                                                                                         >  6:163481/1‑112 (MQ=255)                                             cgcTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTcattcgct                                                                                                   >  5:80214‑M2/1‑141 (MQ=255)                                               cTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTgg                                                                                                 <  2:20596/149‑1 (MQ=255)                                                 cggcggTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGc                                                                                               >  2:231534/1‑149 (MQ=255)                                                  ggcggTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATAGCTGACGATGGATGGCAGCGAATGCTGTGCATCTAGACAGCGAATGactcgccccaggcttcaactccaccaggtcatcccacactttcgctgtc                                                                                                <  8:160808‑M1/147‑50 (MQ=255)                                                     ggTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTcc                                                                                           <  4:93867/149‑1 (MQ=255)                                                            tGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTgg                                                                                                 >  1:32543/1‑136 (MQ=255)                                                            tGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTgg                                                                                                 <  2:32543/136‑1 (MQ=255)                                                              gAACCCGTGGTCCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATTACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGtt                                                                                  <  4:172416/149‑1 (MQ=255)                                                                    gTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCCGGGCGTCCAGATCGGTTGTGaa                                                                             >  8:186160/1‑148 (MQ=255)                                                                         ccGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGactcgccccaggcttcaactccaccaggtcatcccacacattcgctgtctcgat                                                                                           <  8:49384‑M1/129‑55 (MQ=255)                                                                         ccGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGactcgccccaggcttcaactccaccaggtcatcccacacattcgctgtctcgat                                                                                           >  7:49384‑M1/1‑75 (MQ=255)                                                                                   cAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGc                                                             >  3:100027/1‑149 (MQ=255)                                                                                             gCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTTTTTTa                                                   >  8:130597/1‑149 (MQ=255)                                                                                                gACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTTTTTTACCg                                                <  6:72116/149‑1 (MQ=255)                                                                                                gACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTTTTTTACCg                                                <  7:130597/149‑1 (MQ=255)                                                                                                 aCATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTTTTTTACCgg                                               >  6:139794/1‑149 (MQ=255)                                                                                                         gACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTTTTTTACCGGCCTCTTcg                                       >  4:106744/1‑149 (MQ=255)                                                                                                          aCGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTTTTTTACCGGCCTCTTc                                        <  5:139794/147‑1 (MQ=255)                                                                                                          aCGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCCCTGGGCGTCCAGATCGGATGTGAAAATATCTGAGCCCTGCTCTTTTTTTACCGGACTCTAcgc                                      >  4:135886/1‑149 (MQ=255)                                                                                                               ggatgtCAGAGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTTAAAATATCTGAGCCCTGCTCTTTTTTTACCGGCCTCGTCTCGGTCt                                 >  6:18803/1‑149 (MQ=255)                                                                                                                gatggCAGCTAATGCTGTGCATCGAGACATCGAAGGTTTGGGAGTCCCTGGGGGCTTGGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGAGCGGTTGTGAAAATATATGAGCCATGCTCTTTTTTTACCGGCCTCTTCGCGTGcgt                                <  5:18803/149‑3 (MQ=255)                                                                                                                gatggCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTTTTTTACCGGCCTCTTCGCGGGc                                  >  5:122935/1‑147 (MQ=255)                                                                                                                    gCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACGTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTTTTTTACCGGCCTCTTCGCGGGCTTGcc                             <  3:135886/148‑1 (MQ=255)                                                                                                                     cAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTTTTTTACCGGCCTCTTCGCggg                                   <  1:186209/141‑1 (MQ=255)                                                                                                                     cAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTTTTTTACCGGCCTCTTCGCggg                                   >  2:186209/1‑141 (MQ=255)                                                                                                                         gAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTGGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTTTTTTACCGGCCTCTTCGCGGGCAAGCCCGCGaa                       <  8:212609/149‑1 (MQ=255)                                                                                                                          aaTGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTTTTTTACCGGCCTCTTCGCGGGCAAGCCCGCGAag                      <  6:122935/149‑1 (MQ=255)                                                                                                                              cTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCCGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTTTTTTACCGGCCTCTTCGCGGGCAAGCCCGCGAAGAGGc                  <  7:186160/149‑1 (MQ=255)                                                                                                                                    aTCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTcattcgctgtctcgatgcacagcattcgctgccatccatcgtcagccatgtccgccagctccttggcccgctcgg                                >  7:49384‑M2/1‑54 (MQ=255)                                                                                                                                    aTCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTcattcgctgtctcgatgcacagcattcgctgccatccatcgtcagccatgtccgccagctccttggcccgctcgg                                <  8:49384‑M2/129‑76 (MQ=255)                                                                                                                                         gaCAGCGAAAGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTcattcgctgtctagatgcacagcattcgctgccatccatcgtcagctatgtccgccagctccttggcccgctcggtccacgggttccagatcaccgcc         <  8:160808‑M2/147‑99 (MQ=255)                                                                                                                                            aGCGAATGactcgccccaggcttcaactccaccaggtcatcccacacattcgctgtctcgatgcacagcattcgctgccatccatcgtcagccatgtccgccagctccttggcccgctcggtccacgggttccagatcaccgccgagcg    >  5:80214‑M1/1‑8 (MQ=255)                                                                                                                                            aGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGTTTGTGAAAATATCTGAGCCCTGCTCTTTTTTTACCGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCg                <  8:62579/137‑1 (MQ=255)                                                                                                                                            aGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTTTTTTACCGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCg                >  7:62579/1‑137 (MQ=255)                                                                                                                                              cGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTTTTTTACCGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGGGCAATTATCaaa  <  4:100027/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                ACCCGCATTGGAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTTTTTTACCGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGGGCAATTATCAAA  >  NC_002947/6080730‑6081019

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.