New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 73546944 (1.040)4 (0.100) 4/244 NT 8.5% coding (106/174 nt) PP_0627 hypothetical protein
?NC_002947 = 735508 44 (1.100)coding (67/174 nt) PP_0627 hypothetical protein

CGGCCGCAAACTGCACGAGGGGAGGGCGAGCGCGAAGCAGCTCATAGCACCAGTCCACTCAGCAGGCGGCTGATGAGACCCAACCCGATGGTCACGGCCAGCACCAGCACAAGGAGCAGCCACGGCCGGAAGGGCCTGCGCTCGACTTGGTGCTGGGGGGCTCGCAGATACTCATCGACACGACGCTGATCTTCCGGGTTCAGGCGACTGGTCATGGTGGGCCTCGTCAGGTAGACGTTTGTGACTGCGCAAACGCTACAGCGTTCGCGCAGGCGCTTGAAACAAATGATAATGCT  >  NC_002947/735360‑735655
                                                                                                                                                     |                                                                                                                                                   
cggccgCAAACTGCACGAGGGGAGGGCGAGCGCGAAGCAGCTCATAGCACCAGTCCACTCAGCAGGCGGCTGATGAGACCCAACCCGATGGTCACGGCCAGCACCAGCACAAGGAGCAGCCACGGCCGGAAGGGCCTGCGCTCGACTTg                                                                                                                                                     <  2:224062/149‑1 (MQ=255)
 ggCCGCAAACTGCACGAGGGGAGGGCGAGCGCGAAGCAGCTCATAGCACCAGTCCACTCAGCAGGCGGCTGATGAGACCCAACCCGATGGTCACGGCCAGCACCAGCACAAGGAGCAGCCACGGCCGGAAGGGCCTGCGCTCGACTTGg                                                                                                                                                    <  3:104720‑M2/149‑2 (MQ=255)
    cgCAAACTGCACGAGGGGAGGGCGAGCGCGAAGCAGCTCATAGCACCAGTCCACTCAGCAGGCGGCTGATGAGACCCAACCCGATGGTCACGGCCAGCACCAGCACAAGGAGCAGCCACGGCCGGAAGGGCCTGCGCTCGACTTg                                                                                                                                                     >  6:246971/1‑145 (MQ=255)
    cgCAAACTGCACGAGGGGAGGGCGAGCGCGAAGCAGCTCATAGCACCAGTCCACTCAGCAGGCGGCTGATGAGACCCAACCCGATGGTCACGGCCAGCACCAGCACAAGGAGCAGCCACGGCCGGAAGGGCCTGCGCTCGACTTg                                                                                                                                                     <  5:246971/145‑1 (MQ=255)
      cAAACTGCACGAGGGGAGGGCGAGCGCGAAGCAGCTCATAGCACCAGTCCACTCAGCAGGCGGCTGATGAGACCCAACCCGATGGTCACGGCCAGCACCAGCACAAGGAGCAGCCACGGCCGGAAGGGCCTGCGCTCGACTTGgtgctg                                                                                                                                               >  4:131636‑M2/1‑143 (MQ=255)
          cTGCACGAGGGGCGGGCGAGCGCGAAGCAGCTCATAGCACCCGGCCACTCAGCAGGCGGCTGATGAGACCCAACCCGATGGGCACGGCCAGCACCAGCACAAGGAGCAGCCACGGCCGGAAGGGCCTGCGCTCGACTTGGTGCTggggg                                                                                                                                           <  5:223803/149‑1 (MQ=255)
          cTGCACGAGGGGAGGGCGAGCGCGAAGCAGCTCATAGCACCAGTCCACTCAGCAGGCGGCTGATGAGACCCAACCCGATGGTCACGGCCAGCACCAGCACAAGGAGCAGCCACGGCCGGAAGGGCCTGCGCTCGACTTGGTGCTggggg                                                                                                                                           <  8:226333/149‑1 (MQ=255)
          cTGCACGAGGGGAGGGCGAGCGCGAAGCAGCTCATAGCACCAGTCCACTCAGCAGGCGGCTGATGAGACCCAACCCGATGGTCACGGCCAGCACCAGCACAAGGAGCAGCCACGGCCGGAAGGGCCTGCGCTCGACTTGGTGCTggggg                                                                                                                                           <  3:18429/149‑1 (MQ=255)
             cACGAGGGGAGGGCGAGCGCGAAGCAGCTCATAGCACCAGTCCACTCAGCAGGCGGCTGATGAGACCCAACCCGATGGTCACGGCCAGCACCAGCACAAGGAGCAGCCACGGCCGGAAGGGCCTGCGCTCGACTTGGTGCTGGGGGGCt                                                                                                                                        >  6:52330/1‑149 (MQ=255)
              aCGAGGGGAGGGCGAGCGCGAAGCAGCTCATAGCACCAGTCCACTCAGCAGGCGGCTGATGAGACCCAACCCGATGGTCACGGCCAGCACCAGCACAAGGAGCAGCCACGGCCGGAAGGGCCTGCGCTCGACTTGGTGCTGGGGGGCTc                                                                                                                                       >  8:132739/1‑149 (MQ=255)
                     gagggCGAGCGCGAAGCAGCTCATAGCACCAGTCCACTCAGCAGGCGGCTGATGAGACCCAACCCGATGGTCACGGCCAGCACCAGCACAAGGAGCAGCCACGGCCGGAAGGGCCTGCGCTCGACTTGGTGCTGGGGGGCTCGCAGATa                                                                                                                                <  7:199699/149‑1 (MQ=255)
                           gAGCGCGAAGCAGCTCATAGCACCAGTCCACTCAGCAGGCGGCTGATGAGACCCAACCCGATGGTCACGGCCAGCACCAGCACAAGGAGCAGCCACGGCCGGAAGGGCCTGCGCTCGACTTGGTGCTGGGGGGCTCGCAGATACTCATc                                                                                                                          <  8:94578/149‑1 (MQ=255)
                                      agcTCATAGCACCAGTCCACTCAGCAGGCGGCTGATGAGACCCAACCCGATGGTCACGGCCAGCACCAGCACAAGGAGCAGCCACGGCCGGAAGGGCCTGCGCTCGACTTGGTGCTGGGGGGCTCGCAGATACTCATCGACACGACGCt                                                                                                               <  5:52330/149‑1 (MQ=255)
                                                aCCAGTCCACTCAGCAGGCGGCTGATGAGACCCAACCCGATGGTCACGGCCAGCACCAGCACAAGGAGCAGCCACGGCCGGAAGGGCCTGCGCTCGACTTGGTGCTGGGGGGCTCGCAGATACTCATCGACACGACGCTGATCTTCCg                                                                                                      >  8:174091/1‑148 (MQ=255)
                                                aCCAGTCCACTCAGCAGGCGGCTGATGAGACCCAACCCGATGGTCACGGCCAGCACCAGCACAAGGAGCAGCCACGGCCGGAAGGGCCTGCGCTCGACTTGGTGCTGGGGGGCTCGCAGATACTCATCGACACGACGCTGATCTTCCg                                                                                                      <  7:174091/148‑1 (MQ=255)
                                                     tCCACTCAGCAGGCGGCTGATGAGACCCAACCCGATGGTCACGGCCAGCACCAGCACAAGGAGCAGCCACGGCCGGAAGGGCCTGCGCTCGACTTGGTGCTGGGGGGCTCGCAGATACTCATCGACACGACGCTGATCTTCCGGGTTCa                                                                                                <  5:90740/149‑1 (MQ=255)
                                                       cACTCAGCAGGCGGCTGATGAGACCCAACCCGATGGTCACGGCCAGCACCAGCACAAGGAGCAGCCACGGCCGGAAGGGCCTGCGCTCGACTTGGTGCTGGGGGGCTCGCAGATACTCATCGACACGACGCTGATCTTCCGGGTTCAgg                                                                                              <  4:234314/149‑1 (MQ=255)
                                                         cTCAGCAGGCGGCTGATGAGACCCAACCCGATGGTCACGGCCAGCACCAGCACAAGGAGCAGCCACGGCCGGAAGGGCCTGCGCTCGACTTGGTGCTGGGGGGCTCGCAGATACTCATCGACACGACGCTGATCTTCCGGGTTCAGGc                                                                                             >  1:54805/1‑148 (MQ=255)
                                                          tCAGCAGGCGGCTGATGAGACCCAACCCGATGGTCACGGCCAGCACCAGCACAAGGAGCAGCCACGGCCGGAAGGGCCTGCGCTCGACTTGGTGCTGGGGGGCTCGCAGATACTCATCGACACGACGCTGATCTTCCGGGTTCAGGCGa                                                                                           >  7:251480/1‑149 (MQ=255)
                                                             gcagGCGGCTGATGAGACCCAACCCGATGGTCACGGCCAGCACCAGCACAAGGAGCAGCCACGGCCGGAAGGGCCTGCGCTCGACTTGGTGCTGGGGGGCTCGCAGATACTCATCGACACGACGCTGATCTTCCGGGTTCAGGCGACTg                                                                                        <  2:221881/149‑1 (MQ=255)
                                                                   ggcTGATGAGACCCAACCCGATGGTCACGGCCAGCACCAGCACAAGGAGCAGCCACGGCCGGAAGGGCCTGCGCTCGACTTGGTGCTGGGGGGCTCGCAGATACTCATCGACACGACGCTGATCTTCCGGGTTCAGGCGACTGGTCAtg                                                                                  >  5:130843/1‑149 (MQ=255)
                                                                             aCCCAACCCGATGGTCACGGCCAGCACCAGCACAAGGAGCAGCCACGGCCGGAAGGGCCTGCGCTCGACTTGGTGCTGGGGGGCTCGCAGATACTCATCGACACGACGCTGATCTTCCTGGTTCAGGCGACTGGTCAtgg                                                                                 <  2:13146/140‑1 (MQ=255)
                                                                             aCCCAACCCGATGGTCACGGCCAGCACCAGCACAAGGAGCAGCCACGGCCGGAAGGGCCTGCGCTCGACTTGGTGCTGGGGGGCTCGCAGATACTCATCGACACGACGCTGATCTTCCAGGTTCAGGCGACTGGTCAtgg                                                                                 >  1:13146/1‑140 (MQ=255)
                                                                              cccAACCCGATGGTCACGGCCAGCACCAGCACAAGGAGCAGCCACGGCCGGAAGGGCCTGCGCTCGACTTGGTGCTGGGGGGCTCGCAGATACTCATCGACACGACGCTGATCTTCCGGGTTCAGGCGACTGGTc                                                                                     >  1:159636/1‑135 (MQ=255)
                                                                               ccAAGCCGATGGTCACGGCCAGCACCAGCACAAGGAGCAGCCACGGCCGGAAGGGCCTGCGCTCGACTTGGTGCTGGGGGGCTCGCAGATACTCATCGACACGACGCTGATCTTCCGGGTTCAGGCGACTGGTCATGGTGGGCCTCGTc                                                                      <  3:24981/149‑1 (MQ=255)
                                                                                 aaCCCGATGGTCACGGCCAGCACCAGCACAAGGAGCAGCCACGGCCGGAAGGGCCTGCGCTCGACTTGGTGCTGGGGGGCTCGCAGATACTCATCGACACGACGCTGATCTTCCGGGTTCAGGCGACTGGTCATGGTGGGCCTCGTCAg                                                                    <  2:54805/149‑1 (MQ=255)
                                                                                  aCCCGATGGTCACGGCCAGCACCAGCACAAGGAGCAGCCACGGCCGGAAGGGCCTGCGCTCGACTTGGTGCTGGGGGGCTCGCAGATACTCATCGACACGACGCTGATCt                                                                                                          <  8:129244/110‑1 (MQ=255)
                                                                                  aCCCGATGGTCACGGCCAGCACCAGCACAAGGAGCAGCCACGGCCGGAAGGGCCTGCGCTCGACTTGGTGCTGGGGGGCTCGCAGATACTCATCGACACGACGCTGATCt                                                                                                          >  7:129244/1‑110 (MQ=255)
                                                                                       aTGGTCACGGCCAGCACCAGCACAAGGAGCAGCCACGGCCGGAAGGGCCTGCGCTCGACTTGGTGCTGGGGGGCTCGCAGATACTCATCGACACGACGCTGATCTTCCGGGTTCAGGCGACTGGTCATGGTGGGCCTCGTCAGGTAGAc                                                              <  6:130843/149‑1 (MQ=255)
                                                                                           tCACGGCCAGCACCAGCACAAGGAGCAGCCACGGCCGGAAGGGCCTGCGCTCGACTTGGTGCTGGGGGGCTCGCAGATACTCATCGACACGACGCTGATCTTCCGGGTTCAGGCGACTGGTCATGGTGGGCCTCGTCAGGTAGACGttt                                                          <  8:251480/149‑1 (MQ=255)
                                                                                           tCACGGCCAGCACCAGCACAAGGAGCAGCCACGGCCGGAAGGGCCTGCGCGCGACTTGGTGCTGGGGGGCTCGCAGATACTCATCGACACGACGCTGATCTTCCGGGTTCAGGCGACTGGTCATGGTGGGCCTCGTCAGGTAGACGttt                                                          <  7:132739/149‑1 (MQ=255)
                                                                                           tCACGGCCAGCACCAGCACAAGGAGCAGCCACGGCCGGAAGCGCCTGCGCTCGACTTGGTGCTGGGGGGCTCGCAGATACTCATCGACACGACGCTGATCTTCCGGGTTCAGGCGACTGGTCATGGTGGGCCTCGTCAGGTAGACGttt                                                          <  5:232184/149‑1 (MQ=255)
                                                                                             aCGGCCAGCACCAGCACAAGGAGCAGCCACGGCCGGAAGGGCCTGCGCTCGACTTGGTGCTGGGGGGCTCGCAGATACTCATCGACACGACGCTGATCTTCCGGGTTCAGGCGACTGGTCATGGTGGGCCTCGTCAGGTAGACGTTtgt                                                        >  3:88676/1‑149 (MQ=255)
                                                                                                 ccagcaccagcaCAAGGAGCAGCCACGGCCGGAAGGGCCTGCGCTCGACTTGGTGCTGGGGGGCTCGCAGATACTCATCGACACGACGCTGATCTTCCGGGTTCAGGCGACTGGTCATGGTGGGCCTCGTCAGGTAGACGttt                                                          <  4:118220/143‑1 (MQ=255)
                                                                                                 ccagcaccagcaCAAGGAGCAGCCACGGCCGGAAGGGCCTGCGCTCGACTTGGTGCTGGGGGGCTCGCAGATACTCATCGACACGACGCTGATCTTCCGGGTTCAGGCGACTGGTCATGGTGGGCCTCGTCAGGTAGACGttt                                                          >  3:118220/1‑143 (MQ=255)
                                                                                                 ccagcaccagcaCAAGGAGCAGCCACGGCCGGAAGGGCCTGCGCTCGACTTGGTGCTGGGGGGCTCGCAGATACTCATCGACACGACGCTGATCTTCCGGCTTCAGGCGACTGGTCATCGTGGGCCTCGTCATGAAGACGTTTGTGaat                                                    >  8:84438/1‑147 (MQ=255)
                                                                                                   agcaccagcacAAGGAGCAGCCACGGCCGGAAGGGCCTGCGCTCGACTTGgtgctggtgctggccgtgaccatcgggttgggtctcatcagccgcctgctgagtggactggtgctatgagctgcttcgcgctcgccctcccctcgtc                                                    <  4:254397‑M2/147‑98 (MQ=255)
                                                                                                        cagcacAAGGAGCAGCCACGGCCGGAAGGGCCTGCGCTCGACTTGgtgctggtgctggccgtgaccatcgggttgggtctcatcagccgcctgctgagtggactggtgctatgagctgcttcgcgctcgccctcccctcgtgcagtttg                                             <  3:93262‑M2/149‑105 (MQ=255)
                                                                                                        cagcacAAGGAGCAGCCACGGCCGGAAGGGCCTGCGCTCGACTTGGTGCTGGGGGGCTCGCAGATACTCATCGACACGACGCTGATCTTCCGGGTTCAGGCGACTGGTCATGGTGGGCCTCGTCAGGTAGACGTTTGTGACTGCGCaaa                                             >  2:34629/1‑149 (MQ=255)
                                                                                                        cagcacAAGGAGCAGCCACGGCCGGAAGGGACTGCGCTCGACATGGTGCTGGGGGGCTCGCAGATACTCATCGACACGACGCTGATCTGCCGGGTTCAGGCGACTGGTCATGGTGGGCCTCGTCAGGGAGCCGGTTGTGAATGCGCcaa                                             >  8:129023/1‑149 (MQ=255)
                                                                                                          gcacAAGGAGCAGCCACGGCCGGAAGGGCCTGCGGCTCGACTTGGTGCTGGGGGGCTCGCAGATACTCATCGACACGACGCTGATCTTCCGGGTTCAGGCGACTGGTCATGGTGGGCCTCGTCAGGTAGACGTTTGTGACTGCGCGAAc                                            >  1:36227/1‑149 (MQ=255)
                                                                                                          gcacAAGGAGCAGCCACGGCCGGAAGGGCCTGCGCTCGACTTGGTGCTGGGGGGCTCGCAGATACTCATCGACACGACGCTGATCTTCCGGGTTCAGGCGACTGGTCATGGTGGGCCTCGTCAGGTAGACGTTTGTGACTGCGCAAACg                                           >  1:5604/1‑149 (MQ=255)
                                                                                                           cacaAGGAGCAGCCACGGCCGGAAGGGCCTGCGCTCGACTTGgtgctggtgctggccgtgaccatcgggttgggtctcatcagccgcctgctgagtggactggtgctatgagctgcttcgcgctcgccctcccctcgtgcagtttgcgg                                          <  3:24866‑M2/149‑108 (MQ=255)
                                                                                                            acaAGGAGCAGCCACGGCCGGAAGGGCCTGCGCTCGACTTGGTGCTGGGGGGCTCGCAGATACTCATCGACACGACGCTGATCTTCCGGGTTCAGGCGACTGGTCATGGTGGGCCTCGTCAGGTAGACGTTTGTGACTGCGCAAACGc                                          >  2:156133/1‑148 (MQ=255)
                                                                                                                ggAGCAGCCACGGCCGGAAGGGCCTGCGCTCGACTTGGTGCTGGGGGGCTCGCAGATACTCATCGACACGACGCTGATCTTCCGGGTTCAGGCGACTGGTCATGGTGGGCCTCGTCAGGTAGACGTTTGTGACTGCGCAAACGCTACAg                                     >  6:71946/1‑149 (MQ=255)
                                                                                                                 gAGCAGCCACGGCCGGAAGGGCCTGCGCTCGACTTGGTGCTGGGGGGCTCGCAGATACTCATCGACACGACGCTGATCTTCCGGGTTCAGGCGACTGGTCATGGTGGGCCTCGTCAGGTAGACGTTTGTGACTGCGCAAACGCTACAGc                                    >  5:212084/1‑149 (MQ=255)
                                                                                                                    cagcCACGGCCGGAAGGGCCTGCGCTCGACTTGGTGCTGGGGGGCTCGCAGATACTCATCGACACGACGCTGATCTTCCGGGTTCAGGCGACTGGTCATGGTGGGCCTCGTCAGGTAGACGTTTGTGACTGCGCAAACGCTACAGCGtt                                 >  5:186706/1‑149 (MQ=255)
                                                                                                                      gcCACGGCCGGAAGGGCCTGCGCTCGACTTGGTGCTGGGGGGCTCGCAGATACTCATCGACACGACGCTGATCTTCCGGGTTCAGGCGACTGGTCATGGTGGGCCTCGTCAGGTAGACGTTTGTGACTGCGCAAACGCTACAGCGTTcg                               >  1:163053/1‑149 (MQ=255)
                                                                                                                       ccACGGCCGGCAGGCCCTGCGCTCGACTTGTTGATGGGGGGCTCGCAGATACTCATCGACCCGCCGCTGCTCTTCCGGGTTCAGGCGACTGGTCATGGTGGGCCTCGTCAGGTAGACGTTTGTGACTGCGCAAACGCTACAGCGTTcgc                              <  8:108354/149‑1 (MQ=255)
                                                                                                                         aCGGCCGGAAGGGCCTGCGCTCGACTTGGTGCTGGGGGGCTCGCAGATACTCATCGACACGACGCTGATCTTCCGGGTTCAGGCGACTGGTCATGGTGGGCCTCGTCAGGTAGACGTTTGTGACTGCGCAAACGCTACAGCGTTcgcg                             >  7:221910/1‑148 (MQ=255)
                                                                                                                          cGGCCGGAAGGGCCTGCGCTCGACTTGGTGCTGGGGGGCTCGCAGATACTCATCGACACGACGCTGATCTTCCGGGTTCAGGCGACTGGTCATGGTGGGCCTCGTCAGGTAGACGTTTGTGACTGCGCGAACGCTGTAGCGTTTGCGCa                           <  2:36227/149‑1 (MQ=255)
                                                                                                                                 aaGGGCCTGCGCTCGACTTGGTGCTGGGGGGCTCGCAGATACTCATCGACACGACGCTGATCTTCCGGGTTCAGGCGACTGGTCATGGTGGGCCTCGTCAGGTAGACGTTTGTGACTGCGCAAACGCTACAGCGTTCGCGCAGGCGCtt                    <  4:88676/149‑1 (MQ=255)
                                                                                                                                   gggCCTGCGCTCGACTTGgtgctggtgctggccgtgtccatcgggttgggtctcatcagccgcctgctgagtggactggtgctatgagctgcttcgcgctcgccctcccctcgtgcagtttgcggccggcccccagggccacgaattcc                  >  3:254397‑M2/1‑18 (MQ=255)
                                                                                                                                         gcgcTCGACTTGGTGCTGGGGGGCTCGCAGATACTCATCGACACGACGCTGATCTTCCGGGTTCAGGCGACTGGTCATGGTGGGCCTCGTCAGGTAGACGTTTGTGACTGCGCAAACGCTACAGCGTTCGCGCAGGCGCTTGAAACaaa            >  5:76922/1‑149 (MQ=255)
                                                                                                                                             cTCGACTTGGTGCTGGGGGGCTCGCAGATACTCATCGACACGACGCTGATCTTCCGGGTTCAGGCGACTGGTCATGGTGGGCCTCGTCAGGTAGACGTTTGTGACTGCGCAAACGCTACAGCGTTCGCGCAGGCGCTTGAAACAAATGa         <  8:221910/149‑1 (MQ=255)
                                                                                                                                                gACTTGGTGCTGGGGGGCTCGCAGATACTCATCGACACGACGCTGATCTTCCGGGTTCAGGCGACTGGTCATGGTGGGCCTCGTCAGGTAGACGTTTGTGACTGCGCAAACGCTACAGCGTTCGCGCAGGCGCTTGAAACAAATGATaa      >  5:57495/1‑149 (MQ=255)
                                                                                                                                                     ggTGCTGGGGGGCTCGCAGATACTCATCGACACGACGCTGATCTTCCGGGTTCAGGCGACTGGTCATGGTGGGCCTCGTCAGGTAGACGTTTGTGACTGCGCAAACGCTACAGCGTTCGCGCAGGCGCTTGAAACAAATGATAATGCt  <  6:212084/148‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                   
CGGCCGCAAACTGCACGAGGGGAGGGCGAGCGCGAAGCAGCTCATAGCACCAGTCCACTCAGCAGGCGGCTGATGAGACCCAACCCGATGGTCACGGCCAGCACCAGCACAAGGAGCAGCCACGGCCGGAAGGGCCTGCGCTCGACTTGGTGCTGGGGGGCTCGCAGATACTCATCGACACGACGCTGATCTTCCGGGTTCAGGCGACTGGTCATGGTGGGCCTCGTCAGGTAGACGTTTGTGACTGCGCAAACGCTACAGCGTTCGCGCAGGCGCTTGAAACAAATGATAATGCT  >  NC_002947/735360‑735655

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.