New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 937436	51 (1.210)	3 (0.070)	3/248	NT	6.2%	coding (8186/18933 nt)	PP_0806	surface adhesion protein
	?	NC_002947	= 937482	42 (1.040)					coding (8140/18933 nt)	PP_0806	surface adhesion protein

AGCACACGGACGGTGCTGCCTGCTTCGGCGCGGCCGCTGACGACGGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGCACCCACCACGATGCTACCGACCAGCGTGCCGTTGGCATCATGCACTTCCACGCGGCTACCAGCAGGAGCAGAACCGC  >  NC_002947/937334‑937625                                                                                                                                                     |                                                                                                                                                aGCACACGGACGGTGCTGCCTGCTTCGGCGCGGCCGCTGACGACGGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGc                                                                                                                                                 >  4:186717/1‑149 (MQ=255)          acggTGCTGCCTGCTTCGGCGCGGCCGCTGACGACGGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTc                                                                                                                                        <  7:59764/149‑1 (MQ=255)                       cTTCGGCGCGGCCGCTGACGACGGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTTCACCTGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCa                                                                                                                           <  1:21089/149‑1 (MQ=255)                       cTTCGGCGCGGCCGCTGACGACGGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCa                                                                                                                           <  7:191016/149‑1 (MQ=255)                                      tggcgacgGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCgg                                                                                                             >  4:240924/4‑148 (MQ=255)                                       gacgacGGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCcaccac                                                                                                                                           <  7:221675/117‑1 (MQ=255)                                       gacgacGGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCcaccac                                                                                                                                           >  8:221675/1‑117 (MQ=255)                                             ggTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGt                                                                                                            <  6:93151/142‑1 (MQ=255)                                             ggTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGt                                                                                                            >  5:93151/1‑142 (MQ=255)                                              gTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGcac                                                                                                    >  3:199087/1‑149 (MQ=255)                                                      gCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTg                                                                                             >  7:205390/1‑148 (MQ=255)                                                        cACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCTGCGACCTGCACCGGCAAGGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAg                                                                                          <  8:205390/149‑1 (MQ=255)                                                          cTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGt                                                                                        >  4:181890/1‑149 (MQ=255)                                                             aTTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTg                                                                                       <  4:199087/147‑1 (MQ=255)                                                             aTTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGcc                                                                                     >  7:13824/1‑149 (MQ=255)                                                                 ccAGATCGCTTGGCGCCACAGGCGCTTTGATGTCTGGTGCGGCGACCTGCTCCGGCTACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCTACTCGCGATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTc                                                                                  <  8:69857/148‑1 (MQ=255)                                                                 ccAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCg                                                                                 <  6:67757/149‑1 (MQ=255)                                                                   aGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGt                                                                                                            >  7:157174/1‑120 (MQ=255)                                                                   aGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGt                                                                                                            <  8:157174/120‑1 (MQ=255)                                                                   aGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGc                                                                               <  3:181890/149‑1 (MQ=255)                                                                     aTCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGc                                                                                                                                                 <  1:28710/81‑1 (MQ=255)                                                                     aTCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGc                                                                                                                                                 >  2:28710/1‑81 (MQ=255)                                                                       cGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGcacc                                                                            >  8:21604/1‑148 (MQ=255)                                                                        gCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGcaccca                                                                          <  7:21604/149‑1 (MQ=255)                                                                        gCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGcaccca                                                                          <  7:107731/149‑1 (MQ=255)                                                                         cTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCg                                                                                                                              >  2:120846/1‑96 (MQ=255)                                                                         cTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGTTGCCCTCGGctcccac                                                                         >  7:197404/1‑149 (MQ=255)                                                                          ttGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCt                                                                                   >  7:216585/1‑138 (MQ=255)                                                                          ttGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCt                                                                                   <  8:216585/138‑1 (MQ=255)                                                                             gcgcCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGAAACGACGAGGTGCCGTTGTTGTCGATCGCCACAACGTCCAGCAACTCGCCATTGGCCTGGGCAGGTATAAGCACCACGGTGAAAGAGCCCTCGGCACCcaccac                                                                      >  7:134132/1‑148 (MQ=255)                                                                              cgcCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGCACCCACCACGa                                                                    >  2:99076/1‑149 (MQ=255)                                                                               gcCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGCACCCACCACGAt                                                                   <  3:186717/149‑1 (MQ=255)                                                                                ccACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGCACCCACCACGATg                                                                  >  4:142150/1‑149 (MQ=255)                                                                                    aGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCcaccac                                                                                                                                           <  6:258733/72‑1 (MQ=255)                                                                                    aGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCcaccac                                                                                                                                           >  5:258733/1‑72 (MQ=255)                                                                                               tGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCcaccagacatcaccgcgcgtgtggcgccaagcgatctggcaatcagtggcgacggtaccgtcgtcagcggccgcgccgaagcaggccgcaccgt                                                   <  7:179384‑M2/149‑95 (MQ=255)                                                                                                gTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCcaccagacatcaccgcgcctgtggcgccaagcgatctggcaatcagtggcgacggtaccgtcgtcagcggccgcgccgaagcaggcagcaccgtc                                                  <  2:212984‑M2/149‑96 (MQ=255)                                                                                                     gTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGCACCCACCACGATGCTACCGACCAGCGTGCCGt                                               <  6:105980/147‑1 (MQ=255)                                                                                                     gTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGCACCCACCACGATGCTACCGACCAGCGTGCCGTTg                                             <  8:13824/149‑1 (MQ=255)                                                                                                      tGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGCACCCACCACGATGCTACCGACCAGCGTGCCGTTgg                                            <  4:71905/149‑1 (MQ=255)                                                                                                        cggcgACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCcaccagacatcaccgcgcctgtggcgccaagcgatctggcaatcagtggcgacggtaccgtcgtcagcggccgcgccgaagcaggcagcaccgtccgtgtgct                                          >  1:212984‑M2/1‑46 (MQ=255)                                                                                                             aCCTGCACCGGCAACGACTATGCTCCGTTGTTTTCGATCGCCACCACGTCCAGCAACTCGCCATTTTCCTGGGCCTGTATAATCACCAGGGTGAAGGTGCGGTCGGCACCCACAACGATGCTACCGACCTGCGTGCCGTTGGCATCTTg                                     <  2:206670/149‑1 (MQ=255)                                                                                                                     cGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGCACCCACCACGATGCTACCGACCAGCGTGCCGTTGGCATCATGCACTTCCa                             >  8:203735/1‑149 (MQ=255)                                                                                                                      gccAACGACGAGGTGCCGTTGTTGTCGATCCCCACAACGTCCATCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGCACCCACCACGATGCTACCGACCAGCGTGCCGTTGGCATCATGCACTTCCAc                            <  8:197404/147‑1 (MQ=255)                                                                                                                        cAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGCACCCACCACGATGCTACCGACCAGCGTGCCGTTgg                                            <  7:70637/131‑1 (MQ=255)                                                                                                                        cAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGCACCCACCACGATGCTACCGACCAGCGTGCCGTTgg                                            >  8:70637/1‑131 (MQ=255)                                                                                                                                    gCCGTTGTTGTCGATCGCCACCACGTACAGCAACTCGCCATTGGCCTGGTCCGGTATAAGCACAACGGTGAAGGTGCCCTCGGCACACACAACGATGCTACCGACCAGCGTGCCGTTGGCATCATGCACTTCCACGCGGCTACcagcag              >  8:4581/1‑149 (MQ=255)                                                                                                                                     ccGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGCACCCACCACGATGCTACCGACCAGCGTGCCGTTGGCATCATGCACTTCCACGCGGCTACcagcag              <  1:99076/148‑1 (MQ=255)                                                                                                                                      cGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGCACCCACCACGATGCTACCGACCAGCGTGCCGTTGGCATCATGCACTTCCACGCGGCTACCAGCAGGa            <  5:101351/149‑1 (MQ=255)                                                                                                                                        ttgttgTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGCACCCACCACGATGCTACCGACCAGCGTGCCGTTGGCATCATGCACTTCCACGCGGCTACCAGCAGGAg           >  2:121867/1‑148 (MQ=255)                                                                                                                                                gATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGCACCCACCACGATGCTACCGACCAGCGTGCCGTTGGCATCATGCACTTCCACGCGGCTACcag                 <  8:144265/134‑1 (MQ=255)                                                                                                                                                gATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGCACCCACCACGATGCTACCGACCAGCGTGCCGTTGGCATCATGCACTTCCACGCGGCTACcag                 >  7:144265/1‑134 (MQ=255)                                                                                                                                                gATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGCACCCACCACGATGCTACCGACCAGCGTGCCGTTGGCATCATGCACTTCCACGCGGCTACCAGCAGGAGCAGAACCGc  >  4:202348/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                AGCACACGGACGGTGCTGCCTGCTTCGGCGCGGCCGCTGACGACGGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGCACCCACCACGATGCTACCGACCAGCGTGCCGTTGGCATCATGCACTTCCACGCGGCTACCAGCAGGAGCAGAACCGC  >  NC_002947/937334‑937625

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.