New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1218645	43 (1.020)	4 (0.100)	3/246	NT	8.9%	coding (182/1137 nt)	PP_1064	alpha/beta family hydrolase
	?	NC_002947	= 1218666	41 (1.020)					coding (203/1137 nt)	PP_1064	alpha/beta family hydrolase

TCACCGAACTGTGGCAGCGCGCCCGAACAGAATTCATCAGACTCGCGCTCTACTGGGGATCTGCATTCTGGTGTTTCTTTCATGCGGGCTTTTTGGCTTTTTCTTTTCTTTC‑TGTTCAGCGCACCGGCGAGTTTCGC‑CGAACAGCGCTGTGACGCCCAGGTGCCGGTGCAGCGTGCCGAACTCGGTGCCGTCAGCCTGGTGTACCAGAGCGTCGGTGCGCCACGCGACCCGGCCTTGCTGCTGGTCATGGGCTTGGGCGGACAGCTGATTCATTGGCCAGACGACG  >  NC_002947/1218524‑1218809                                                                                                                                                 |                                                                                                                                                tCACCGAACTGTGGCAGCGCGCCCGAACAGAATTCATCAGACTCGCGCTCTACTGGGGATCTGCATTCTGGTGTTTCTTTCATGCGGGCTTTTTGGCTTTTTCTTTTCTTTCCTGTTCAGCGCACCGGCGAGTTTCGC‑CGAACAgcgct                                                                                                                                            >  1:179814‑M2/1‑144 (MQ=255)   aCCGAACTGTGGCAGCGCGCCCGAACAGAATTCATCAGACTCGCGCTCTACTGGGGATCTGCATTCTGGTGTTTCTTTCATGCGGGCTTTTTGGCTTTTTCTTTTCTTTC‑TGTTCAGCGCACCGGCGAGTTTCGC‑CGAACAGCGCtgtg                                                                                                                                         >  8:111556/1‑149 (MQ=255)   aCCGAACTGTGGCAGCGCGCCCGAACAGAATTCATCAGACTCGCGCTCTACTGGGGATCTGCATTCTGGTGTTTCTTTCATGCGGGCTTTTTGGCTTTTTCTTTTCTTTC‑TGTTCAGCGCACCGGCGAGTTTCGC‑CGAACAGCGCtgt                                                                                                                                          <  2:138445/148‑1 (MQ=255)    ccGAACTGTGGCAGCGCGCCCGAACAGAATTCATCAGACTCGCGCTCTACTGGGGATCTGCATTCTGGTGTTTCTTTCATGCGGGCTTTTTGGCTTTTTCTTTTCTTTC‑TGTTCAGCGCACCGGCGAGTTTCGC‑CGAACAGCGCTGTGa                                                                                                                                        >  3:151069/1‑149 (MQ=255)      gAACTGTGGCAGCGCGCCCGAACAGAATTCATCAGACTCGCGCTCTACTGGGGATCTGCATTCTGGTGTTTCTTTCATGCGGGCTTTTTGGCTTTTTCTTTTCTTTC‑TGTTCAGCGCACCGGCGAGTTTCGC‑CGAACAGCGCTGTGACg                                                                                                                                      >  4:42143/1‑149 (MQ=255)              gCAGCGCGCCCGAACAGAATTCATCAGACTCGCGCTCTACTGGGGATCTGCATTCTGGTGTTTCTTTCATGCGGGCTTTTTGGCTTTTTCTTTTCTTTC‑TGTTCAGCGCACCGGCGAGTTTCGC‑CGAACAGCGCTGTGACGCCCAGGTg                                                                                                                              >  7:22362/1‑149 (MQ=255)               cAGCGCGCCAGAACAGAATTCCTCAGACTCGCGCTCTACTGGGGATCTGCATTCTGGTGTTTCTTTCATGCGGGCTTTTTGGCTTTTTCTTTTCTTTC‑TGTTCAGCGCACCGGCGAGTTTCGC‑CGAACAGCGCTGTGACGCCCAGGTGc                                                                                                                             <  5:130117/149‑1 (MQ=255)                      cccGAACAGAATTCATCAGACTCGCGCTCTACTGGGGATCTGCATTCTGGTGTTTCTTTCATGCGGGCTTTTTGGCTTTTTCTTTTCTTTC‑TGTTCAGCGCACCGGCGAGTTTCGC‑CGAACAGCGCTGTGACGCCCAGGTGCCGGTGCa                                                                                                                      <  5:269741/149‑1 (MQ=255)                       ccGAACAGAATTCATCAGACTCGCGCTCTACTGGGGATCTGCATTCTGGTGTTTCTTTCATGCGGGCTTTTTGGCTTTTTCTTTTCTTTC‑TGTTCAGCGCACCGGCGAGTTTCGC‑CGAACAgc                                                                                                                                               >  3:10732‑M2/1‑121 (MQ=255)                       ccGAACAGAATTCATCAGACTCGCGCTCTACTGGGGATCTGCATTCTGGTGTTTCTTTCATGCGGGCTTTTTGGCTTTTTCTTTTCTTTC‑TGTTCAGCGCACCGGCGAGTTTCGC‑CGAACAgc                                                                                                                                               <  4:10732‑M2/123‑3 (MQ=255)                            cAGAATTCATCAGACTCGCGCTCTACTGGGGATCTGCATTCTGGTGTTTCTTTCATGCGGGCTTTTTGGCTTTTTCTTTTCTTTC‑TGTTCAGCGCACCGGCGAGTTTCGC‑CGAACAGCGCTGTGACGCCCAGGTGCCGGTGCAGCGTGc                                                                                                                <  3:42143/149‑1 (MQ=255)                                            cgcgCTCTACTGGGGATCTGCATTCTGGTGTTTCTTTCATGCGGGCTTTTTGGCTTTTTCTTTTCTTTC‑TGTTCAGCGCACCGGCGAGTTTCGC‑CGAACAGCGCTGTGACGCCCAGGTGCCGGTGCAGCGTGCCGAACTCGGTGCCGTc                                                                                                <  4:151069/149‑1 (MQ=255)                                             gcgcTCTACTGGGGATCTGCATTCTGGTGTTTCTTTCATGCGGGCTTTTTGGCTTTTTCTTTTCTTTC‑TGTTCAGCGCACCGGCGAGTTTCGC‑CGAACAGCGCTGTGACGCCCAGGTGCCGGTGCAGCGTGCCGAACTCGGTGCCGTc                                                                                                <  8:22362/148‑1 (MQ=255)                                              cgcTCTACTGGGGATCTGCATTCTGGTGTTTCTTTCATGCGGGCTTTTTGGCTTTTTCTTTTCTTTC‑TGTTCAGCGCACCGGCGAGTTTCGC‑CGAACAGCGCTGTGACGCCCAGGTGCCGGTGCAGCGTGCCGAACTCGGTGCCGTCAg                                                                                              <  7:60322/149‑1 (MQ=255)                                                   tACTGGGGATCTGCATTCTGGTGTTTCTTTCATGCGGGCTTTTTGGCTTTTTCTTTTCTTTC‑TGTTCAGCGCACCGGCGAGTTTCGC‑CGAACAGCGCTGTGACGCCCAGGTGCCGGTGCAGCGTGCCGAACTCGGTGCCGTCAGCCTgg                                                                                         >  7:253869/1‑149 (MQ=255)                                                       ggggATCTGCATTCTGGTGTTTCTTTCATGCGGGCTTTTTGGCTTTTTCTTTTCTTTC‑TGTTCAGCGCACCGGCGAGTTTCGC‑GGAACAGCGCTGTGACGCCCAGGTGCCGGTGCAGCGTGCCGAACTCGGTGCCGTCAGCCt                                                                                           >  4:111603/1‑143 (MQ=255)                                                       ggggATCTGCATTCTGGTGTTTCTTTCATGCGGGCTTTTTGGCTTTTTCTTTTCTTTC‑TGTTCAGCGCACCGGCGAGTTTCGC‑CGAACAGCGCTGTGACGCCCAGGTGCCGGTGCAGCGTGCCGAACTCGGTGCCGTCAGCCt                                                                                           <  3:111603/143‑1 (MQ=255)                                                        gggATCTGCATTCTGGTGTTTCTTTCATGCGGGCTTTTTGGCTTTTTCTTTTCTTTC‑TGTTCAGCGCACCGGCGAGTTTCGC‑CGAACAGCGCTGTGACGCCCAGGTGCCGGTGCAGCGTGCCGAACTCGGTGCCGTCAGCCTGGTGTAc                                                                                    >  7:54838/1‑149 (MQ=255)                                                               gCATTCTGGTGTTTCTTTCATGCGGGCTTTTTGGCTTTTTCTTTTCTTTC‑TGTTCAGCGCACCGGCGAGTTTCGC‑CGAACAGCGCTGTGACGCCCAGGTGCCGGTGCAGCGTGCCGAACTCGGTGCCGTCAGCCTGGTGTACCAGAGCg                                                                             >  4:62663/1‑149 (MQ=255)                                                                 aTTCTGGTGTTTCTTTCATGCGGGCTTTTTGGCTTTTTCTTTTCTTTC‑TGTTCAGCGCACCGGCGAGTTTCGC‑CGAACAGCGCTGTGACGCCCAGGTGCCGGTGCAGCGTGCCGAACTCGGTGCCGTCAGCCTg                                                                                          <  8:182765/134‑1 (MQ=255)                                                                  ttCTGGTGTTTCTTTCATGCGGGCTTTTTGGCTTTTTCTTTTCTTTC‑TGTTCAGCGCACCGGCGAGTTTCGC‑CGAACAGCGCTGTGACGCCCAGGTGCCGGTGCAGCGTGCCGAACTCGGTGCCGTCAGCCTGGTGTACCAGAGCGTCg                                                                          <  5:37385/149‑1 (MQ=255)                                                                    cTGGTGTTTCTTTCATGCGGGCTTTTTGGCTTTTTCTTTTCTTTC‑TGTTCAGCGCACCGGCGAGTTTCGC‑CGAACAGCGCTGTGACGCCCAGGTGCCGGTGCAGCGTGCCGAACTCGGTGCCGTCAGCCTGGTGTACCAGAGCGTCgg                                                                         <  8:253869/148‑1 (MQ=255)                                                                      ggTGTTTCTTTCATGCGGGCTTTTTGGCTTTTTCTTTTCTTTC‑TGTTCAGCGCACCGGCGAGTTTCGC‑CGAACAGCGCTGTGACGCCCAGGTGCCg                                                                                                                           >  4:22515/1‑96 (MQ=255)                                                                      ggTGTTTCTTTCATGCGGGCTTTTTGGCTTTTTCTTTTCTTTC‑TGTTCAGCGCACCGGCGAGTTTCGC‑CGAACAGCGCTGTGACGCCCAGGTGCCg                                                                                                                           <  3:22515/96‑1 (MQ=255)                                                                      ggTGTTTCTTTCATGCGGGCTTTTTGGCTTTTTCTTTTCTTTC‑TGTTCAGCGCACCGGCGAGTTTCGC‑CGAACAGCGCTGTGACGCCCAGGTGCCGGTg                                                                                                                        >  7:224545/1‑99 (MQ=255)                                                                      ggTGTTTCTTTCATGCGGGCTTTTTGGCTTTTTCTTTTCTTTC‑TGTTCAGCGCACCGGCGAGTTTCGC‑CGAACAGCGCTGTGACGCCCAGGTGCCGGTg                                                                                                                        <  8:224545/99‑1 (MQ=255)                                                                              tttcATGCGGGCTTTTTGGCTTTTTCTTTTCTTTC‑TGTTCAGCGCACCGGCGAGTTTCGC‑CGAACAGCGCTGTGACGCCCAGGTGCCGGTGCAGCGTGCCGAACTCGGTGCCGTCAGCCTGGTGTACCAGAGCGTCGGTGCGCCAcgcg                                                              >  4:134087/1‑149 (MQ=255)                                                                                  aTGCGGGCTTTTTGGCTTTTTCTTTTCTTTC‑TGTTCAGCGCACCGGCGAGTTTCGC‑CGAACAGCGCTGTGACGCCCAGGTGCCGGTGCAGCGTGCCGAACTCGGTGCCGTCAGCCTGGTGTACCAGAGCGTCGGTGCGCCACGCGAccc                                                          <  6:100055/149‑1 (MQ=255)                                                                                            tttggctttttCTTTTCTTTC‑TGTTCAGCGCACCGGCGAGTTTCGC‑CGAACAGCGCTGTGACGCCCAGGTGCCGGTGCAGCGTGCCGAACTCGGTGCCGTCAGCCTGGTGTACCAGAGCGTCGGTGCGCCACGCGACCCGGCCTtgc                                                  <  8:54838/147‑1 (MQ=255)                                                                                                  tttttCTTTTCTTTC‑TGTTCAGCGCACCGGCGAGTTTCGC‑CGAACAGCGCTGTGACGCCCAGGTGCCGGTGCAGCGTGCCGAACTCGGTGCCGTCAGCCTGGTGTACCAGAGCGTCGGTGCGCCACGCGACCCGGCCTTGCTGCTGGt                                           >  6:58005/1‑148 (MQ=255)                                                                                                    tttcttttctTTC‑TGTTCAGCGCACCGGCGAGTTTCGC‑CGAACAGCGCTGTGACGCCCAGGTGCCGGTGCAGCGTGCCGAACTCGGTGCCGTCAGCCTGGTGTACCAGAGCGTCGGTGCGCCACGCGACCCGGCCTTGCTGCTGGTc                                          <  3:134087/147‑1 (MQ=255)                                                                                                     ttcttttcttTC‑TGTTCAGCGCACCGGCGAGTTTCGC‑CGAACAGCGCTGTGACGCCCAGGTGCCGGTGCAGCGTGCCGAACTCGGTGCCGTCAGCCTGGTGTACCAGAGCGTCGGTGCGCCAc                                                                 >  4:186375/1‑123 (MQ=255)                                                                                                     ttcttttcttTC‑TGTTCAGCGCACCGGCGAGTTTCGC‑CGAACAGCGCTGTGACGCCCAGGTGCCGGTGCAGCGTGCCGAACTCGGTGCCGTCAGCCTGGTGTACCAGAGCGTCGGTGCGCCAc                                                                 <  3:186375/123‑1 (MQ=255)                                                                                                             tttc‑tGTTCAGCGCACCGGCGAGTTTCGCACGAACAGCGCTGTGACGCCCAGGTGCCGGTGCAGCGTGCCGAACTCGGTGCCGTCAGCCTGGTGTACCAGAGCGTCGGTGCGCCACGCGAcc                                                           >  1:157982/1‑122 (MQ=255)                                                                                                             tttc‑tGTTCAGCGCACCGGCGAGTTTCGC‑CGAACAGCGCTGTGACGCCCAGGTGCCGGTGCAGCGTGCCGAACTCGGTGCCGTCAGCCTGGTGTACCAGAGCGTCGGTGCGCCACGCGAcc                                                           <  2:157982/121‑1 (MQ=255)                                                                                                              ttc‑tGTTCAGCGCACCGGCGAGTTTCGC‑CGAACAGCGCTGTGACGCCCAGGTGCCGGTGCAGCGTGCCGAACTCGGTGCCGTCAGCCTGGTGTACCAGAGCGTCGGTGCGCCACGCGACCCGGCCTTGCTGCTGGTCATGGGCTTggg                               >  5:88855/1‑148 (MQ=255)                                                                                                              ttc‑tGTTCAGCGCACCGGCGAGTTTCGC‑CGAACAGCGCTGTGACGCCCAGGTGCCGGTGCAGCGTGCCGAACTCGGTGCCGTCAGCCTGGTGTACCAGAGCGTCGGTGCGCCACGCGACCCGGCCTTGCTGCTGGTCATGGGCTTggg                               <  6:88855/148‑1 (MQ=255)                                                                                                               tc‑tGTTCAGCGCACCGGCGAGTTTCGC‑CGAACAGCGCTGTGACGCCCAGGTGCCGGTGCAGCGTGCCGAACTCGGTGCCGTCAGCCTGGTGTACCAGAGCGTCGGTGCGCCACGCGACCCGGCCTTGCTGCTGGTCATgg                                      <  7:178251/140‑1 (MQ=255)                                                                                                               tc‑tGTTCAGCGCACCGGCGAGTTTCGC‑CGAACAGCGCTGTGACGCCCAGGTGCCGGTGCAGCGTGCCGAACTCGGTGCCGTCAGCCTGGTGTACCAGAGCGTCGGTGCGCCACGCGACCCGGCCTTGCTGCTGGTCATgg                                      >  8:178251/1‑140 (MQ=255)                                                                                                                  tGTTCAGCGCACCGGCGAGTTTCGC‑CGAACAgcgctgaacagaaagaaaagaaaaagccaaaaagcccgcatgaaagaaacaccagaatgcagatccccagtagagcgcgagtctgatgaattctgt                                                 <  1:175199‑M2/127‑97 (MQ=255)                                                                                                                  tGTTCAGCGCACCGGCGAGTTTCGC‑CGAACAgcgctgaacagaaagaaaagaaaaagccaaaaagcccgcatgaaagaaacaccagaatgcagatccccagtagagcgcgagtctgatgaattctgt                                                 >  2:175199‑M2/1‑31 (MQ=255)                                                                                                                   gTTCAGCGCACCGGCGAGTTTCGC‑CGAACAgcgctgaacagaaagaaaagaaaaagccaaaaagcccgcatgaaagaaacaccagaatgcagatccccagtagagcgcgagtctgatgaattctgttcgggcgcgctgccacagttcgg                          <  5:216008‑M2/149‑120 (MQ=255)                                                                                                                   gTTCAGCGCACCGGCGAGTTTCGC‑CGAACAgcgctgaacagaaagaaaagaaaaagccaaaaagcccgcatgaaagaaacaccagaatgcagatccccagtagagcgcgagtctgatgaattctgttcgggcgcgctgccacagttcgg                          <  3:1136‑M2/149‑120 (MQ=255)                                                                                                                   gTTCAGCGCACCGGCGAGTTTCGC‑CGAACAGCGCTGTGACGCCCAGGTGCCGGTGCAGCGTGCCGAACTCGGTGCCGTCAGCCTGGTGTACCAGAGCGTCGGTGCGCCACGCGACCCGGCCTTGCTGCTGGTCATGGGCTTGGGCGGAc                          >  5:271404/1‑149 (MQ=255)                                                                                                                    ttCAGCGCACCGGCGAGTTTCGC‑CGAACAGCGCTGTGACGCCCAGGTGCCGGTGCAGCGTGCCGAACTCGGTGCCGTCAGCCTGGTGTACCAGAGCGTCGGTGCGCCACGCGACCCGGCCTtgc                                                  >  5:203297/1‑124 (MQ=255)                                                                                                                    ttCAGCGCACCGGCGAGTTTCGC‑CGAACAGCGCTGTGACGCCCAGGTGCCGGTGCAGCGTGCCGAACTCGGTGCCGTCAGCCTGGTGTACCAGAGCGTCGGTGCGCCACGCGACCCGGCCTtgc                                                  <  6:203297/124‑1 (MQ=255)                                                                                                                       aGCGCACCGGCGAGTTTCGC‑CGAACAGCGCTGTGACGCCCAGGTGCCGGTGCAGCGTGCCGAACTCGGTGCCGTCAGCCTGGTGTACCAGAGCGTCGGTGCGCCACGCGACCCGGCCTTGCTGCTGGTCATGGGCTTGGGc                              <  6:83256/141‑1 (MQ=255)                                                                                                                       aGCGCACCGGCGAGTTTCGC‑CGAACAGCGCTGTGACGCCCAGGTGCCGGTGCAGCGTGCCGAACTCGGTGCCGTCAGCCTGGTGTACCAGAGCGTCGGTGCGCCACGCGACCCGGCCTTGCTGCTGGTCATGGGCTTGGGc                              >  5:83256/1‑141 (MQ=255)                                                                                                                                  gAGTTTCGC‑CGAACAGCGCTGTGACGCCCAGGTGCCGGTGCAGCGTGCCGAACTCGGTGCCGTCAGCCTGGTGTACCAGAGCGTCGGTGCGCCACGCGACCCGGCCTTGCTGCTGGTCATGGGCTTGGGCGGACAGCTGATTCATTGGc           <  5:58005/149‑1 (MQ=255)                                                                                                                                  gAGTTTCGC‑CGAACAGCGCTGTGACGCCCAGGTGCCGGTGCAGCGTGCCGAACTCGGTGCCGTCAGCCTGGTGTACCAGAGCGTCGGTGCGCCACGCGACCCGGCCTTGCTGCTGGTCATGGGCTTGGGCGGACAGCTGATTCATTGGc           >  6:152351/1‑149 (MQ=255)                                                                                                                                         gC‑CGAACAGCGCTGTGACGCCCAGGTGCCGGTGCAGCGTGCCGAACTCGGTGCCGTCAGCCTGGTGTACCAGAGCGTCGGTGCGCCACGCGACCCGGCCTTGCTGCTGGTCATGGGCTTGGGCGGACAGCTGATTCATTGGCCAgacga    >  8:24935/1‑149 (MQ=255)                                                                                                                                            cGAACAGCGCTGTGACGCCCAGGTGCCGGTGCAGCGTGCCGAACTCGGTGCCGTCAGCCTGGTGTACCAGAGCGTCGGTGCGCCACGCGACCCGGCCTTGCTGCTGGTCATGGGCTTGGGCGGACAGCTGATTCATTGGCCAGacgacg  >  5:161162/1‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                TCACCGAACTGTGGCAGCGCGCCCGAACAGAATTCATCAGACTCGCGCTCTACTGGGGATCTGCATTCTGGTGTTTCTTTCATGCGGGCTTTTTGGCTTTTTCTTTTCTTTC‑TGTTCAGCGCACCGGCGAGTTTCGC‑CGAACAGCGCTGTGACGCCCAGGTGCCGGTGCAGCGTGCCGAACTCGGTGCCGTCAGCCTGGTGTACCAGAGCGTCGGTGCGCCACGCGACCCGGCCTTGCTGCTGGTCATGGGCTTGGGCGGACAGCTGATTCATTGGCCAGACGACG  >  NC_002947/1218524‑1218809

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.