New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1599905 =	49 (1.160)	5 (0.120)	5/246	NT	10.4%	coding (1279/2292 nt)	bglX	beta‑D‑glucoside glucohydrolase
	?	NC_002947	1599952 =	39 (0.970)					coding (1232/2292 nt)	bglX	beta‑D‑glucoside glucohydrolase

GTGACGTTGGAGCCTTTGGCGTAGACCAGCTTGGCCTTGCCTTCCACGGCGCGGCGCAAGCCTTCGCGCACGGTCACCGAGTGGACGGGTTTACCGTCGGCGGCCCAGCTGCCCATCATGTCGATCGGAGCATCGGCCAGCGGGCCGACCAAGGCAATGGTGCCGGCCTTTTTCAGCGGCAGGGTCTGGTTGCGGTTTTCCAGCAGCACCAGGCTGCGGCGTGCCACGTCGCGCGCAGCTTCGCGGTGCAGGCGGTCGTTGCCGTAGTAGTCCTTCAGATCGGTTTCGGCCTTG  >  NC_002947/1599805‑1600098                                                                                                                                                    |                                                                                                                                                   accgcgaagctgcgcgcgacgtggcacgccgcagcctggtgctgctggaaaaccgcaaccagaccctgccgctgaaaaaggccggcaccattgccttggtCGGCCCAGCTGCCCATCATGTCGATCGGAGCATCGGCCAGCGGGCCGAc                                                                                                                                                   >  5:243200‑M1/101‑149 (MQ=255)    aCGTTGGAGCCTTTGGCGTAGACCAGCTTGGCCTTGCCTTCCACGGCGCGGCGCAAGCCTTCGCGCACGGTCACCGAGTGGACGGGTTTACCGTCGGCGGCCCAGCTGCCCATCATGTCGATCGGAGCATCGGCCAGCGGGCCGACCaa                                                                                                                                                <  5:43676/149‑1 (MQ=255)           aGCCTTTGGCGTAGACCAGCTTGGCCTTGCCTTCCACGGCGCGGCGCAAGCCTTCGCGCACGGTCACCGAGTGGACGGGTTTACCGTAGGCGGCCCAGCTGCCCATCATGTCGATCGGAGCATCGGCCAGCGGGCCGACCAAGGCAATg                                                                                                                                         <  5:49581/149‑1 (MQ=255)            gcgcgcgacgtggcacgccgcagcctggtgctgctggaaaaccgcaaccagaccctgccgctgaaaaaggccggcaccattgccttggtCGGCCCAGCTGCCCATCATGTCGATCGGAGCATCGGCCAGCGGGCCGAcc                                                                                                                                                  <  2:243956‑M1/50‑1 (MQ=255)            gcgcgcgacgtggcacgccgcagcctggtgctgctggaaaaccgcaaccagaccctgccgctgaaaaaggccggcaccattgccttggtCGGCCCAGCTGCCCATCATGTCGATCGGAGCATCGGCCAGCGGGCCGAcc                                                                                                                                                  >  1:243956‑M1/90‑139 (MQ=255)            gCCTTTGGCGTAGACCAGCTTGGCCTTGCCTTCCACGGCGCGGCGCAAGCCTTCGCGCACGGTCACCGAGTGGACGGGTTTACCGTCGGCGGCCCAGCTGCCCATCATGTCGATCGGAGCATCGGCCAGCGGGCCGACCAAGGCAATgg                                                                                                                                        >  3:164065/1‑149 (MQ=255)                  ggCGTAGACCAGCTTGGCCTTGCCTTCCACGGCGCGGCGCAAGCCTTCGCGCACGGTCACCGAGTGGACGGGTTTACCGTCGGCGGCCCAGCTGCCCATCATGTCGATCGGAGCATCGGCCAGCGGGCCGACCAAGGCAATGGTGCCg                                                                                                                                   <  4:164065/148‑1 (MQ=255)                           cAGCTTGGCCTTGCCTTCCACGGCGCGGCGCAAGCCTTCGCGCACGGTCACCGAGTGGACGGGTTTACCGTCGGCGGCCCAGCTGCCCATCATGTCGATCGGAGCATCGGCCAGCGGGCCGACCAAGGCAATGGTGcc                                                                                                                                    <  3:34450/138‑1 (MQ=255)                           cAGCTTGGCCTTGCCTTCCACGGCGCGGCGCAAGCCTTCGCGCACGGTCACCGAGTGGACGGGTTTACCGTCGGCGGCCCAGCTGCCCATCATGTCGATCGGAGCATCGGCCAGCGGGCCGACCAAGGCAATGGTGcc                                                                                                                                    >  4:34450/1‑138 (MQ=255)                           cAGCTTGGCCTTGCCTTCCACGGCGCGGCGCAAGCCTTCGCGCACGGTCACCGAGTGGACGGGTTTACCGTCGGCGGCCCAGCTGCCCATCATGTCGATCGGAGCATCGGCCAGCGGGCCGACCAAGGCAATGGTGCCGGCCTTTTTCa                                                                                                                         <  5:109590/149‑1 (MQ=255)                             gCTTGGCCTTGCCTTCCACGGCGCGGCGCAAGCCTTCGCGCACGGTCACCGAGTGGACGGGTTTACCGTCGGCGGCCCAGCTGCCCATCATGTCGATCGGAGCATCGGCCAGCGGGCCGACCAAGGCAATGGTGCCGACCTTTTTCAGc                                                                                                                       <  6:224386/149‑1 (MQ=255)                                   ccttgccttCCACGGCGCGGCGCAAGCCTTCGCGCACGGTCACCGAGTGGACGGGTTTACCGTCGGCGGCCCAGCTGCCCATCATGTCGATCGGAGCATCGGCCAGCGGGCCGACCAAGGCAATGGTGCCGGCCTTTTTCAGCGGCAgg                                                                                                                 >  8:52455/1‑149 (MQ=255)                                   ccttgccttCCACGGCGCGGCGCAAGCCTTCGAGCACGGTCACCGACTCGACCGTAATACAGACGGCGTCCCACCAGCCCGTCATTTCGATCGGAAAATCTGGCAGACGGCAGACAAACTCAAAGCTGCCGGCATATTTAGGCGCCAgg                                                                                                                 >  6:205000/1‑149 (MQ=255)                                          ttCCACGGCGCGGCGCAAGCCTTCGCGCACGGTCACCGAGTGGACGGGTTTACCGTCGGCGGCCCAGCTGCCCATCATGTCGATCGGAGCATCGGCCAGCGGGCCGACCAAGGCAATGGTGCCGGCCttttt                                                                                                                           <  1:72590/132‑1 (MQ=255)                                              aCGGCGCGGCGCAAGCCTTCGCGCACGGTCACCGAGTGGACGGGTGTACCGTCGGCGGCCCAGCTGCCCATCATGTCGATCGGAGCATCGGCCAGCGGGCCGACCAAGGCAATGGTGCCGGCCTTTTTCAGCGGCAGGGTCTGGTTGCg                                                                                                      <  8:55443/149‑1 (MQ=255)                                                      gcgcAAGCCTTCGCGCACGGTCACCGAGTGGACGGGTTTACCGTCGGCGGCCCAGCTGCCCATCATGTCGATCGGAGCATCGGCCAGCGGGCCGACCAAGGCAATGGTGCCGGCCTTTTTCAGCGGCAGGGTCTGGTTGCGGTTTTCca                                                                                              >  3:50438/1‑149 (MQ=255)                                                        gcAAGCCTTCGCGCACGGTCACCGAGTGGACGGGTTTACCGTCGGCGGCCCAGCTGCCCATCATGTCGATCGGAGCATCGGCCAGCGGGCCGACCAAGGCAATGGTGCCGGCCTTTTTCAGCGGCAGGGTCTGGTTGCGGTTTTCcag                                                                                             >  3:94767/1‑148 (MQ=255)                                                          aacccTTCGCGCACGGTCACCGAGTGGACGGGTTTACCGTCGGCGGCCCAGCTGGCCAAAATGTCGATAGGCGCAACGGCCACCCGGCCGACCAAGGGAATGGTGGCGGCCATTTTACGCGGCCCGGGCTGGTGGCCGTTTTCcagcag                                                                                          >  4:16193/4‑149 (MQ=255)                                                              cTTCGCGCACGGTCACCGAGTGGACGGGTTTACCGTCGGCGGCCCAGCTGCCCATCATGTCGATCGGAGCATCGGCCAGCGGGCCGACCAAGGCAATGGTGCCGGCCTTTTTCAGCGGCAGGGTCTGGTTGCGGTTTTCcag                                                                                             >  5:58860/1‑142 (MQ=255)                                                              cTTCGCGCACGGTCACCGAGTGGACGGGTTTACCGTCGGCGGCCCAGCTGCCCATCATGTCGATCGGAGCATCGGCCAGCGGGCCGACCAAGGCAATGGTGCCGGCCTTTTTCAGCGGCAGGGTCTGGTTGCGGTTTTCcag                                                                                             <  6:58860/142‑1 (MQ=255)                                                               ttCGCGCACGGTCACCGAGTGGACGGTTTTACCGTCGGCGGCCCAGCTGCCCATCATGTCGATCGGAGCATCGGCCAGCGGGCCGACCAAGGCAATGGTGCCGGCCTTTTTCAGCGGCAGGGTCTGGTTGCGGTTTTCCAGCAGCAc                                                                                       <  7:111263/147‑1 (MQ=255)                                                                   cgcACGGTCACCGAGTGGACGGGTTTACCGTCGGCGGCCCAGCTGCCCATCATGTCGATCGGAGCATCGGCCAGCGGGCCGACCAAGGCAATGGTGCCGGCCTTTTTCAGCGGCAGGGTCTGGTTGCGGTTTTCCAGCAGCACCAgg                                                                                   >  6:143446/1‑147 (MQ=255)                                                                   cgcACGGTCACCGAGTGGACGGGTTTACCGTCGGCGGCCCAGCTGCCCATCATGTCGATCGGAGCATCGGCCAGCGGGCCGACCAAGGCAATGGTGCCGGCCTTTTTCAGCGGCAGGGTCTGGTTGCGGTTTTCCAGCAGCACCAgg                                                                                   <  5:143446/147‑1 (MQ=255)                                                                          tCACCGAGTGGACGGGTTTACCGTCGGCGGCCCAGCTGCCCATCATGTCGATCGGAGCATCGGCCAGCGGGCCGACCAAGGCAATGGTGCCGGCCTTTTTCAGCGGCAGGGTCTGGTTGCGGTTTTCCAGCAGCACCAGGCTGCGGCGt                                                                          <  5:117372/149‑1 (MQ=255)                                                                           cACCGAGTGGACGGGTTTACCGTCGGCGGCCCAGCTGCCCATCATGTCGATCGGAGCATCGGCCAGCGGGCCGACCAAGGCAATGGTGCCGGCCTTTTTCAGCGGCAGGGTCTGGTTGCGGTTTTCCAGCAGCACCAGGCTGCGGCGTg                                                                         <  7:52455/149‑1 (MQ=255)                                                                             ccGAGTGGACGGGTTTACCGTCGGCGGCCCAGCTGCCCATCATGTCGATCGGAGCATCGGCCAGCGGGCCGACCAAGGCAATGGTGCCGGCCTTTTTCAGCGGCAGGGTCTgg                                                                                                           >  5:97303/1‑113 (MQ=255)                                                                             ccGAGTGGACGGGTTTACCGTCGGCGGCCCAGCTGCCCATCATGTCGATCGGAGCATCGGCCAGCGGGCCGACCAAGGCAATGGTGCCGGCCTTTTTCAGCGGCAGGGTCTgg                                                                                                           <  6:97303/113‑1 (MQ=255)                                                                             ccGAGTGGACGGGTTTACCGTCGGCGGCCCAGCTGCCCATCATGTCGATCGGAGCATCGGCCAGCGGGCCGACCAAGGCAATGGTGCCGGCCTTTTTCAGCGGCAGGGTCTGGTTGCGGTTTTCCAGCAGCACCAGGCTGCGGCGTGcc                                                                       >  6:98517/1‑149 (MQ=255)                                                                                    gACGGGTTTACCGTCGGCGGCCCAGCTGCCCATCATGTCGATCGGAGCATCGGCCAGCGGGCCGACCAAGGCAATGGTGCCGGCCTTTTTCAGCGGCAGGGTCTGGTTGCGGTTTTCCAGCAGCACCAGGCTGCGGCGTGCCACGTc                                                                  <  4:118741/147‑1 (MQ=255)                                                                                    gACGGGTTTACCGTCGGCGGCCCAGCTGCCCATCATGTCGATCGGAGCATCGGCCAGCGGGCCGACCAAGGCAATGGTGCCGGCCTTTTTCAGCGGCAGGGTCTGGTTGCGGTTTTCCAGCAGCACCAGGCTGCGGCGTGCCACGTc                                                                  >  3:118741/1‑147 (MQ=255)                                                                                        ggTTTACCGTCGGCGGCCCAGCTGCCCATCATGTCGATCGGAGCATCGGCCAGCGGGCCGACCAAGGCAATGGTGCCGGCCTTTTTCAGCGGCAGGGTCTGGTTGCGGTTTTCCAGCAGCACCAGGCTGCGGCGTGCCACGTCgcgcgc                                                            <  4:50438/149‑1 (MQ=255)                                                                                         gTTTACCGTCGGCGGCCCAGCTGCCCATCATGTCGATCGGAGCATCGGCCAGCGGGCCGACCAAGGCAATGGTGCCGGCCTTTTTCAGCGGCAGGGTCTGGTTGCGGTTTTCCAGCAGCACCAGGCTGCGGCGTGCCACGTCGCGCGCa                                                           <  5:98517/149‑1 (MQ=255)                                                                                              ccGTCGGCGGCCCAGCTGCCCATCATGTCGATCGGAGCATCGGCCAGCGGGCCGACCAAGGCAATGGTGCCGGCCTTTTTCAGCGGCAGGGGCTGGTTGGGGTTTTACAGCAGCCCCAGGCTGCGGCGTGCCACGTCGCGCGCAGCTTc                                                      >  6:70245/1‑149 (MQ=255)                                                                                              ccGTCGGCGGCCCAGCTGCCCATCATGTCGATCGGAGCATCGGCCAGCGGGCCGACCAAGGCAATGATGCCGGCCTTTTTCAGCGGCAGGGTCTGGTTGCGGTTTTCCAGCAGCACCAGGCTGCGGCGTGCCACGTCGCGCGCAGCTTc                                                      >  2:36511/1‑149 (MQ=255)                                                                                               cGTCGGCGGCCCAGCTGCCCATCATGTCGATCGGAGCATCGGCCAGCGGGCCGACCAAGGCCATGGTGCCGGCCTTTTTCAGCGGCAGGGTCTGGTTGCGGTTTTCCAGCAGCACCAGGCTGCGGCGTGCCACGTCGCGCGCAGCTTcg                                                     >  3:202385/1‑149 (MQ=255)                                                                                                  ggtcggcccgctggccgatgctccgatcgacatgatgggcagctgggccgACCAAGGCAATGGTGCCGGCCTTTTTCAGCGGCAGGGTCTGGTTGCGGTTTTCCAGCAGCACCAGGCTGCGGCGTGCCACGTCgcgcgc                                                            <  2:243956‑M2/89‑1 (MQ=255)                                                                                                  ggtcggcccgctggccgatgctccgatcgacatgatgggcagctgggccgACCAAGGCAATGGTGCCGGCCTTTTTCAGCGGCAGGGTCTGGTTGCGGTTTTCCAGCAGCACCAGGCTGCGGCGTGCCACGTCgcgcgc                                                            >  1:243956‑M2/51‑139 (MQ=255)                                                                                                   gtcggcccgctggccgatgctccgatcgacatgatgggcagctgggccgACCAAGGCAATGGTGCCGGCCTTTTTCAGCGGCAGGGTCTGGTTGCGGTTTTCCAGCAGCACCAGGCTGCGGCGTGCCACGTCGCGCGCAGCTTCGCGGt                                                 >  5:243200‑M2/50‑149 (MQ=255)                                                                                                        cccgctggccgatgctccgatcgacatgatgggcagctgggccgACCAAGGCAATGGTGCCGGCCTTTTTCAGCGGCAGGGTCTGGTTGCGGTTTTCCAGCAGCACCAGGCTGCGGCGTGCCAc                                                                     >  6:170482‑M2/45‑124 (MQ=255)                                                                                                        cccgctggccgatgctccgatcgacatgatgggcagctgggccgACCAAGGCAATGGTGCCGGCCTTTTTCAGCGGCAGGGTCTGGTTGCGGTTTTCCAGCAGCACCAGGCTGCGGCGTGCCAc                                                                     <  5:170482‑M2/80‑1 (MQ=255)                                                                                                        CCCAGCTGCCCATCATGTCGATCGGAGCATCGGCCAGCGGGCCGACCAAGGCAATGGTGCCGGCCTTTTTCAGCGGCAGGGTCTGGTTGCGGTTTTCCAGCAGCACCAGGCTGCGGCGTGCCACGTCGCGCGCAGCTTCGCGGTGCAgg                                            >  5:70245‑M1/1‑149 (MQ=255)                                                                                                            gCTGCCCATCATGTCGATCGGAGCATCGGCCAGCGGGCCGACCAAGGCAATGGTGCCGGCCTTTTTCAGCGGCAGGGTCTGGTTGCGGTTTTCCAGCAGCACCAGGCTGCGGCGTGCCACGTCGCGCGCAGCTTCGCGGTGCAGGCGGt                                        >  6:112688/1‑149 (MQ=255)                                                                                                                  catcatGTCGATCGGAGCATCGGCCAGCGGGCCGACCAAGGCAATGGTGCCGGCCTTTTTCAGCGGCAGGGTCTGGTTGCGGTTTTCCAGCAGCACCAgg                                                                                   <  7:86086/100‑1 (MQ=255)                                                                                                                  catcatGTCGATCGGAGCATCGGCCAGCGGGCCGACCAAGGCAATGGTGCCGGCCTTTTTCAGCGGCAGGGTCTGGTTGCGGTTTTCCAGCAGCACCAgg                                                                                   >  8:86086/1‑100 (MQ=255)                                                                                                                       tGTCGATCGGAGCATCGGCCTTCGGGCCGACCAAGGCAATGGGTCCGGCCTTTTTCAGCGGCAGGGTCTGGTTGCGGTTTTCCAGCAGCACGAGGCTGCGGCGTGCCACGTCGCGCGCAGCTTCGCGGTGCAGGCGGTCGTTGCCgtag                             <  3:16193/149‑1 (MQ=255)                                                                                                                         tCGATCGGAGCATCGGCCAGCGGGCCGACCAAGGCAATGGTGCCGGCCTTTTTCAGCGGCAGGGTCTGGTTGCGGTTTTCCAGCAGCACCAGGCTGCGGCGTGCCACGTCGCGCGCAGCTTCGCGGTGCAGGCGGTCGTTGCCgtagta                           >  8:129956/1‑149 (MQ=255)                                                                                                                               ggAGCATCGGCCAGCGGGCCGACCAAGGCAATGGTGCCGGCCTTTTTCAGCGGCAGGGTCTGGTTGCGGTTTTCCAGCAGCACCAGGCTGCGGCGTGCCACGTCGCGCGCAGCTTCGCGGTGCAGGCGGTCGTTGCCGTAGTAGTCCtt                     <  7:129956/149‑1 (MQ=255)                                                                                                                                gAGCATCGGCCAGCGGGCCGACCAAGGCAATGGTGCCGGCCTTTTTCAGCGGCAGGGTCTGGTTGCGGTTTTCCAGCAGCACCAGGCTGCGGCGTGCCACGTCGCGCGCAGCTTCGCGGTGCAGGCGGTCGTTGCCGTAGTAGTCCTTc                    <  4:94767/149‑1 (MQ=255)                                                                                                                                  gCATCGGCCAGCGGGCCGACCAAGGCAATGGTGCCGGCCTTTTTCAGCGGCAGGGTCTGGTTGCGGTTTTCCAGCAGCACCAGGCTGCGGCGTGCCACGTCGCGCGCAGCTTCGCGGTGCAGGCGGTCGTTGCCGTAGTAGTCCtt                     >  4:57461/1‑146 (MQ=255)                                                                                                                                                  cgACCAAGGCAATGGTGCCGGCCTTTTTCAGCGGCAGGGTCTGGTTGCGGTTTTCCAGCAGCACCAGGCTGCGGCGTGCCACGTCGCGCGCAGCTTCGCGGTGCAGGCGGTCGTTGCCGTAGTAGTCCTTCAGATCGGTTTCGGCCTTg  <  7:49513‑M2/147‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                   GTGACGTTGGAGCCTTTGGCGTAGACCAGCTTGGCCTTGCCTTCCACGGCGCGGCGCAAGCCTTCGCGCACGGTCACCGAGTGGACGGGTTTACCGTCGGCGGCCCAGCTGCCCATCATGTCGATCGGAGCATCGGCCAGCGGGCCGACCAAGGCAATGGTGCCGGCCTTTTTCAGCGGCAGGGTCTGGTTGCGGTTTTCCAGCAGCACCAGGCTGCGGCGTGCCACGTCGCGCGCAGCTTCGCGGTGCAGGCGGTCGTTGCCGTAGTAGTCCTTCAGATCGGTTTCGGCCTTG  >  NC_002947/1599805‑1600098

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.