New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1923366 =	35 (0.830)	4 (0.100)	3/246	NT	9.8%	coding (674/795 nt)	PP_1723	2‑aminoethylphosphonate ABC transporter permease
	?	NC_002947	1923403 =	40 (0.990)					coding (637/795 nt)	PP_1723	2‑aminoethylphosphonate ABC transporter permease

CCTTGTTCAGGCGGTTGGCGACCCAGGTCAGTACCAGCACGAAGGCGAAGTAGGAGATGACCAGCGCGCTGTTGAAGTGGCCGCTGCTGTTGCGCATGTTGTTCAGGTACACCTGCAGGGTCTCGTAGCGGGTGCCGACCAGCAGGTTGGCAAACACGAATTCGCCGAACAGGAACGAGAACGACAGCAGCACTGCCACCATCAGGCCCTGGCGCAGGTTCGGCAGCACCACCAGCAGTGCGGCCTGCCAGGTGCTGGCGCCGAGCAGCTGCGCGGCGTCCATCA  >  NC_002947/1923256‑1923540                                                                                                                                                    |                                                                                                                                          cagcacctggcaggccgcactgctggtggtgctgccgaacctgcgccagggcctgatggtggcagtgctgctgtcgttctcgttcctgttcggcgaattcgtgtttgccaACCTGCAGGGTCTCGTAGCGGGTGCCGACCAGCAGGTTg                                                                                                                                          >  8:230701‑M1/111‑149 (MQ=255)  cTTGTTCAGGCGGTTGGCGACCCAGGTCAGTACCAGCACGAAGGCGAAGTAGGAGATGACCAGCGCGCTGTTGAAGTGGCCGCTGCTGTTGCGCATGTTGTTCAGGTACACCTGCAGGGTCTCGTAGCGGGTGCCGACCAGCAGGTTgg                                                                                                                                         <  4:6810/149‑1 (MQ=255)  agcacctggcaggccgcactgctggtggtgctgccgaacctgcgccagggcctgatggtggcagtgctgctgtcgttctcgttcctgttcggcgaattcgtgtttgccaACCTGCAGGGTCTCGTAGCGGGTGCCGACCAGCAGGTTgg                                                                                                                                         >  2:174898‑M1/110‑149 (MQ=255)         aGGCGGTTGGCGACCCAGGTCAGTACCAGCACGAAGGCGAAGTAGGAGATGACCAGCGCGCTGTTGAAGTGGCCGCTGCTGTTGCGCATGTTGTTCAGGTACACCTGCAGGGTCTCGTAGCGGGTGCCGACCAGCAGGTTGGCAAacac                                                                                                                                  <  2:233383/149‑1 (MQ=255)         aGGCGGTTGGCGACCCAGGTCAGTACCAGCACGAAGGCGAAGTAGGAGATGACCAGCGCGCTGTTGAAGTGGCCGCTGCTGTTGCGCATGTTGTTCAGGTACACCTGCAGGGTCTCGTAGCGGGTGCCGACCAGCAGGTTGGCAAacac                                                                                                                                  >  7:115804/1‑149 (MQ=255)         aGGCGGTTGGCGACCCAGGTCAGTACCAGCACGAAGGCGAAGTAGGAGATGACCAGCGCGCTGTTGAAGTGGCCGCTGCTGTTGCGCATGTTGTTCAGGTACACCTGCAGGGTCTCGTAGCGGGTGCCGACCAGCAGGTTGGCAAaca                                                                                                                                   <  8:151720/148‑1 (MQ=255)           gCGGTTGGCGACCCAGGTCAGTACCAGCACGAAGGCGAAGTAGGAGATGACCAGCGCGCTGTTGAAGTGGCCGCTGCTGTTGCGCATGTTGTTCAGGTACACCTGCAGGGTCTCGTAGCGGGTGCCGACCAGCAGGTTGGCAAac                                                                                                                                    <  8:95685/145‑1 (MQ=255)           gCGGTTGGCGACCCAGGTCAGTACCAGCACGAAGGCGAAGTAGGAGATGACCAGCGCGCTGTTGAAGTGGCCGCTGCTGTTGCGCATGTTGTTCAGGTACACCTGCAGGGTCTCGTAGCGGGTGCCGACCAGCAGGTTGGCAAac                                                                                                                                    >  7:95685/1‑145 (MQ=255)           gCGGTTGGCGACCCAGGTCAGTACCAGCACGAAGGCGAAGTAGGAGATGACCAGCGCGCTGTTGAAGTGGCCGCTGCTGTTGCGCATGTTGTTCAGGTACACCTGCAGGGTCTCGTAGCGGGTGCCGACCAGCAGGTTGGCAAACACGa                                                                                                                                <  6:195166/149‑1 (MQ=255)                         aGGTCAGTACCAGCACGAAGGCGAAGTAGGAGATGACCAGCGCGCTGTTGAAGTGGCCGCTGCTGTTGCGCATGTTGTTCAGGTACACCTGCAGGGTCTCGTAGCGGGTGCCGACCAGCAGGTTGGCAAACACGAATTCGCCGAACAg                                                                                                                   >  4:91477/1‑148 (MQ=255)                                 tgccgaacctgcgccagggcctgatggtggcagtgctgctgtcgttctcgttcctgttcggcgaattcgtgtttgccaACCTGCAGGGTCTCGTAGCGGGTGCCGACCAGCAGGTTg                                                                                                                                          <  4:84548‑M1/39‑1 (MQ=255)                                 tgccgaacctgcgccagggcctgatggtggcagtgctgctgtcgttctcgttcctgttcggcgaattcgtgtttgccaACCTGCAGGGTCTCGTAGCGGGTGCCGACCAGCAGGTTg                                                                                                                                          >  3:84548‑M1/79‑117 (MQ=255)                                  ccAGCACGAAGGCGAAGTAGGAGATGACCAGCGCGCTGTTGAAGTGGCCGCTGCTGTTGCGCATGTTGTTCAGGTACACCTGCAGGGTCTCGTAGCGGGTGCCGACCAGCAGGTTGGCAAACACGAATTCGCCGAACAGgaacgagaa                                                                                                          <  8:115804/148‑1 (MQ=255)                                                aaGTAGGAGATGACCAGCGCGCTGTTGAAGTGGCCGCTGCTGTTGCGCATGTTGTTCAGGTACACCTGCAGGGTCTCGTAGCGGGTGCCGACCAGCAGGTTGGCAAACACGAATTCGcc                                                                                                                         >  3:70710/1‑119 (MQ=255)                                                aaGTAGGAGATGACCAGCGCGCTGTTGAAGTGGCCGCTGCTGTTGCGCATGTTGTTCAGGTACACCTGCAGGGTCTCGTAGCGGGTGCCGACCAGCAGGTTGGCAAACACGAATTCGcc                                                                                                                         <  4:70710/119‑1 (MQ=255)                                                           gACCAGCGCGCTGTTGAAGTGGCCGCTGCTGTTGCGCATGTTGTTCAGGTACACCTGCAGGGTCTCGTAGCGGGTGCCGACCAGCAGGTTGGCAAACACGAATTCGCCGAACAGGAACGAGAACGACAGCAGCACTGCCACCATCAGGc                                                                                >  7:59358/1‑149 (MQ=255)                                                               aGCGCGCTGTTGAAGTGGCCGCTGCTGTTGCGCATGTTGTTCAGGTACACCTGCAGGGTCTCGTAGCGGGTGCCGACCAGCAGGTTGGCAAACACGAATTCGCCGAACAGGAACGAGAACGACAGCAGCACTGCCACCATCAGGCCCTg                                                                            >  8:121674/1‑149 (MQ=255)                                                                        ttGAAGTGGCCGCTGCTGTTGCGCATGTTGTTCAGGTACACCTGCAGGGTCTCGTAGCGGGTGCCGACCAGCAGGTTGGCAAACACGAATTCGCCGAACAGGAACGAGAACGACAGCAGCACTGCCACCATCAGGCCCTGGCGCAGGtt                                                                   >  3:89479/1‑149 (MQ=255)                                                                        ttGAAGTGGCCGCTGCTGTTGCGCATGTTGTTCAGGTACACCTGCAGGGTCTCGTAGCGGGTGCCGACCAGCAGGTTGGCAAACACGAATTCGCCGAACAGGAACGAGAACGACAGCAGCACTGCCACCATCAGGCCCTGGCGCAGGtt                                                                   >  6:150585/1‑149 (MQ=255)                                                                        ttGAAGTGGCCGCTGCTGTTGCGCATGTTGTTCAGGTACACCTGCAGGGTCTCGTAGCGGGTGCCGACCAGCAGGTTGGCAAACACGAATTCGCCGAACAGGAACGAGAACGACAGCAGCACTGCCACCAACAGGCCCTGGCGCAGGtt                                                                   >  6:176746/1‑149 (MQ=255)                                                                             gTGGCCGCTGCTGTTGCGCATGTTGTTCAGGTACACCTGCAGGGTCTCGTAGCGGGTGCCGACCAGCAGGTTGGCAAACACGAATTCGCCGAACAGGAACGAGAACGACAGCAGCACTGCCACCATCAGGCCCTGGCGCAGGTTCgg                                                                >  4:199294/1‑147 (MQ=255)                                                                                gCCGCTGCTGTTGCGCATGTTGTTCAGGTACACCTGCAGGGTCTCGTAGCGGGTGCCGACCAGCAGGTTGGCAAACACGAATTCGCCGAACAGGAACGAGAACGACAGCAGCACTGCCACCATCAGGCCCTGGCGCAGGTTCGgcaggc                                                           >  6:145068/1‑147 (MQ=255)                                                                                gCCGCTGCTGTTGCGCATGTTGTTCAGGTACACCTGCAGGGTCTCGTAGCGGGTGCCGACCAGCAGGTTGGCAAACACGAATTCGCCGAACAGGAACGAGAACGACAGCAGCACTGCCACCATCAGGCCCTGGCGCAGGTTCGgcagca                                                           >  4:192421/1‑149 (MQ=255)                                                                                 ccGCTGCTGTTGCGCATGTTGTTCAGGTACACCTGCAGGGTCTCGTAGCGGGTGCCGACCAGCAGGTTGGCAAACACGAATTCGCCGAACAGGAACGAGAACGACAGCAGCACTGCCACCATCAGGc                                                                                <  7:16498/127‑1 (MQ=255)                                                                                 ccGCTGCTGTTGCGCATGTTGTTCAGGTACACCTGCAGGGTCTCGTAGCGGGTGCCGACCAGCAGGTTGGCAAACACGAATTCGCCGAACAGGAACGAGAACGACAGCAGCACTGCCACCATCAGGc                                                                                >  8:16498/1‑127 (MQ=255)                                                                                        tgTTGCGCATGTTGTTCAGGTACACCTGCAGGGTCTCGTAGCGGGTGCCGACCAGCAGGTTGGCAAACACGAATTCGCCGAACAGGAACGAGAACGACAGCAGCACTGCCACCATCAGGCCCTGGCGCAGGTTCGGCAGCACCACcag                                                    >  8:16217/1‑148 (MQ=255)                                                                                        tgTTGCGCATGTTGTTCAGGTACACCTGCAGGGTCTCGTAGCGGGTGCCGACCAGCAGGTTGGCAAACACGAATTCGCCGAACAGGAACGAGAACGACAGCAGCACTGACACCATCAGGCCCTGGCGCAGGTTCGGCAGCACCACcag                                                    >  7:172218/1‑148 (MQ=255)                                                                                                    tgttCAGGTACACCTGCAGGGTCTCGTAGCGGGTGCCGACCAGCAGGTTGGCAAACACGAATTCGCCGAACAGGAACGAGAACGACAGCAGCACTGCCACCATCAGGCCCTGGCGCAGGTTCGGCAGCACCACCAGCAGTGCGGCCTg                                        <  4:89479/148‑1 (MQ=255)                                                                                                    tgttCAGGTACACCTGCAGGGTCTCGTAGCGGGTGCCGACCAGCAGGTTGGCAAACACGAATTCGCCAAACAGGAACGAGAACGACAGCAGCACTGCCACCATCAGGCCCTGGCGCAGGTTCGGCAGCACCACCAGCAGTGCGGCCTGc                                       >  3:86576/1‑149 (MQ=255)                                                                                                         aGGTACACCTGCAGGGTCTCGTAGCGGGTGCCGACCAGCAGGTTGGCAAACACGAATTCGCCGAACAGGAACGAGAACGACAGCAGCACTGCCACCATCa                                                                                   >  5:136345/1‑100 (MQ=255)                                                                                                         aGGTACACCTGCAGGGTCTCGTAGCGGGTGCCGACCAGCAGGTTGGCAAACACGAATTCGCCGAACAGGAACGAGAACGACAGCAGCACTGCCACCATCa                                                                                   <  6:136345/100‑1 (MQ=255)                                                                                                           gTACACCTGCAGGGTCTCGTAGCGGGTGCCGACCAGCAGGTTGGCAAACACGAATTc                                                                                                                            >  1:11882/1‑57 (MQ=255)                                                                                                           gTACACCTGCAGGGTCTCGTAGCGGGTGCCGACCAGCAGGTTGGCAAACACGAATTc                                                                                                                            <  2:11882/57‑1 (MQ=255)                                                                                                           gTACACCTGCAGGGTCTCGTAGCGGGTGCCGACCAGCAGGTTGGCAAACACGAATTCGCCGAACAGGAACGAGAACGACAGCAGCACTGCCACCATCAGGCCCTGGCGCAGGTTCGGCAGCACCACCAGCAGTGCGGCCTGCCAGGTGc                                >  6:142471/1‑149 (MQ=255)                                                                                                            ccaacctgctggtcggcacccgctacgagaccctgcaggtTGGCAAACACGAATTCGCCGAACAGGAACGAGAACGACAGCAGCACTGCCACCATCAGGCCCTGGCGCAGGTTCGGCAGCACCACCAGCAGTGCGGCCTGCCAGGTGCt                               >  2:174898‑M2/41‑149 (MQ=255)                                                                                                             caacctgctggtcggcacccgctacgagaccctgcaggtTGGCAAACACGAATTCGCCGAACAGGAACGAGAACGACAGCAGCACTGCCACCATCAGGCCCTGGCGCAGGTTCGgca                                                              <  4:84548‑M2/78‑1 (MQ=255)                                                                                                             caacctgctggtcggcacccgctacgagaccctgcaggtTGGCAAACACGAATTCGCCGAACAGGAACGAGAACGACAGCAGCACTGCCACCATCAGGCCCTGGCGCAGGTTCGgca                                                              >  3:84548‑M2/40‑117 (MQ=255)                                                                                                             caacctgctggtcggcacccgctacgagaccctgcaggtTGGCAAACACGAATTCGCCGAACAGGAACGAGAACGACAGCAGCACTGCCACCATCAGGCCCTGGCGCAGGTTCGGCAGCACCACCAGCAGTGCGGCCTGCCAGGTGCTg                              >  8:230701‑M2/40‑149 (MQ=255)                                                                                                              cacCTGCAGGGTCTCGTAGCGGGTGCCGACCAGCAGGTTGGCAAACACGAATTCGCCGAACAGGAACGAGAACGACAGCAGCACTGCCACCATCAGGCCCTGGCGCAGGTTCGGCAGCACCACCAGCAGTGCGGCCTGCCAGGTGCTgg                             >  3:125833/1‑149 (MQ=255)                                                                                                               ACCTGCAGGGTCTCGTAGCGGGTGCCGACCAGCAGGTTGGCAAACACGAATTCGCCGAACAGGAACGAGAACGACAGCAGCACTGCCACCATCAGGCCCTGGCGCAGGTTCGGCAGCACCACCAGCAGTGCGGCCTGCCAGGTGCTGgc                            <  3:257215‑M1/149‑1 (MQ=255)                                                                                                                 CTGCAGGGTCTCGTAGCGGGTGCCGACCAGCAGGTTGGCAAACACGAATTCGCCGAACAGGAACGAGAACGACAGCAGCACTGCCACCATCAGGCCCTGGCGCAGGTTCGGCAGCACCACCAGCAGTGCGGCCTGCCAGGTGCTGgcgc                          >  5:208114‑M1/1‑149 (MQ=255)                                                                                                                 CTGCAGGGTCTCGTAGCGGGTGCCGACCAGCAGGTTGGCAAACACGAATTCGCCGAACAGGAACGAGAACGACAGCAGCACTGCCACCATCAGGCCCTGGCGCAGGTTCGGCAGCACCACCAGCAGTGCGGCCTGCCAGGTGCTGgcgc                          <  6:208114‑M1/149‑1 (MQ=255)                                                                                                                    CAGGGTCTCGTAGCGGGTGCCGACCAGCAGGTTGGCAAACACGAATTCGCCGAACAGGAACGAGAACGACAGCAGCACTGCCACCATCAGGCCCTGGCGCAGGTTCGGCAGCACCACCAGCAGTGCGGCCTGCCAGGTGCTGGCGCCGa                       >  7:121674‑M1/1‑149 (MQ=255)                                                                                                                       ggTCTCGTAGCGGGTGCCGACCAGCAGGTTGGCAAACACGAATTCGCCGAACAGGAACGAGAACGACAGCAGCACTGCCACCATCAGGCCCTGGCGCAGGTTCGGCAGCACCACCAGCAGTGCGGCCTGCCAGGTGCTGGCGCCGagca                    <  5:150585/149‑1 (MQ=255)                                                                                                                         tctcGTAGCGGGTGCCGACCAGCAGGTTGGCAAACACGAATTCGCCGAACAGGAACGAGAACGACAGCAGCACTGCCACCATCAGGCCCTGGCGCAGGTTCGGCAGCACCACCAGCAGTGCGGCCTGCCAGGTGCTGGCGCCGagcagc                  >  5:190052/1‑149 (MQ=255)                                                                                                                           tcGTAGCGGGTGCCGACCAGCAGGTTGGCAAACACGAATTCGCCGAACAGGAACGAGAACGACAGCAGCACTGCCACCATCAGGCCCTGGCGCAGGt                                                                    <  1:242783/97‑1 (MQ=255)                                                                                                                           tcGTAGCGGGTGCCGACCAGCAGGTTGGCAAACACGAATTCGCCGAACAGGAACGAGAACGACAGCAGCACTGCCACCATCAGGCCCTGGCGCAGGTTCGGCAGCACCACCAGCAGTGCGGCCTGCCAGGTGCTGGCGCCGAGCAGCTg                >  5:270275/1‑149 (MQ=255)                                                                                                                             gTAGCGGGTGCCGACCAGCAGGTTGGCAAACACGAATTCGCCGAACAGGAACGAGAACGACAGCAGCACTGCCACCATCAGGCCCTGGCGCAGGTTCGGCAGCACCACCAGCAGTGCGGCCTGCCAGGTGCTGGCGCCGAGCAGCTgcg              >  8:194283/1‑149 (MQ=255)                                                                                                                              tAGCGGGTGCCGACCAGCAGGTTGGCAAACACGAATTCGCCGAACAGGAACGAGAACGACAGCAGCACTGCCACCATCAGGCCCTGGCGCAGGTTCGGCAGCACCACCAGCAGTGCGGCCTGCCAGGTGCTGGCGCCGAGCAGCTgcgc             <  4:125833/149‑1 (MQ=255)                                                                                                                               aGCGGGTGCCGACCAGCAGGTTGGCAAACACGAATTCGCCGAACAGGAACGAGAACGACAGCAGCACTGCCACCATCAGGCCCTGGCGCAGGTTCGGCAGCACCACCAGCAGTGCGGCCTGCCAGGTGCTGGCGCCGAGCAGCTGcgcg            >  4:186501/1‑149 (MQ=255)                                                                                                                                       ccGACCAGCAGGTTGGCAAACACGAATTCGCCGAACAGGAACGAGAACGACAGCAGCACTGCCACCATCAGGCCCTGGCGCAGGTTCGGCAGCACCACCAGCAGTGCGGCCTGCCAGGTGCTGGCGCCGCGCAGCTGCGCGGCGTCCag    >  2:195581/1‑148 (MQ=255)                                                                                                                                       ccGACCAGCAGGTTGGCAAACACGAATTCGCCGAACAGGAACGAGAACGACAGCAGCACTGCCACCATCAGGCCCTGGCGCAGGTTCGGCAGCACCACCAGCAGTGCGGCCTGCCAGGTGCTGGCGCCGAGCAGCTGCGCGGCGTCCAt    <  3:192421/149‑1 (MQ=255)                                                                                                                                       ccGACCAGCAGGTTGGCAAACACGAATTCGCCGAACAGGAACGAGAACGACAGCAGCACTGCCACCATCAGGCCCTGGCGCAGGTTCGGCAGCACCACCAGCAGTGCGGCCTGCCAGGTGCTGGCGCCGAGCAGCTGCGCGGCGTCCAt    <  3:91477/149‑1 (MQ=255)                                                                                                                                         gACCAGCAGGTTGGCAAACACGAATTCGCCGAACAGGAACGAGAACGACAGCAGCACTGCCACCATCAGGCCCTGGCGCAGGTTCGGCAGCACCACCAGCAGTGCGGCCTGCCAGGTGCTGGCGCCGAGCAGCTGCGCGGCGTCCATCa  <  4:257215/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                          CCTTGTTCAGGCGGTTGGCGACCCAGGTCAGTACCAGCACGAAGGCGAAGTAGGAGATGACCAGCGCGCTGTTGAAGTGGCCGCTGCTGTTGCGCATGTTGTTCAGGTACACCTGCAGGGTCTCGTAGCGGGTGCCGACCAGCAGGTTGGCAAACACGAATTCGCCGAACAGGAACGAGAACGACAGCAGCACTGCCACCATCAGGCCCTGGCGCAGGTTCGGCAGCACCACCAGCAGTGCGGCCTGCCAGGTGCTGGCGCCGAGCAGCTGCGCGGCGTCCATCA  >  NC_002947/1923256‑1923540

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.