New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2673825 =	40 (0.950)	4 (0.100)	3/244	NT	9.2%	intergenic (‑15/+7)	PP_5519/PP_2342	hypothetical protein/hypothetical protein
	?	NC_002947	2673861 =	41 (1.030)					coding (166/195 nt)	PP_2342	hypothetical protein

TCACGGATTCCGCGATAGGCGGTGTCCCGGTCTATCCTCGTCAAGTGCAGCAACATGTCGAGGCGCAGGAAGCGGTCGAGGTGTTCTGCATGTCGCATGGGCTTCTCTTATATGGCCGGTCAGGCCTTGAGCGGTTCACTGCCGGCCAGGTACAGCTGCAGGCTGGACTTGCGTGCCATGAAGAACGAGACCTTGGCGGTGATAGCTGCGGGTACAGATTCGATTCGTCTGCTCGTCCCGCCTCTCCTGGGTGCGGAGAATAATGCTGCAGTGGTACATTTCCTGATCGTCAAAAG  >  NC_002947/2673713‑2674008                                                                                                                                                     |                                                                                                                                                    ttctccgcacccaggagaggcgggacgagcagacgaatcgaatctgtacccgcagctatcaccgccaaggtctcgttcttcatggcacgcaagtccagcctgcagctgtaccTGGCCGGTCAGGCCTTGAGCGGTTCACTGCCGGCCAg                                                                                                                                                     <  8:242009‑M1/37‑1 (MQ=255) ttctccgcacccaggagaggcgggacgagcagacgaatcgaatctgtacccgcagctatcaccgccaaggtctcgttcttcatggcacgcaagtccagcctgcagctgtaccTGGCCGGTCAGGCCTTGAGCGGTTCACTGCCGGCCAg                                                                                                                                                     >  7:242009‑M1/113‑149 (MQ=255) ttctccgcacccaggagaggcgggacgagcagacgaatcgaatctgtacccgcagctatcaccgccaaggtctcgttcttcatggcacgcaagtccagcctgcagctgtaccTGGCCGGTCAGGCCTTGAGCGGTTCACTGCCGGCCAg                                                                                                                                                     >  3:63887‑M1/113‑149 (MQ=255)      cgcacccaggagaggcgggacgagcagacgaatcgaatctgtacccgcagctatcaccgccaaggtctcgttcttcatggcacgcaagtccagcctgcagctgtaccTGGCCGGTCAGGCCTTGAGCGGTTCACTGCCGGCCAGGt                                                                                                                                                   >  3:88647‑M1/108‑146 (MQ=255)        ttCCGCGATAGGCGGTGTCCCGGTCTATCCTCGTCAAGTGCAGCAACATGTCGAGGCGCAGGAAGCGGTCGAGGTGTTCTGCATGTCGCATGGGCTTCTCTTATATGGCCGGTCAGGCCTTGAGCGGTTCACTGCCGGCCAGGTACAGc                                                                                                                                              <  2:192333/149‑1 (MQ=255)           cgcgATAGGCGGTGTCCCGGTCTATCCTCGTCAAGTGCAGCAACATGTCGAGGCGCAGGAAGCGGTCGAGGTGTTCTGCATGTCGCATGGGCTTCTCTTATATGGCCGGTCAGGCCTTGAGCGGTTCACTGCCGGCCAGGTACAGCTg                                                                                                                                            >  7:123453/1‑148 (MQ=255)           cgcgATAGGCGGTGTCCCGGTCTATCCTCGTCAAGTGCAGCAACATGTCGAGGCGCAGGAAGCGGTCGAGGTGTTCTGCATGTCGCATGGGCTTCTCTTATATGGCCGGTCAGGCCTTGAGCGGTTCACTGCCGGCCAGGTACAGCTg                                                                                                                                            >  3:91085/1‑148 (MQ=255)            gcgATAGGCGGTGTCCCGGTCTATCCTCGTCAAGTGCAGCAACATGTCGAGGCGCAGGAAGCGGTCGAGGTGTTCTGCATGTCGCATGGGCTTCTCTTATATGGCCGGTCAGGCCTTGAGCGGTTCACTGCCGGCCAGGTACAGCTg                                                                                                                                            >  5:41588/1‑147 (MQ=255)                                   tCCTCGTCAAGTGCAGCAACATGTCGAGGCGCAGGAAGCGGTCGAGGTGTTCTGCATGTCGCATGGGCTTCTCTTATATGGCCGGTCAGGCCTTGAGCGGTTCACTGCCGGCCAGGTACAGCTGCAGGCTGGACTTGCGTGCCATg                                                                                                                      >  1:26472/1‑146 (MQ=255)                                     cTCGTCAAGTGCAGCAACATGTCGAGGCGCAGGAAGCGGTCGAGGTGTTCTGCATGTCGCATGGGCTTCTCTTATATGGCCGGTCAGGCCTTGAGCGGTTCACTGCCGGCCAGGTACAg                                                                                                                                               <  7:124141/119‑1 (MQ=255)                                     cTCGTCAAGTGCAGCAACATGTCGAGGCGCAGGAAGCGGTCGAGGTGTTCTGCATGTCGCATGGGCTTCTCTTATATGGCCGGTCAGGCCTTGAGCGGTTCACTGCCGGCCAGGTACAg                                                                                                                                               >  8:124141/1‑119 (MQ=255)                                                       aTGTCGAGGCGCAGGAAGCGGTCGAGGTGTTCTGCATGTCGCATGGGCTTCTCTTATATGGCCGGTCAGGCCTTGAGCGGTTCACTGCCGGCCAGGTACAGCTGCAGGCTGGACTTGCGTGCCATGAAGAACGAGACCTTgg                                                                                                      >  7:27236/1‑142 (MQ=255)                                                       aTGTCGAGGCGCAGGAAGCGGTCGAGGTGTTCTGCATGTCGCATGGGCTTCTCTTATATGGCCGGTCAGGCCTTGAGCGGTTCACTGCCGGCCAGGTACAGCTGCAGGCTGGACTTGCGTGCCATGAAGAACGAGACCTTgg                                                                                                      <  8:27236/142‑1 (MQ=255)                                                         gTCGAGGCGCAGGAAGCGGTCGAGGTGTTCTGCATGTCGCATGGGCTTCTCTTATATGGCCGGTCAGGCCTTGAGCGGTTCACTGCCGGCCAGGTACAGCTGCAGGCTGGACTTGCGTGCCATGAAGAACGAGACCTTGGCGGTGa                                                                                                >  3:4944/1‑146 (MQ=255)                                                          tCGAGGCGCAGGACGCGGGCGAGGTGTGCTGCATGTCGCATGCGCTTCTCTTATATGGCCGGTCAGGCCTTGAGCGGTTCACTGCCGGCCAGGTACAGCTGCAGGCTGGACTTGCGTGCCATGAAGAACGAGACCTTGGCGGTGATAg                                                                                             <  6:145369/148‑1 (MQ=255)                                                          tCGAGGCGCAGGAAGCGGTCGAGGTGTTCTGCATGTCGCATGGGCTTCTCTTATATGGCCGGTCAGGCCTTGAGCGGTTCACTGCCGGCCAGGTACAGCTGCAGGCTGGACTTGCGTGCCATGAAGAACGAGACCTTGGCGGTGATAGc                                                                                            >  1:179880/1‑149 (MQ=255)                                                                 gcAGGAAGCGGTCGAGGTGTTCTGCATGTCGCATGGGCTTCTCTTATATGGCCGGTCAGGCCTTGAGCGGTTCACTGCCGGCCAGGTACAGCTGCAGGCTGGACTTGCGTGCCATGAAGAACGAGACCTTGGCGGTGATAGCTGCggg                                                                                      >  8:62033/1‑148 (MQ=255)                                                                  cAGGAAGCGGTCGAGGTGTTCTGCATGTCGCATGGGCTTCTCTTATATGGCCGGTCAGGCCTTGAGCGGTTCACTGCCGGCCAGGTACAGCTGCAGGCTGGACTTGCGTGCCATGAAGAACGAGACCTTGGCGGTGATAGCTGCGGGTa                                                                                    >  3:144891/1‑149 (MQ=255)                                                                    ggAAGCGGTCGAGGTGTTCTGCATGTCGCATGGGCTTCTCTTATATGGCCTGTCAGGCCTTGAGCGGTTCACTGCCGGCCAGGTACAGCTGCAGGCTGGACTTGCGTGCCATGAAGAACGAGACCTTGGCGGTGATAGCTGCGGGTACa                                                                                  <  6:76906/149‑1 (MQ=255)                                                                     gAAGCGGTCGAGGTGTTCTGCATGTCGCATGGGCTTCTCTTATATGGCCGGTCAGGCCTTGAGCGGTTCACTGCCGGCCAGGTACAGCTGCAGGCTGGACTTGCGTGCCATGAAGAACGAGACCTTg                                                                                                       <  7:190207/127‑1 (MQ=255)                                                                     gAAGCGGTCGAGGTGTTCTGCATGTCGCATGGGCTTCTCTTATATGGCCGGTCAGGCCTTGAGCGGTTCACTGCCGGCCAGGTACAGCTGCAGGCTGGACTTGCGTGCCATGAAGAACGAGACCTTg                                                                                                       >  8:190207/1‑127 (MQ=255)                                                                      aaGCGGTCGAGGTGTTCTGCATGTCGCATGGGCTTCTCTTATATGGCCGGTCAGGCCTTGAGCGGTTCACTGCCGGCCAGGTACAGCTGCAGGCTGGACTTGCGTGCCATGAAGAACGAGACCTTGGCGGTGATAGCTGCGGGTa                                                                                    >  3:188124/1‑145 (MQ=255)                                                                        gCGGTCGAGGTGTTATGCATGTCGCATGGGCTTCTCTTATATGGCCGGTCAGGCCTTGAGCGGTTCACTGCCGGCCAGGTACAGCTGCAGGCTGGACTTGCGTGCCATGAAGAACGAGACCTTGGCGGTGATAGCTGCAGGTACAgatt                                                                              <  5:139183/149‑1 (MQ=255)                                                                           gTCGAGGTGTTCTGCATGTCGCATGGGCTTCTCTTATATGGCCGGTCAGGCCTTGAGCGGTTCACTGCCGGCCAGGTACAGCTGCAGGCTGGACTTGCGTGCCATGAAGAACGAGACCTTGGCGGTGATAGCTGCGGGTACAgattcga                                                                           >  8:15948/1‑149 (MQ=255)                                                                                 gtgtTCTGCATGTCGCATGGGCTTCTCTTATATGGCCGGTCAGGCCTTGAGCGGTTCACTGCCGGCCAGGTACAGCTGCAGGCTGGACTTGCGTGCCATGAAGAACGAGACCTTGGCGGTGATAGCTGCGGGTACAGATTCGATTCGt                                                                      <  8:123453/148‑1 (MQ=255)                                                                                     tCTGCATGTCGCATGGGCTTCTCTTATATGGCCGGTCAGGCCTTGAGCGGTTCACTGCCGGCCAGGTACAGCTGCAGGCTGGACTTGCGTGCCATGAAGAACGAGACCTTGGCGGTGATAGCTGCGGGTACAGATTCGATTCGTCTGc                                                                  <  7:62033/148‑1 (MQ=255)                                                                                        gCATGTCGCATGGGCTTCTCTTATATGGCCGGTCAGGCCTTGAGCGGTTCACTGCCGGCCAGGTACAGCTGCAGGCTGGACTTGCGTGCCATGAAGAACGAGACCTTGGCGGTGATAGCTGCGGGTACAgattcgattc                                                                        <  7:181856/139‑1 (MQ=255)                                                                                        gCATGTCGCATGGGCTTCTCTTATATGGCCGGTCAGGCCTTGAGCGGTTCACTGCCGGCCAGGTACAGCTGCAGGCTGGACTTGCGTGCCATGAAGAACGAGACCTTGGCGGTGATAGCTGCGGGTACAgattcgattc                                                                        >  8:181856/1‑139 (MQ=255)                                                                                         cATGTCGCATGGGCTTCTCTTATATGGCCGGTCAGGCCTTGAGCGGTTCACTGCCGGCCAGGTACAGCTGCAGGCTGGACTTGCGTGCCATGAAGAACGAGACCTTGGCGGTGa                                                                                                <  4:218861/114‑1 (MQ=255)                                                                                         cATGTCGCATGGGCTTCTCTTATATGGCCGGTCAGGCCTTGAGCGGTTCACTGCCGGCCAGGTACAGCTGCAGGCTGGACTTGCGTGCCATGAAGAACGAGACCTTGGCGGTGATAGCTGCGGGTACAGATTCGATTCGTCTGCTCGt                                                              <  6:41588/148‑1 (MQ=255)                                                                                                 aTGGGCTTCTCTTATATGGCCGGTCAGGCCTTGAGCGGTTCACTGCCGGCCAGGTACAGCTGCAGGCTGGACTTGCGTGCCATGAAGAACGAGACCTTGGCGGTGATAGCTGCGGGTACAGATTCGATTCGTCTGCTCGTCCCGCctct                                                     >  4:198864/1‑149 (MQ=255)                                                                                                   gggCTTCTCTTATATGGCCGGTCAGGCCTTGAGCGGTTCACTGCCGGCCAGGTACAGCTGCAGGCTGGACTTGCGTGCCATGAAGAACGAGACCTTGGCGGTGATAGCTGCGGGTACAGATTCGATTCGTCTGCTCGTCCCGCCtctc                                                    <  4:4944/148‑1 (MQ=255)                                                                                                      cTTCTCTTATATGGCCGGTCAGGCCTTGAGCGGTTCACTGCCGGCCAGGTACAGCTGCAGGCTGGACTTGCGTGCCATGAAGAACGAGACCTTGGCGGTGATAGCTGCGGGTACAGATTCGATTCGTCTGCTCGTCCCGCCTCTCCTgg                                                <  4:91085/149‑1 (MQ=255)                                                                                                          tctTATATGGCCGGTCAGGCCTTGAGCGGTTCACTGCCGGCCAGGTACAGCTGCAGGCTGGACTTGCGTGCCATGAAGAACGAGACCTTGGCGGTGATAGCTGCGGGTACAGATTCGATTCGTCTGCTCGTCCCGCCTCTCCTgg                                                <  5:86013/145‑1 (MQ=255)                                                                                                          tctTATATGGCCGGTCAGGCCTTGAGCGGTTCACTGCCGGCCAGGTACAGCTGCAGGCTGGACTTGCGTGCCATGAAGAACGAGACCTTGGCGGTGATAGCTGCGGGTACAGATTCGATTCGTCTGCTCGTCCCGCCTCTCCTgg                                                >  6:86013/1‑145 (MQ=255)                                                                                                            ttATATGGCCGGTCAGGCCTTGAGCGGTTCACTGCCGGCCAGGTACAGCTGCAGGCTGGACTTGCGTGCCATGAAGAACGAGACCTTGGCGGTGATAGCTGCgg                                                                                       >  7:54881/1‑104 (MQ=255)                                                                                                            ttATATGGCCGGTCAGGCCTTGAGCGGTTCACTGCCGGCCAGGTACAGCTGCAGGCTGGACTTGCGTGCCATGAAGAACGAGACCTTGGCGGTGATAGCTGCgg                                                                                       <  8:54881/104‑1 (MQ=255)                                                                                                              atatGGCCGGTCAGGCCTTGAGCGGTTCACTGCCGGCCAGGTACAGCTGCAGGCTGGACTTGCGTGCCATGAAGAACGAGAc                                                                                                           >  3:228615/1‑82 (MQ=255)                                                                                                              atatGGCCGGTCAGGCCTTGAGCGGTTCACTGCCGGCCAGGTACAGCTGCAGGCTGGACTTGCGTGCCATGAAGAACGAGAc                                                                                                           <  4:228615/82‑1 (MQ=255)                                                                                                              atatGGCCGGTCAGGCCTTGAGCGGTTCACTGCCGGCCAGGTACAGCTGCAGGCTGGACTTGCGTGCCATGAAGAACGAGACCTTGGCGGTGATAGCTGCGGGTACAGATTCGATTCGTCTGCTCGTCCCGCCTCTCCTGGGTGCgg                                          <  2:179880/147‑1 (MQ=255)                                                                                                              atatGGCCGGTCAGGCCTTGAGCGGTTCACTGCCGGCCAGGTACAGCTGCAGGCTGGACTTGCGTGCCATGAAGAACGAGACCTTGGCGGTGATAGCTGCGGGTACAGATTCGATTCGTCTGCTCGTCCCGCCTCTCCTGGGTGCGga                                         <  3:198864/148‑1 (MQ=255)                                                                                                              acctggccggcagtgaaccgctcaaggcctgaccggccaGGTACAGCTGCAGGCTGGACTTGCGTGCCATGAAGAACGAGACCTTGGCGGTGATAGCTGCGGGTACAGATTCGATTCGTCTGCTCGTCCCGCCTCTCCTGGGTGCg                                           >  3:88647‑M2/40‑146 (MQ=255)                                                                                                                ctggccggcagtgaaccgctcaaggcctgaccggccaGGTACAGCTGCAGGCTGGACTTGCGTGCCATGAAGAACGAGACCTTGGCGGTGATAGCTGCGGGTACAGATTCGATTCGTCTGCTCGTCCCGCCTCTCCTGGGTGCGGAGaa                                      >  7:242009‑M2/38‑149 (MQ=255)                                                                                                                ctggccggcagtgaaccgctcaaggcctgaccggccaGGTACAGCTGCAGGCTGGACTTGCGTGCCATGAAGAACGAGACCTTGGCGGTGATAGCTGCGGGTACAGATTCGATTCGTCTGCTCGTCCCGCCTCTCCTGGGTGCGGAGaa                                      <  8:242009‑M2/112‑1 (MQ=255)                                                                                                                ctggccggcagtgaaccgctcaaggcctgaccggccaGGTACAGCTGCAGGCTGGACTTGCGTGCCATGAAGAACGAGACCTTGGCGGTGATAGCTGCGGGTACAGATTCGATTCGTCTGCTCGTCCCGCCTCTCCTGGGTGCGGAGaa                                      >  3:63887‑M2/38‑149 (MQ=255)                                                                                                                 TGGCCGGTCAGGCCTTGAGCGGTTCACTGCCGGCCAGGTACAGCTGCAGGCTGGACTTGCGTGCCATGAAGAACGAGACCTTGGCGGTGATAGCTGCGGGTACAGATTCGATTCGTCTGCTCGTCACGCCTCTCCTGGGTGCGGAGaa                                      <  3:6918‑M1/148‑1 (MQ=255)                                                                                                                  GGCCGGTCAGGCCTTGAGCGGTTCACTGCCGGCCAGGTACAGCTGCAGGCTGGACTTGCGTGCCATGAAGAACGAGACCTTGGCGGTGATAGCTGCGGGTACAGATTCGATTCGTCTGCTCGTCCCGCCTCTCCTGGGTGCGGAGaat                                     <  5:129091‑M1/148‑1 (MQ=255)                                                                                                                        tCAGGCCTTGAGCGGTTCACTGCCGGCCAGGTACAGCTGCAGGCTGGACTTGCGTGCCATGAAGAACGAGACCTTGGCTGTGATAGCTGCGGGTACAGATTCGATTCGTCTGCTCGTCCCGCCTCTCCTGGGTGCGGAGAATAAtgctg                              <  1:83342/149‑1 (MQ=255)                                                                                                                            gCCTTGAGCGGTTCACTGCCGGCCAGGTACAGCTGCAGGCTGGACTTGCGTGCCATGAAGAACGAGACCTTGGCGGTGATAGCTGCGGGTACAGATTCGATTCGTCTGCTCGTCCCGCCTCTCCTGGGTGCGGAGAATAATGCTGCAGt                          >  4:171622/1‑149 (MQ=255)                                                                                                                              cTTGAGCGGTTCACTGCCGGCCAGGTACAGCTGCAGGCTGGACTTGCGTGCCATGAAGAACGAGACCTTGGCGGTGATAGCTGCGGGTACAGATTCGATTCGTCTGCTCGTCCCGCCTCTCCTGGGTGCGGAGAATAATGCTGCAGTgg                        <  7:15948/149‑1 (MQ=255)                                                                                                                                       ttCACTGCCGGCCAGGTACAGCTGCAGGCTGGACTTGCGTGCCATGAAGAACGAGACCTTGGCGGTGATAGCTGCGGGTACAGATTCGATTCGTCTGCTCGTCCCGCCTCTCCTGGGTGCGGAGAATAATGCTGCAGTGGTACATTTcc               <  4:6918/149‑1 (MQ=255)                                                                                                                                           cTGCCGGCCAGGTACAGCTGCAGGCTGGACTTGCGTGCCATGAAGAACGAGACCTTGGCGGTGATAGCTGCGGGTACAGATTCGATTCGTCTGCTCGTCCCGCCTCTCCTGGGTGCGGAGAATAATGCTGCAGTGGTACATTTCCTGAt           <  4:144891/149‑1 (MQ=255)                                                                                                                                            tGCCGGCCAGGTACAGCTGCAGGCTGGACTTGCGTGCCATGAAGAACGAGACCTTGGCGGTGATAGCTGCGGGTACAGATTCGATTCGTCTGCTCGTCCCGCCTCTCCTGGGTGCGGAGAATAATGCTGCAGTGGTACATTTCCTGATc          >  6:23817/1‑149 (MQ=255)                                                                                                                                              ccggccaGGTACAGCTGCAGGCTGGACTTGCGTGCCATGAAGAACGAGACCTTGGCGGTGATAGCTGCGGGTACAGATTCGATTCGTCTGCTCGTCCCGCCTCTCCTGGGTGCGGAGAATAATGCTGCAGTGGTACATTTCCTGATc          <  6:129091‑M2/140‑1 (MQ=255)                                                                                                                                              ccggccaGGTACAGCTGCAGGCTGGACTTGCGTGCCATGAAGAACGAGACCTTGGCGGTGATAGCTGCGGGTACAGATTCGATTCGTCTGCTCGTCCCGCCTCTCCTGGGTGCGGAGAATAATGCTGCAGTGGTACATTTCCTGATCGt        <  4:188124‑M2/142‑1 (MQ=255)                                                                                                                                                    aGGTACAGCTGCAGGCTGGACTTGCGTGCCATGAAGAACGAGACCTTGGCGGTGATAGCTGCGGGTACAGATTCGATTCGTCTGCTCGTCCCGCCTCTCCTGGGTGCGGAGAATAATGCTGCAGTGGTACATTTCCTGATCGTCAAAAg  <  4:88647‑M2/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    TCACGGATTCCGCGATAGGCGGTGTCCCGGTCTATCCTCGTCAAGTGCAGCAACATGTCGAGGCGCAGGAAGCGGTCGAGGTGTTCTGCATGTCGCATGGGCTTCTCTTATATGGCCGGTCAGGCCTTGAGCGGTTCACTGCCGGCCAGGTACAGCTGCAGGCTGGACTTGCGTGCCATGAAGAACGAGACCTTGGCGGTGATAGCTGCGGGTACAGATTCGATTCGTCTGCTCGTCCCGCCTCTCCTGGGTGCGGAGAATAATGCTGCAGTGGTACATTTCCTGATCGTCAAAAG  >  NC_002947/2673713‑2674008

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.