New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4520698	51 (1.210)	3 (0.070)	3/246	NT	6.1%	coding (1040/1257 nt)	icd	NADP(+)‑specific isocitrate dehydrogenase
	?	NC_002947	= 4520766	44 (1.090)					coding (972/1257 nt)	icd	NADP(+)‑specific isocitrate dehydrogenase

CCACCCCATGTGGCGCAGCATCATCTCTGCCGAGAGGATCACCGAGCCCGGGTTGACCTTGTCCTGCCCGGCATACTTGGGCGCAGTGCCGTGAGTGGCCTCGAACATGGCCACGGTGTCGGACAGGTTGGCGCCCGGGGCAATGCCGATACCGCCCACTTCTGCGGCCAGGGCATCGGACAGGTAGTCACCGTTGAGGTTGAGGGTGGCG‑ATCACGTCGTACTCGGCCGGGCGTAGCAGGATCTGCTGCAGCATGGCGTCGGCGATGGCGTCCTTGACGATGACCTCGC  >  NC_002947/4520625‑4520914                                                                                                                                              |                                                                                                                                                      ccACCCCATGTGGCGCAGCATCATCTCTGCCGAGAGGATCACCGAGCCCGGGTTGACCTTGTCCTGCCCGGCATACTTGGGCGCAGTGCCGTGAGTGGCCTCGAACATGGCCACGGTGTCGGACAGGTTGGCGCCCGGGGCAATGCCGa                                                                                                                                                >  1:166652/1‑149 (MQ=255)   aCCCCATGTGGCGCAGCATCATCTCTGCCGAGAGGATCACCGAGCCCGGGTTGACCTTGTCCTGCCCGGCATACTTGGGCGCAGTGCCGTGAGTGGCCTCGAACATGGCCACGGTGTCGGACAGGTTGGCGCCCGGGGCAATGCCGATa                                                                                                                                              >  5:172759/1‑149 (MQ=255)     cccATGTGGCGCAGCATCATCTCTGCCGAGAGGATCACCGAGCCCGGGTTGACCTTGTCCTGCCCGGCATACTTGGGCGCAGTGCCGTGAGTGGCCTCGAACATGGCCACGGTGTCGGACAGGTTGGCGCCCGGGGCAATGCCGATAcc                                                                                                                                            >  7:208323/1‑149 (MQ=255)        aTGTGGCGCAGTATCATCTCTGCCGAGAGGATCACCGAGCCCGGGTTGACCTTGTCCTGCCCGGCATACTTGGGCGCAGTGCCGTGAGTGGCCTCGAACATGGCCACGGTGTCGGACAGGTTGGCGCCCGGGGCAATGCCGATACCGcc                                                                                                                                         >  8:72859/1‑149 (MQ=255)             gcgcAGCATCATCTCTGCCGAGAGGATCACCGAGCCCGGGTTGACCTTGTCCTGCCCGGCATACTTGGGCGCAGTGCCGTGAGTGGCCTCGAACATGGCCACGGTGTCGGACAGGTTGGCGCCCGGGGCAATGCCGATACCGCCCACtt                                                                                                                                    <  1:159958/149‑1 (MQ=255)                 agcaTCATCTCTGCCGAGAGGATCACCGAGCCCGGGTTGACCTTGTCCTGCCCGGCATACTTGGGCGCAGTGCCGTGAGTGGCCTCGAACATGGCCACGGTGTCGGACAGGTTGGCGCCCGGGGCAATGCCGATACCGCCCACTTCTGc                                                                                                                                <  2:166652/149‑1 (MQ=255)                     tcatcTCTGCCGAGAGGATCACCGAGCCCGGGTTGACCTTGTCCTGCCCGGCATACTTGGGCGCAGTGCCGTGAGTGGCCTCGAACATGGCCACGGTGTCGGACAGGTTGGCGCCCGGGGCAATGCCGATACCGCCCACTTCTGCGGc                                                                                                                             >  8:100302/1‑148 (MQ=255)                              ccGAGAGGATCACCGAGCCCGGGTTGACCTTGTCCTGCCCGGCATACTTGGGCGCAGTGGCGTGAGTGGCCTCGAACATGGCCACGGTGTCGGACAGGTTGGCGCCCGGGGCAATGCCGATACCGCCCACTTCTGCGGCCAGGGCATCg                                                                                                                   >  5:247630/1‑149 (MQ=255)                                      aTCACCGAGCCCGGGTTGACCTTGTCCTGCCCGGCATACTTGGGCGCAGTGCCGTGAGTGGCCTCGAACATGGCCACGGTGTCGGACAGGTTGGCGCCCGGGGCAATGCCGATACCGCCCACTTCTGCGGCCAg                                                                                                                          <  8:113274/134‑1 (MQ=255)                                      aTCACCGAGCCCGGGTTGACCTTGTCCTGCCCGGCATACTTGGGCGCAGTGCCGTGAGTGGCCTCGAACATGGCCACGGTGTCGGACAGGTTGGCGCCCGGGGCAATGCCGATACCGCCCACTTCTGCGGCCAg                                                                                                                          >  7:113274/1‑134 (MQ=255)                                        cACCGAGCCCGGGTTGACCTTGTCCTGCCCGGCATACTTGGGCGCAGTGCCGTGAGTGGCCTCGAACATGGCCACGGTGTCGGACAGGTTGGCGCCCGGGGCAATGCCGATACCGCCCACTTCTGCGGCCAGGGCAt                                                                                                                     <  7:185677/137‑1 (MQ=255)                                        cACCGAGCCCGGGTTGACCTTGTCCTGCCCGGCATACTTGGGCGCAGTGCCGTGAGTGGCCTCGAACATGGCCACGGTGTCGGACAGGTTGGCGCCCGGGGCAATGCCGATACCGCCCACTTCTGCGGCCAGGGCAt                                                                                                                     >  8:185677/1‑137 (MQ=255)                                        cACCGAGCCCGGGTTGACCTTGTCCTGCCCGGCATACTTGGGCGCAGTGCCGTGAGTGGCCTCGAACATGGCCACGGTGTCGGACAGGTTGGCGCCCGGGGCAATGCCGATACCGCCCACTTCTGCGGCCAGGGCATCGGACAGGTAGt                                                                                                         >  4:114706/1‑149 (MQ=255)                                           cGAGCCCGGGTTGACCTTGTCCTGCCCGGCATACTTGGGCGCAGTGCCGTGAGTGGCCTCGAACATGGCCACGGTGTCGGACAGGTTGGCGCCCGGGGCAATGCCGATACCGCCCACTTCTGCGGCCAGGGCATCGGACAGGTAGTCAc                                                                                                      >  4:219894/1‑149 (MQ=255)                                            gAGCCCGGGTTGACCTTGTCCTGCCCTGCATACTTGGGCGCAGTGCCGTGAGCGGCCTCTAACATGGCCAGGGTGTCGGACAGGTTGGCGCCCGGGGCAATGCCGATACCGCCCACTTCTGCGGGCAGGGCATCGGACAGGTAGTCAcc                                                                                                     <  3:41199/149‑1 (MQ=255)                                                ccGGGTTGACCTTGTCCTGCCCGGCATACTTGGGCGCAGTGCCGTGAGTGGCCTCGAACATGGCCACGGTGTCGGACAGGTTGGCGCCCGGGGCAATGCCGATACCGCCCACTTCTGCGGCCAGGGCATCGGACAGGTAGTCACCgtt                                                                                                  >  2:199320/1‑148 (MQ=255)                                                 cGGGTTGACCTTGTCCTGCCCGGCATACTTGGGCGCAGTGCCGTGAGTGGCCTCGAACATGGCCACGGTGTCGGACAGGTTGGCGCCCGGGGCAATGCCGATACCGCCCACTTCTGCGGCCAGGGCATCGGACAGGTAGTCACCgttga                                                                                                <  1:15547/149‑1 (MQ=255)                                                  gggTTGACCTTGTCCTGCCCGGCATACTTGGGCGCAGTGCCGTGAGTGGCCTCGAACGTGGCCACGGTGTCGGACAGGTTGGCGCCCGGGGCAATGCCGATACCGCCCACTTCTGCGGCCAGGGCATCGGACAGGTAGTCACCgttgag                                                                                               <  4:14556/149‑1 (MQ=255)                                                  gggTTGACCTTGTCCTGCCCGGCATACTTGGGCGCAGTGCCGTGAGTGGCCTCGAACATGGCCACGGTGTCGGACAGGTTGGCGCCCGGGGCAATGCCGATACCGCCCACTTCTGCGGCCAGGGCATCGGACAGGTAGTCACCgttgag                                                                                               <  6:172759/149‑1 (MQ=255)                                                         ccTTGTCCTGCCCGGCATACTTGGGCGCAGTGCCGTGAGTGGCCTCGAACATGGCCACGGTGTCGGACAGGTTGGCGCCCGGGGCAATGCCGATACCGCCCACTTCTGCGGCCAGGGCATCGGACAGGTAGTCACCGttgaggttgagg                                                                                        <  7:100302/149‑1 (MQ=255)                                                            tGTCCTGCCCGGCATACTTGGGCGCAGTGCCGTGAGTGGCCTCGAACATGAACACGGTGTCGGACAGGTTGGCGCCCGGGGCAATGCCGATACCGCCCACTTCTGCGGCCAGGGCATCGGACAGGTAGTCACCGTTGAGGTTGAGGGTg                                                                                     >  1:67396/1‑149 (MQ=255)                                                                 tGCCCGGCATACTTGGGCGCAGTGCCGTGAGTGGCCTCGAACATGGCCACGGTGTCGGACAGGTTGGCGCCCGGGGCAatgccgggcaggacaaggtcaacccgggctcggtgatcctctcggcagagatgctgctgcgccacatgggg                                                                                <  4:68614‑M2/149‑72 (MQ=255)                                                                   cccGGCATACTTGGGCGCAGTGCCGTGAGTGGCCTCGAACATGGCCACGGTGTCGGACAGGTTGGCGCCCGGGGCAatgccgggcaggacaaggtcaacccgggctcggtgatcctctcggcagagatgatgctgcgccacatggggtg                                                                              <  5:39314‑M2/149‑74 (MQ=255)                                                                   cccGGCATACTTGGGCGCAGTGCCGTGAGTGGCCTCGAACATGGCCACGGTGTCGGACAGGTTGGCGCCCGGGGCAatgc                                                                                                                                                   <  1:65446‑M2/80‑5 (MQ=255)                                                                   cccGGCATACTTGGGCGCAGTGCCGTGAGTGGCCTCGAACATGGCCACGGTGTCGGACAGGTTGGCGCCCGGGGCAatgc                                                                                                                                                   >  2:65446‑M2/1‑76 (MQ=255)                                                                   cccGGCATACTTGGGCGCAGTGCCGTGAGTGGCCTCGAACATGGCCACGGTGTCGGACAGGTTGGCGCCCGGGGCAATGCCGATACCGCCCACTTCTGCGGCCAGGGCATCGGACAGGTAGTCACCGTTGAGGTTGAGGGTGGCG‑ATc                                                                              <  2:200584/148‑1 (MQ=255)                                                                   cccGGCATACTTGGGCGCAGTGCCGTGAGTGGCCTCGAACATGGCCACGGTGTCGGACAGGTTGGCGCCCGGGGCAATGCCGATACCGCCCACTTCTGCGGCCAGGGCATCGGACAGGTAGTCACCGTTGAGGTTGAGGGTGGCG‑ATCa                                                                             >  8:93128/1‑149 (MQ=255)                                                                          tACTTGGGCGCAGTGCCGTGAGTGGCCTCGAACATGGCCACGGTGTCGGACAGGTTGGCGCCCGGGGCAatgccgggcaggacaaggtcaacccgggctcggtgatcctctcggcagagatgatgctgcgccacatggggtggaccgag                                                                       >  6:39314‑M2/1‑69 (MQ=255)                                                                                 gcgcAGTGCCGTGAGTGGCCTCGAACATGGCCACGGTGTCGGACAGGTTGGCGCCCGGGGCAATGCCGATACCGCCCACTTCTGCGGCCAGGGCATCGGACAGGTAGTCACCGTTGAGGTTGAGGGTGGCG‑ATCACGTCGTACTCGGcc                                                               >  3:121107/1‑149 (MQ=255)                                                                                         ccGTGAGTGGCCTCGAACATGGCCACGGTGTCGGACAGGTTGGCGCCCGGGGCAATGCCGATACCGCCCACTTCTGCGGCCAGGGCATCGGACAGGTAGTCACCGTTGAGGTTGAGGGTGGCG‑ATCACGTCGTACTCGGCCGGGCGTa                                                        <  4:121107/148‑1 (MQ=255)                                                                                         ccGTGAGTGGCCTCGAACATGGCCACGGTGTCGGACAGGTTGGCGCCCGGGGCAATGCCGATACCGCCCACTTCTGCGGCCAGGGCATCGGACAGGTAGTCACCGTTGAGGTTGAGGGTGGCG‑ATCACGTCGTACTCGGCCGGGCGTAg                                                       >  6:20529/1‑149 (MQ=255)                                                                                            tGAGTGGCCTCGAACATGGCCACGGTGTCGGACAGGTTGGCGCCCGGGGCAATGCCGATACCGCCCACTTCTGCGGCCAGGGCATCGGACa                                                                                                               <  4:126895/91‑1 (MQ=255)                                                                                            tGAGTGGCCTCGAACATGGCCACGGTGTCGGACAGGTTGGCGCCCGGGGCAATGCCGATACCGCCCACTTCTGCGGCCAGGGCATCGGACa                                                                                                               >  3:126895/1‑91 (MQ=255)                                                                                                    cTCGAACATGGCCACGGTGTCGGACAGGTTGGCGCCCGGGGCAATGCCGATACCGCCCACTTCTGCGGCCAGGGCATCGGACAGGTAGTCACCGTTGAGGTTGAGGGTGGCG‑ATCACGTCGTACTCg                                                                  >  3:13782/1‑127 (MQ=255)                                                                                                    cTCGAACATGGCCACGGTGTCGGACAGGTTGGCGCCCGGGGCAATGCCGATACCGCCCACTTCTGCGGCCAGGGCATCGGACAGGTAGTCACCGTTGAGGTTGAGGGTGGCG‑ATCACGTCGTACTCg                                                                  <  4:13782/127‑1 (MQ=255)                                                                                                    cTCGAACATGGCCACGGTGTCGGACAGGTTGGCGCCCGGGGCAATGCCGATACCGCCCACTTCTGCGGCCAGGGCATCGGACAGGTAGTCACCGTTGAGGTTGAGGGTGGCG‑ATCACGTCGTACTCGGCCGGGCGTAGCAGGATctgct                                            >  2:29178/1‑149 (MQ=255)                                                                                                      cGAACATGGCCACGGTGTCGGACAGGTTGGCGCCCGGGGCAATGCCGATACCGCCCACTTCTGCGGCCAGGGCATCGGACAGGTAGTCACCGTTGAGGTTGAGGGTGGCG‑ATCACGTCGTACTCGGCCGGGCGTAGCAGGATctgctg                                           >  5:268706/1‑148 (MQ=255)                                                                                                       gAAGATGGCCACGGTGTCGGACAGGTTGGCGCCCGTGGAAATGCCGATACCGGCCACTTCTGCTGCCAGTGCATCGGACAGGTAGTCACCGTTGAGGTTGAGGGTGGCG‑ATCACGTCGTACTCGGCCGGGCGTAGCAGGATCTGCTgca                                         <  6:268706/149‑1 (MQ=255)                                                                                                            tGGCCACGGTGTCGGACAGGTTGGCGCCCGGGGCAATGCCGATACCGCCCACTTCTGCGGCCAGGGCATCGGACAGGTAGTCACCGTTGAGGTTGAGGGTGGCG‑ATCACGTCGTACTCGGCCGGGCGTAGCAGGATCTGCTGCAGCATg                                    >  8:54590/1‑149 (MQ=255)                                                                                                                cACGGTGTCGGACAGGTTGGCGCCCGGGGCAATGCCGATACCGCCCACTTCTGCGGCCAGGGCATCGGACAGGTAGTCACCGTTGAGGTTGAGGGTGGCG‑ATCACGTCGTACTCGGCCg                                                              >  5:57538/1‑119 (MQ=255)                                                                                                                cACGGTGTCGGACAGGTTGGCGCCCGGGGCAATGCCGATACCGCCCACTTCTGCGGCCAGGGCATCGGACAGGTAGTCACCGTTGAGGTTGAGGGTGGCG‑ATCACGTCGTACTCGGCCg                                                              <  6:57538/119‑1 (MQ=255)                                                                                                                 aCGGTGTCGGACAGGTTGGCGCCCGGGGCAATGCCGATACCGCCCACTTCTGCGGCCAGGGCATCGGACAGGTAGTCACCGTTGAGGTTGAGGGTGGCGTATCACGTCGTACTCGGCCGGGCGTAGCAGGATCTGCTGCAGCATGGCGt                                <  1:199320/149‑1 (MQ=255)                                                                                                                     tgtCGGACAGGTTGGCGCCCGGGGCAATGCCGATACCGCCCACTTCTGCGGCCAGGGCATCGGACAGGTAGTCACCGTTGAGGTTGAGGGTGGCG‑ATCACGTCGTACTCGGCCGGGCGTAGCAGGATCTGCTGCAGCATGGCGTCGGCg                           <  5:13451/149‑1 (MQ=255)                                                                                                                      gtCGGACAGGTTGGCGCCCGGGGCAATGCCGATACCGCCCACTTCTGCGGCCAGGGCATCGGACAGGTAGTCACCGTTGAGGTTGAGGGTGGCG‑ATCACGTCGTACTCGGCCGGGCGTAGCAGGATctg                                              >  8:103839/1‑129 (MQ=255)                                                                                                                      gtCGGACAGGTTGGCGCCCGGGGCAATGCCGATACCGCCCACTTCTGCGGCCAGGGCATCGGACAGGTAGTCACCGTTGAGGTTGAGGGTGGCG‑ATCACGTCGTACTCGGCCGGGCGTAGCAGGATctg                                              <  7:103839/129‑1 (MQ=255)                                                                                                                       tCGGACAGGTTGGCGCCCGGGGCAATGCCGATACCGCCCACTTCTGCGGCCAGGGCATCGGACAGGTAGTCACCGTTGAGGTTGAGGGTGGCG‑ATCACGTCGTACTCGGCCGGGCGTAGCAGGATCTGCTGCAGCATGGCGTCGGCGAt                         <  3:114706/149‑1 (MQ=255)                                                                                                                         ggACAGGTTGGCGCCCGGGGCAATGCCGATACCGCCCACTTCTGCGGCCAGGGCATCGGACAGGTAGTCACCGTTGAGGTTGAGGGTGGCG‑ATCACGTCGTACTCGGCCGGGCGTAGCAGGATCTGCTGCAGCATGGCGTCGGCGATgg                       >  6:15354/1‑149 (MQ=255)                                                                                                                                 tgccgcACGGGGCAATGCCGATACCGCCCACTTCTGCGGCCAGGGCATCGGACAGGTAGTCAGCGTTGAGGTTGAGGGTGGCG‑ATCACGTCGTACTCGGCCGGGCGTAGCAGGATCTGCTGCAGCATGGCGTCGGCGATGGCGTCCtt                >  1:78100/4‑148 (MQ=255)                                                                                                                                   gcgcCCGGGGCAATGCCGATACCGCCCACTTCTGCGGCCAGGGCATCGGACAGGTAGTCACCGTTGAGGTTGAGGGTGGCG‑ATCACGTCGTACTCGGCCGGGCGTAGCAGGATCTGCTGCAGCATGGCGTCGGCGATGGCGTCCTTGa              <  7:93128/148‑1 (MQ=255)                                                                                                                                      cccGGGGCAATGCCGATACCGCCCACTTCTGCGGCCAGGGCATCGGACAGGTAGTCACCGTTGAGGTTGAGGGTGGCG‑ATCACGTCGTACTCGGCCGGGCGTAGCAGGATCTGCTGCAGCATGGCGTCGGCGATGGCGTCCTTGACGAt          <  2:67396/149‑1 (MQ=255)                                                                                                                                       ccGGGGCAATGCCGATACCGCCCACTTCTGCGGCCAGGGCATCGGACAGGTAGTCACCGTTGAGGTTGAGGGTGGCG‑ATCACGTCGTACTCGGCCGGGCGTAGCAGGATCTGCTGCAGCATGGCGTCGGCGATGGCGTCCTTGACGAt          >  7:83363/1‑148 (MQ=255)                                                                                                                                       ccGGGGCAATGCCGATACCGCCCACTTCTGCGGCCAGGGCATCGGACAGGTAGTCACCGTTGAGGTTGAGGGTGGCG‑ATCACGTCGTACTCGGCCGGGCGTAGCAGGATCTGCTGCAGCATGGCGTCGGCGATGGCGTCCTTGACGATg         <  1:29178/149‑1 (MQ=255)                                                                                                                                            gCAATGCCGATACCGCCCACTTCTGCGGCCAGGGCATCGGACAGGTAGTCACCGTTGAGGTTGAGGGTGGCG‑ATCACGTCGTACTCGGCCGGGCGTAGCAGGATCTGCTGCAGCATGGCGTCGGCTATGGCGTCCTTGACGATGACCTc    <  2:118272/149‑1 (MQ=255)                                                                                                                                              aaTGCCGATACCGCCCACTTCTGCGGCCAGGGCATCGGACAGGTAGTCACCGTTGAGGTTGAGGGTGGCG‑ATCACGTCGTACTCGGCCGGGCGTAGCAGGATCTGCTGCAGCATGGCGTCGGCGATGGCGTCCTTGACGATGACCTcgc  <  3:219894/149‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                      CCACCCCATGTGGCGCAGCATCATCTCTGCCGAGAGGATCACCGAGCCCGGGTTGACCTTGTCCTGCCCGGCATACTTGGGCGCAGTGCCGTGAGTGGCCTCGAACATGGCCACGGTGTCGGACAGGTTGGCGCCCGGGGCAATGCCGATACCGCCCACTTCTGCGGCCAGGGCATCGGACAGGTAGTCACCGTTGAGGTTGAGGGTGGCG‑ATCACGTCGTACTCGGCCGGGCGTAGCAGGATCTGCTGCAGCATGGCGTCGGCGATGGCGTCCTTGACGATGACCTCGC  >  NC_002947/4520625‑4520914

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.