New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3279267 =	37 (1.150)	3 (0.110) +GTCGTATCAAAGGGTTGATAG	3/248	4.1	11.7%	coding (17/183 nt)	PP_2878	hypothetical protein
	?	NC_002947	5756593 =	16 (0.500)					intergenic (+270/‑418)	glnG/PP_5050	two‑component system DNA‑binding response regulator GlnL/GlnG/transposase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GACCAAGCTTTTCAGCTCTCAGCACCGCAGAAAAGCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3279305‑3279267 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCAC  >  NC_002947/5756593‑5756683                                        |||||||||||||||||||||                                                                                            GACCAAGCTTTTCAGCTCTCAGCACCGCAGAAAAGCTTGGTCGTATCAAAGGGTTGATAGCCGCGAAGAGGCCGGGCCTTCTGGCCAATCTCCACCCGTCGTTCATCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTAC     >  3:18826/1‑148  ACCAAGCTTTTCAGCTCTCAGCACCGCAGAAAAGCTTGGTCGTATCAAAGGGTTGATAGCCGCGAAGAGGCCGGGCCTTCTGGCCAATCTCCACCCGTCGTTCATCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACC    >  5:98484/1‑148    CAAGCTTTTCAGCTCTCAGCACCGCAGAAAAGCTTGGTCGTATCAAAGGGTTGATAGCCGCGAAGAGGCCGGGCCTTCTGGCCAATCTCCACCCGTCGTTCATCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCtt  >  7:50564/1‑146                                        |||||||||||||||||||||                                                                                            GACCAAGCTTTTCAGCTCTCAGCACCGCAGAAAAGCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3279305‑3279267 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCAC  >  NC_002947/5756593‑5756683

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.