New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3279267 =	37 (1.150)	3 (0.110) +GTCGTATCAAAGGGTTGATAG	3/248	4.1	11.7%	coding (17/183 nt)	PP_2878	hypothetical protein
	?	NC_002947	5756593 =	16 (0.500)					intergenic (+270/‑418)	glnG/PP_5050	two‑component system DNA‑binding response regulator GlnL/GlnG/transposase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTGATGCTGTTCCACCAGATACAGCTGATGGTGTGTGCTGTGCTGGCGCAGCGTTATGCCAGCCGTGAGCAGGCGGTGGAGGCTTCGGCGGTGTCTTGAGCGCCTTTACGTTCCCATGTAGATGCTGTGTTGGCGGTCAAGCTTTTCTGCGGTGCTGAGAGCTGAAAAGCTTGGTCGTATCAAAGGGTTGATAGCCGCGAAGAGGCCGGGCCTTCTGGCCAATCTCCACCCGTCGTTCATCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCTT  >  NC_002947/3279130‑3279414                                                                                                                                          |                                                                                                                                                    cTGATGCTGTTCCACCAGATACAGCTGATGGTGTGTGCTGTGCTGGCGCAGCGTTATGCCAGCCGTGAGCAGGCGGTGGAGGCTTCGGCGGTGTCTTGAGCGCCTTTACGTTCCCATGTAGATGCTGTGTTGGCGGTCAAGCTTTTCt                                                                                                                                           <  3:101223/148‑1 (MQ=255)        tGTTCCACCAGATACAGCTGATGGTGTGTGCTGTGCTGGCGCAGCGTTATGCCAGCCGTGAGCAGGCGGTGGAGGCTTCGGCGGTGTCTTGAGCGCCTTTACGTTCCCATGTAGATGCTGTGTTGGCGGTCAAGCTTTTCTGCGGTGc                                                                                                                                    <  4:1928/148‑1 (MQ=255)                  gATACAGCTGATGGTGGGTGCTGTGCTGGCGCAGCGGTATGCCAGCCGTGAGCAGGCGGTGGAGGCTTCGGCGGGGTCTTGAGCGCCTTTACGGTCCCATGTAGATGCTGTGTTGGCGGTCAAGCTTTTCTGCGGTGCTGAGAGCTGa                                                                                                                          <  6:43747/148‑1 (MQ=255)                             tGGTGTGTGCTGTGCTGGCGCAGCGGTATGCCAGCCGTGAGCAGGCGGTGGAGGCTTCGGCGGTGTCTTGAGCGCCTTTACGTTCCCATGTAGATGCTGTGTTGGCGGTCAAGCTTTTCTGCGGTGCTGAGAGCTGAAAAGCTTGGTc                                                                                                               <  8:54067/148‑1 (MQ=255)                                 gtgtgCTGTGCTGGCGCAGCGTTATGCCAGCCGTGAGCAGGCGGTGGAGGCTTCGGCGGTGTCTTGAGCGCCTTTACGTTCCCATGTAGATGCTGTGTTGGCGGTCAAGCTTTTCTGCGGTGCTGAGAGCTGAAAAGCTTGGTCg                                                                                                              >  4:25993/1‑145 (MQ=255)                                  tgtgctgtgcTGGCGCAGCGTTATGCCAGCCGTGAGCAGGCGGTGGAGGCTTCGGCGGTGTCTTGAGCGCCTTTACGTTCCCATGTAGATGCTGTGTTGGCGGTCAAGCTTTTCTGCGGTGCTGAGAGCTGAAAAGCTTGGTCGt                                                                                                             <  3:25993/145‑1 (MQ=255)                                  tgtgctgtgcTGGCGCAGCGTTATGCCAGCCGTGAGCAGGCGGTGGAGGCTTCGGCGGTGTCTTGAGCGCCTTTACGTTCCCATGTAGATGCTGTGTTGGCGGTCAAGCTTTTCTGCGGTGCTGAGAGCTGAAAAGCTTGGTCGTAt                                                                                                           >  5:129888/1‑147 (MQ=255)                                    tgctgtgctgGCGCAGCGTTATGCCAGCCGTGAGCAGGCGGTGGAGGCTTCGGCGGTGTCTTGAGCGCCTTTACGTTCCCATGTAGATGCTGTGTTGGCGGTCAAGCTTTTCTGCGGTGCTGAGAGCTGAAAAGCTTGGTCGTATc                                                                                                          >  3:132654/1‑146 (MQ=255)                                     gctgtgctgGCGCAGCGTTATGCCAGCCGTGAGCAGGCGGTGGAGGCTTCGGCGGTGTCTTGAGCGCCTTTACGTTCCCATGTAGATGCTGTGTTGGCGGTCAAGCTTTTCTGCGGTGCTGAGAGCTGAAAAGCTTGGTCGTATCaaa                                                                                                       <  3:99299/148‑1 (MQ=255)                                            tgGCGCAGCGTTATGCCAGCCGTGAGCAGGCGGTGGAGGCTTCGGCGGTGTCTTGAGCGCCTTTACGTTCCCATGTAGATGCTGTGTTGGCGGTCAAGCTTTTCTGCGGTGCTGAGAGCTGAAAAGCTTGGTCGTATCAAAGGGTTg                                                                                                 >  4:141053/1‑147 (MQ=255)                                             ggCGCAGCGTTATGCCAGCCGTGAGCAGGCGGTGGAGGCTTCGGCGGTGTCTTGAGCGCCTTTACGTTCCCATGTAGATGCTGTGTTGGCGGTCAAGCTTTTCTGCGGTGCTGAGAGCTGAAAAGCTTGGTCGTATCAAAGGGTTg                                                                                                 >  2:61762/1‑146 (MQ=255)                                                  aGCGTTATGCCAGCCGTGAGCAGGCGGTGGAGGCTTCGGCGGTGTCTTGAGCGCCTTTACGTTCCCATGTAGATGCTGTGTTGGCGGTCAAGCTTTTCTGCGGTGCTGAGAGCTGAAAAGCTTGGTCGTATCAAAGGGTTGATAGCcg                                                                                          >  6:167543/1‑148 (MQ=255)                                                     gTTATGCCAGCCGTGAGCAGGCGGTGGAGGCTTCGGCGGTGTCTTGAGCGCCTTTACGTTCCCATGTAGATGCTGTGTTGGCGGTCAAGCTTTTCTGCGGTGCTGAGAGCTGAAAAGCTTGGTCGTATCAAAGGGTTGATAGCcgc                                                                                         >  3:75990/1‑146 (MQ=255)                                                         tGCCCGCCGTGAGCAGGCGGTGGAGGCTTCGGCGGGGTCTTGAGCGCCTTTACGTTCCCATGTAGATGCTGTGTTGGCGGTCAAGCTTTTCTGCGGTGCTGAGAGCTGAAAAGCTTGGGCGTATCAAAGGGGTGATAGCCGCGAaga                                                                                    <  8:84636/147‑1 (MQ=255)                                                           ccAGCCGTGAGCAGGCGGTGGAGGCTTCGGCGGTGTCTTGAGCGCCTTTACGTTCCCATGTAGATGCTGTGTTGGCGGTCAAGCTTTTCTGCGGTGCTGAGAGCTGAAAAGCTTGGTCGTATCAAAGGGTTGATAGCCGCGAAGAGGc                                                                                 >  1:74950/1‑148 (MQ=255)                                                            cAGCCGTGAGCAGGCGGTGGAGGCTTCGGCGGTGTCTTGAGCGCCTTTACGTTCCCATGTAGATGCTGTGTTGGCGGTCAAGCTTTTCTGCGGTGCTGAGAGCTGAAAAGCTTGGTCGTATCAAAGGGTTGATAGCCGCGAAGAGGcc                                                                                >  2:113419/1‑148 (MQ=255)                                                            cAGCCGTGAGCAGGCGGTGGAGGCTTCGGCGGTGTCTTGAGCGCCTTTACGTTCCCATGTAGATGCTGTGTTGGCGGTCAAGCTTTTCTGCGGTGCTGAGAGCTGAAAAGCTTGGTCGTATCAAAGGGTTGATAGCCGCGAAGAGGcc                                                                                <  6:129888/148‑1 (MQ=255)                                                             aGCCGTGAGCAGGCGGTGGAGGCTTCGGCGGTGTCTTGAGCGCCTTTACGTTCCCATGTAGATGCTGTGTTGGCGGTCAAGCTTTTCTGCGGTGCTGAGAGCTGAAAAGCTTGGTCGTATCAAAGGGTTGATAGCCGCGAAGAGGCCg                                                                               >  5:169607/1‑148 (MQ=255)                                                                     ggaGGCGGTGGAGGCTGCGGCGGTGTCGTGTGCGCCTTTACGTTCCCTTGTAGTGGCTGTGTTGGCGGTCTAGGTTTTCTGCGGTGCTGAGAGCTGATAAGCTTGGTCGTATCAAAGGGTTGATAGCCGCGAAGAGCCCGGGGCTTCt                                                                       <  4:136207/146‑1 (MQ=255)                                                                     gCAGGCGGTGGAGGCTTCGGCGGTGTCTTGAGCGCCTTTACGGTCCCATGTAGATGCTGGGGTGGCGGGCAAGCTTTTCTGCGGGGCTGAGAGCTGAAAAGCTTGGTCGTAGCAAAGGGTTGATAGCCGCGAAGAGGCCGGGCCTTCt                                                                       <  4:136206/148‑1 (MQ=255)                                                                           ggTGGAGGCTTCGGCGGTGTCTTGAGCGCCTTTACGTTCCCATGTAGATGCTGTGTTGGCGGTCAAGCTTTTCTGCGGTGCTGAGAGCTGAAAAGCTTGGTCGTATCAAAGGGTTGATAGCCGCGAAGAGGCCGGGCCTTCTGGCCaa                                                                 >  8:1789/1‑148 (MQ=255)                                                                           ggTGGAGGCTTCGGCGGTGTCTTGAGCGCCTTTACGTTCCCATGTAGATGCTGTGTTGGCGGTCAAGCTTTTCTGCGGTGCTGAGAGCTGAAAAGCTTGGTCGTATCAAAGGGTTGATAGCCGCGAAGAGGCCGGGCCTTCTGGCCaa                                                                 <  5:9958/148‑1 (MQ=255)                                                                              ggAGGCTTCGGCGGTGGCTTGAGCGCCTTTACTGTCCCATGTAGATGCTGTGTTGGCGGTCAAGCTTTTCTGCGGTGCTGAGAGCTGAAAAGCTTGGTCGTATCAAAGGGTTGATAGCCGCGAAGAGGCCGGGCCTTCTGGCCAAtct                                                              <  7:150240/148‑1 (MQ=255)                                                                                  gCTTCGGCGGTGGCTTGAGCGCCTTTACGTTCCCATGTAGATGCTGTGTTGGCGGTCAAGCTTTTCTGCGGTGCTGAGAGCTGAAAAGCTTGGTCGTATCAAAGGGTTGATAGCCGCGAAGAGGCCGGGCCTTCTGGCCAATCTCCAc                                                          <  8:38164/148‑1 (MQ=255)                                                                                           gtgtCTTGAGCGCCTTTACGTTCCCATGTAGATGCTGTGTTGGCGGTCAAGCTTTTCTGCGGTGCTGAGAGCTGAAAAGCTTGGTCGTATCAAAGGGTTGATAGCCGCGAAGAGGCCGGGCCTTCTGGCCAATCTCCACCCGTCGTTc                                                 <  5:146572/148‑1 (MQ=255)                                                                                                ttGAGCGCCTTTACGTTCCCATGTAGATGCTGTGTTGGCGGTCAAGCTTTTCTGCGGTGCTGAGAGCTGAAAAGCTTGGTCGTATCAAAGGGTTGATAGCCGCGAAGAGGCCGGGCCTTCTGGCCAATCTCCACCCGTCGTTCATCGt                                            >  7:113024/1‑148 (MQ=255)                                                                                                   aGCGCCTTTACGTTCCCATGTAGATGGTGTGTTGGCGGTCAAGCTTTTCTGGGGTTCTGAGAGCTGTAAAGCTTGGTCGTATCAAAGGGTTGATAGCCGCAATTAGGCCTGGCCTTCTGTCCAATCTCCACCCGTCGTTCATCGTTg                                          <  7:84826/147‑1 (MQ=255)                                                                                                   aGCGCCTTTACGTTCCCATGTAGATGCTGTGTTGGCGGTCAAGCTTTTCTGCGGTGCTGAGAGCTGAAAAGCTTGGTCGTATCAAAGGGTTGATAGCCGCAAAGAGGCCGGGCCTTCTGGCCAATCTCCACCCGTCGTTCATCGTTg                                          <  7:84825/147‑1 (MQ=255)                                                                                                   aGCGCCTTTACGTTCCCATGTAGATGCTGTGTTGGCGGTCAAGCTTTTCTGCGGTGCTGAGAGCTGAAAAGCTTGGGCGTATCAAAGGGTTGATAGCCGCGAAGAGGCCGGGCCTTCTGGCCAATCTCCACCCGTCGTTCATCGtt                                           <  1:150993/146‑1 (MQ=255)                                                                                                   aGCGCCTTTACGTTCCCATGTAGATGCTGGGTTGGCGGTCAAGCTTTTCTGCGGTGCTGAGAGCTGAAAAGCTTGGTCGTATCAAAGGGTTGATAGCCGCGAAGAGGCCGGGCCTTCTGGCCAATCTCCACCCGTCGTTCATCGtt                                           <  1:148498/146‑1 (MQ=255)                                                                                                    gcgcCTTTACGTTCCCATGTAGATGCTGTGTTGGCGGTCAAGCTTTTCTGCGGTGCTGAGAGCTGAAAAGCTTGGTCGTATCAAAGGGTTGATAGCCGCGAAGAGGCCGGGCCTTCTGGCCAATCTCCACCCGTCGTTCATCGTTgcc                                        >  3:26433/1‑148 (MQ=255)                                                                                                           tACGTTCCCATGTAGATGCTGTGTTGGCGGTCAAGCTTTTCTGCGGTGCTGAGAGCTGAAAAGCTTGGTCGTATCAAAGGGTTGATAGCCGCGAAGAGGCCGGGCCTTCTGGCCAATCTCCACCCGTCGTTCATCGTTGCCGCCGCCa                                 >  5:44157/1‑148 (MQ=255)                                                                                                                  ccATGTAGATGCTGTGTTGGCGGTCAAGCTTTTCTGCGGTGCTGAGAGCTGAAAAGCTTGGTCGTATCAAAGGGTTGATAGCCGCGAAGAGGCCGGGCCTTCTGGCCAATCTCCACCCGTCGTTCAt                                               >  3:129996/1‑127 (MQ=255)                                                                                                                   cATGTAGATGCTGTGTTGGCGGTCAAGCTTTTCTGCGGTGCTGAGAGCTGAAAAGCTTGGTCGTATCAAAGGGTTGATAGCCGCGAAGAGGCCGGGCCTTCTGGCCAATCTCCACCCGTCGTTCATc                                              <  4:129996/127‑1 (MQ=255)                                                                                                                               gtgtTGGCGGTCAAGCTTTTCTGCGGTGCTGAGAGCTGAAAAGCTTGGTCGTATCAAAGGGGTGCTAGCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCCCCCGTCGTTCCTCGTTGCCGCCGCCCCCGTATTCGCGGGTaccccc             >  6:77604/1‑143 (MQ=37)                                                                                                                                       ggTCAAGCTTTTCTGCGGTGCTGAGAGCTGAAAAGCTTGGTCGTATCAAAGGGTTGATAGCCGCGAAGAGGCCGGGCCTTCTGGCCAATCTCCACCCGTCGTTCATCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTAc     >  1:132964/1‑148 (MQ=255)                                                                                                                                         tCAAGCTTTTCTGCGGTGCTGAGAGCTGAAAAGCTTGGTCGTATCAAAGGGTTGATAGCCGCGAAGAGGCCGGGCCTTCTGGCCAATCTCCACCCGTCGTTCATCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCt   >  1:112730/1‑148 (MQ=255)                                                                                                                                          cAAGCTTTTCTGCGGTGCTGAGAGCTGAAAAGCTTGGTCGTATCAAAGGGTTGATAGCCGCGAAGAGGCCGGGCCTTCTGGCCAATCTCCACCCGTCGTTCATCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCtt  >  4:122295/1‑148 (MQ=255)                                                                                                                                          |                                                                                                                                                    CTGATGCTGTTCCACCAGATACAGCTGATGGTGTGTGCTGTGCTGGCGCAGCGTTATGCCAGCCGTGAGCAGGCGGTGGAGGCTTCGGCGGTGTCTTGAGCGCCTTTACGTTCCCATGTAGATGCTGTGTTGGCGGTCAAGCTTTTCTGCGGTGCTGAGAGCTGAAAAGCTTGGTCGTATCAAAGGGTTGATAGCCGCGAAGAGGCCGGGCCTTCTGGCCAATCTCCACCCGTCGTTCATCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCTT  >  NC_002947/3279130‑3279414

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.