New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3279267 =	37 (1.150)	3 (0.110) +GTCGTATCAAAGGGTTGATAG	3/248	4.1	11.7%	coding (17/183 nt)	PP_2878	hypothetical protein
	?	NC_002947	5756593 =	16 (0.500)					intergenic (+270/‑418)	glnG/PP_5050	two‑component system DNA‑binding response regulator GlnL/GlnG/transposase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGG  >  NC_002947/5756468‑5756735                                                                                                                              |                                                                                                                                               agGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCctgctg                                                                                                                          <  5:73309/148‑1 (MQ=255)              tgGCCAATGTCGAGCTGCCGTTCGCCGTTGCTGCCGCCACCGTATTCGCGGGGACACCCGCGCCTACCACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCAcc                                                                                                             <  1:163847/148‑1 (MQ=17)                          agcTGCCGTTCCCCTGTGCTGCCGGCTCCGTCTTCGGGCGTTATGCCGCGCCGACTTCTGCGGTGGTCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCGAATCTCCACCTGCCGTTCa                                                                                                    <  4:138361/143‑1 (MQ=14)                                  ttCACCGTTGCTGCCGCCCCCGTATTCGCGGGTAAACCCGCGCCTACCCCGGGGGTGGGCGCCTTTCGGGGGCGTCGTAGGCGCGGGTTCCCCCGCGAAGAGGCCGCGCCGGCTGGCCAATCTCCACCTGCCGTTCAGCGTTgccgcc                                                                                         >  7:134419/1‑148 (MQ=17)                                                                     agccGCGCCTTCCACGGCGGTGGTCACATATCGGGGGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCAc                                                      <  6:96943/146‑1 (MQ=255)                                                                     aCCCGCGCCTACCACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCttgtatg                                                        >  1:184048/1‑140 (MQ=255)                                                                      cccGCGCCTACCACGGCGGTGGGCACATATCGGGGTCGTCGTAGGGGCGGGTTAACCCGGGAAGAGGCCGCGCCTGCTGGGCAATCGCCAACGGCCGTTAAACCTTGCCGCCGCCCCCGGATTGGCGGGGGAACCCGCGGCGACCACg                                                     >  4:91292/1‑148 (MQ=255)                                                                       ccGCGCCTACCACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCACgg                                                    >  6:144814/1‑148 (MQ=255)                                                                              gtcctcggcggTGGTCACACATCGGTGGCGGCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTGCAGCGTTGCCGCCGCCACCGTATTCGCGCGTAAACCCGCGCCTACCACGGCTTGGac                                             <  6:49654/143‑1 (MQ=11)                                                                                ccACGGCGGTGGGCACATCTCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCACGGCGTGGacac                                           <  3:91292/148‑1 (MQ=255)                                                                                 cACGGCGGGGGGCACAGATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCACGGCGTGGacac                                           <  5:49867/147‑1 (MQ=255)                                                                                   cggcggTGGGCACAAATCGGGGTCGTCGTACGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCACGGCGTGGAcacaca                                        <  3:109219/148‑1 (MQ=255)                                                                                         tttgCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAATATGCCGCGCCTGCGGCCCAATCTCCACCTGCCGTGCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCACGGCGTGGACACACATCGCgg                                  <  5:72056/145‑1 (MQ=17)                                                                                                                       ggTTCACCCGCGAAGAGGCCGCGACTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCACGGCGTGGACACACATCGCGGTCGGCGTAGGAGCGGGTTCACCCGCGAaga    <  4:154646/148‑1 (MQ=255)                                                                                                                       ggTGCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAaga    <  5:82291/148‑1 (MQ=255)                                                                                                                         tgcACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTCTTCGCGGGTAAACCCGCTCCTACCACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAgg  <  5:82219/146‑1 (MQ=255)                                                                                                                              ccGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTgcc                                                                                            >  2:149042/1‑53 (MQ=35)                                                                                                                              |                                                                                                                                               AGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGG  >  NC_002947/5756468‑5756735

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.