| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5382398 = | 18 (0.560) | 3 (0.120) | 3/220 | 3.7 | 18.9% | intergenic (+18/+115) | smpB/pdhR | SsrA‑binding protein/DNA‑binding transcriptional regulator LldR |
| ? | NC_002947 | 5382496 = | 12 (0.490) | intergenic (+116/+17) | smpB/pdhR | SsrA‑binding protein/DNA‑binding transcriptional regulator LldR | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GGCGCACGAAGAAGCCCAGCGGGTGGCGCGGGCAGAGCGGCGCAGCGGGCGCTGAGGCTTTTATGGGCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5382567‑5382398‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcctgtgggagcgggcttgcccgcgaagaggccggTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGACACCTCCCGCGCATCCTCCGCCCTGCCCTCGA > NC_002947/5382496‑5382640 GGCGCACGAAGAAGCCCAGCGGGGGGCGCGGGCAGAGCGGCGCAGCGGGCGCTGAGGCTTTTATGGGCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCG < 1:62249/148‑1 GCGCACGAAGAAGCCCAGCGGGTGGCGCGGGCAGAGCGGCGCAGCGGGCGCTGAGGCTTTTATGGGCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGG < 6:21647/148‑1 ACGAAGAAGCCCAGCGGGTGGCGCGGGCAGAGCGGCGCAGCGGGCGCTGAGGCTTTTATGGGCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTACCACAGGATAGGCGCCGGGCGTGGATCTGGTGCCCTTGCGGTGGGAGCGGGCTT > 2:33837/1‑148 ACGAAGAAGCCCAGCGGGGGGCGCGGGCAGAGCGGCGCAGCGGGCGCGGAGGCTTTTATGGGCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGGGCCATTCCTGTGGGAGCGGGCTT < 8:42513/148‑1 AGAAGCCCAGCGGGTGGCGCGGGCAGAGCGGCGCAGCGGGCGCTGAGGCTTTTATGGGCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCCCAGGCTAGGCGCCGGGGGTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCC > 3:137088/1‑148 AGAAGCCCAGCGGGTGGCGCGGGCAGAGCGGCGCAGCGGGCGCTGAGGCTTTTATGGGCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCC < 6:58675/148‑1 CCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATG > 8:55956/1‑148 CACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCAT > 6:133678/1‑146 ACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCA > 1:49803/1‑148 TGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGACAC < 3:82077/148‑1 GGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGACACCTCCCGCGCA < 2:149703/148‑1 GCTTGCACGCGAAGAGGCAGGTACTGCCCATAAAACTCTCAGCGCCCGCTCCGCCCCTCTGCCCGCGCCACCCCCAGGGCTTCTTCCTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGCCTGGACACCACCCGCCCAT > 2:17630/1‑148 GCTGGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGACACCTCCCGCGCAT < 2:116692/148‑1 TTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACAGACAAAATGTGCCGGCTGGCCACCTCCCGCGCATCC > 3:36385/1‑148 GCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGACACCTCCCGCGCATCCTCCGCC > 2:34132/1‑148 GCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGACACCTCCCGCGCATCCTCCGCCCTGCCCTC < 5:30749/148‑1 CGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGACACCTCCCGCGCATCCTCCGCCCTGCCCTCGA < 2:22302/148‑1 CGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGACACCTCCCGCGCATCCTCCGCCCTGCCCTCGA < 1:34132/148‑1 GGCGCACGAAGAAGCCCAGCGGGTGGCGCGGGCAGAGCGGCGCAGCGGGCGCTGAGGCTTTTATGGGCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5382567‑5382398‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcctgtgggagcgggcttgcccgcgaagaggccggTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGACACCTCCCGCGCATCCTCCGCCCTGCCCTCGA > NC_002947/5382496‑5382640 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |