| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5382398 = | 18 (0.560) | 3 (0.120) | 3/220 | 3.7 | 18.9% | intergenic (+18/+115) | smpB/pdhR | SsrA‑binding protein/DNA‑binding transcriptional regulator LldR |
| ? | NC_002947 | 5382496 = | 12 (0.490) | intergenic (+116/+17) | smpB/pdhR | SsrA‑binding protein/DNA‑binding transcriptional regulator LldR | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGACACCTCCCGCGCATCCTCCGCCCTGCCCTCGA > NC_002947/5382352‑5382640 | cggtgCGGAACAAGGGCACGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCACGCCCGCGCCCACAGGAAGGGCACCAGATTCAAGCCCGGCGCCTATCCTGGGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACt < 4:141483/146‑1 (MQ=38) gctTCGCGGGCACCCCCGCCCCCCCCGGAAGGCCCCCAGAACCAACCCCGGCGCCTAGCCGGGGGGCGGGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTg < 7:82995/147‑1 (MQ=255) ctTCGGGGCCACCCCCGCGCCCCCAGCATGGGCACCCTATTCACGCCCGGCGCCTAGCGGGGGGGCGCGGGGTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTgg < 5:57649/148‑1 (MQ=255) gggCAAGCCCGCTCCCACAGGAATGGCACCAGATTCACCCCCGGCGCCTAGCCTGGGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGcttct < 3:137088/148‑1 (MQ=255) gggCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGcttct > 6:58675/1‑148 (MQ=255) aaGCCCGCTCCCACCGCAAGGGCACCAGATCCACGCCCGGCGCCTATCCTGTGGTAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGt < 2:33837/148‑1 (MQ=39) aaGCCCGCTCCCACAGGAATGGCCCCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCCGCGCCCGCTGCGCCGCTCTGCCCGCGCCCCCCGCTGGGCTTCTTCGt > 8:42513/1‑148 (MQ=255) ccGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTgcgc > 6:21647/1‑148 (MQ=255) cGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCCCCCGCTGGGCTTCTTCGTGCGcc > 1:62249/1‑148 (MQ=255) aCCAGATTCCAGCCCGGCGCCAATCCTGGGGGCGCGGCCTTCCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCCGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCATGTTCGTGCGCGTCCTGCAGCACCTCCTgg > 1:165107/1‑147 (MQ=255) tATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCt > 3:21678/1‑147 (MQ=255) aTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCGGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCCTGCAGCACCTCCTGCACATACAAAATGTGCCGGCTgg > 8:33129/1‑148 (MQ=255) tgtgGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGacac < 3:82077/148‑1 (MQ=255) ggCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGACACCTCCCGCGCa < 2:149703/148‑1 (MQ=255) gCTTGCACGCGAAGAGGCAGGTACTGCCCATAAAACTCTCAGCGCCCGCTCCGCCCCTCTGCCCGCGCCACCCCCAGGGCTTCTTCCTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGCCTGGACACCACCCGCCCAt > 2:17630/1‑148 (MQ=255) gCTGGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGACACCTCCCGCGCAt < 2:116692/148‑1 (MQ=255) ttGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACAGACAAAATGTGCCGGCTGGCCACCTCCCGCGCAtcc > 3:36385/1‑148 (MQ=255) gcgAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGACACCTCCCGCGCATCCTCCgcc > 2:34132/1‑148 (MQ=255) gCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGACACCTCCCGCGCATCCTCCGCCCTGCCCTc < 5:30749/148‑1 (MQ=255) cGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGACACCTCCCGCGCATCCTCCGCCCTGCCCTCGa < 2:22302/148‑1 (MQ=255) cGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGACACCTCCCGCGCATCCTCCGCCCTGCCCTCGa < 1:34132/148‑1 (MQ=255) | CTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGACACCTCCCGCGCATCCTCCGCCCTGCCCTCGA > NC_002947/5382352‑5382640 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |