New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5382398 =	18 (0.560)	3 (0.120)	3/220	3.7	18.9%	intergenic (+18/+115)	smpB/pdhR	SsrA‑binding protein/DNA‑binding transcriptional regulator LldR
	?	NC_002947	5382496 =	12 (0.490)					intergenic (+116/+17)	smpB/pdhR	SsrA‑binding protein/DNA‑binding transcriptional regulator LldR
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCTGATCAAGTGCGAAATCGCACTGGGCAAGGGCAAGAAGGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACT  >  NC_002947/5382254‑5382499                                                                                                                                                 |                                                                                                      ccTGATCAAGTGCGAAATCGCACTGGGCAAGGGCAAGAAGGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCgg                                                                                                    <  5:127975/148‑1 (MQ=255)  cTGATCAAGTGCGAAATCGCACTGGGCAAGGGCAAGAAGGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGc                                                                                                   >  7:74690/1‑148 (MQ=255)    gATCAAGTGCGAAATCGCACTGGGCAAGGGCAAGAAGGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCCACCTGTTCCGGCct                                                                                                 >  2:136412/1‑148 (MQ=255)      tCAAGTGCGAAATCGCACTGGGCAAGGGCAAGAAGGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCctc                                                                                                <  8:74690/147‑1 (MQ=255)                         gggcaagggcaaGAAGGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCCAGCCCCCTcc                                                                            >  8:5773/1‑148 (MQ=255)                                  caagAAGGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAAt                                                                   <  8:147711/148‑1 (MQ=255)                                  caagAAGCAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAAt                                                                   <  2:2662/148‑1 (MQ=255)                                   aagaagGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATg                                                                  >  4:114250/1‑148 (MQ=255)                                        ggAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCCCACGAATGGCAcc                                                             >  4:82077/1‑148 (MQ=255)                                               gACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCCAGCCCCCGCCCCCAGGACTGGGCCCAGATTCa                                                      >  1:22302/1‑148 (MQ=255)                                               gACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCCCAGGAATGGCACCAGATTCa                                                      >  5:31906/1‑148 (MQ=255)                                               gACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTc                                                       <  7:28993/147‑1 (MQ=255)                                                             cATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCCAGCCCCGGCCCACAGGAAAGGCACCCGGATAAAGCCCGGCGCCGAt                                        >  2:126619/1‑148 (MQ=255)                                                               tGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTACCACAGGGATGGCCCCCGATTCAACGCCGgcggcgagcc                                      >  8:49977/1‑141 (MQ=255)                                                                  gcgAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCtg                                    <  2:169853/147‑1 (MQ=255)                                                                        gcgATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGc                             <  7:73348/148‑1 (MQ=255)                                                                        gcgATGCCAACCGCGAGCTGCCGCGGGCTGGGCGGCCCCCGGGCCAGGCAGAGTAACTACTCTTCAACCTGTTCCGGCCGCTGCGCGGGCAAGCCCGCGCCCACAGGACTGGCCCCAGCTTCAAGCCCGGCGCCTATCCTGTGGGAGc                             <  7:73349/148‑1 (MQ=255)                                                                                                   cggtgCGGAACAAGGGCACGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCACGCCCGCGCCCACAGGAAGGGCACCAGATTCAAGCCCGGCGCCTATCCTGGGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACt  <  4:141483/146‑1 (MQ=38)                                                                                                                                                 |                                                                                                      CCTGATCAAGTGCGAAATCGCACTGGGCAAGGGCAAGAAGGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACT  >  NC_002947/5382254‑5382499

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.