| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 60129 | 54 (1.090) | 4 (0.090) | 4/240 | NT | 7.5% | coding (480/1293 nt) | PP_0051 | sigma‑54 dependent transcriptional regulator |
| ? | NC_002947 | = 60157 | 48 (1.040) | coding (452/1293 nt) | PP_0051 | sigma‑54 dependent transcriptional regulator | |||||
AACGCACCCTTCTCATAGCCGAACAGTTCACTCTCGAACAACGACTCGGTCAGGCCGGTGCAGTCGACCACCACCAGTGGGCCGTTGGCCCTGGGGCTGCCCATGTGCACTGCACGGGCGAACAGCTCCTTGCCGGTCCCCGACTCCCCCTGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/59974‑60129‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgcagcGTGCGGCACCGGCGCAGATCCCGGTGTTGCTGCAGGGGGAGTCGGGGACCGGCAAGGAGCTGTTCGCCCGTGCAGTGCACATGGGCAGCCCCAGGGCCAACGGCCCACTGGTGGTGGTCGACTGCACCGGCCTGACCGAGTCGTTGT < NC_002947/60157‑60011 AACGCACCCTTCTCATAGCCGAACAGTTCACTCTCGAACAACGACTCGGTCAGGCCGGTGCAGTCGACCACCACCAGTGGGCCGTTGGCCCTGGGGCTGCCCATGTGCACTGCACGGGCGAACAGCTCCTTGCCGGTCCCCGACTCCCC < 8:183652/149‑1 GCACGCTTCTCATAGCCTATCAGTTCTCTCTGGAACAACGACTCGGTCAGGACGGTGCAGTCGACCACCACCATTGGGCCGTTGGCCCTGGGGCTGCCCATGTGCACTGGACGGGCGTACAGCTCCTTGCCGGTGCCCGACTCCCCCTG < 6:34467/149‑1 AGGCCGGTGCAGTCGACCACCACCAGTGGGCCGTTGGCCCTGGGGCTGCCCATGTGCACTGCACGGGCGAACAGCTCCTTGCCGGTCCCCGACTCCCCCTGCAGCGTGCGGCACCGGCGCAGATCCCGGTGTTGCTGCAG < 7:103766/140‑1 AGGCCGGTGCAGTCGACCACCACCAGTGGGCCGTTGGCCCTGGGGCTGCCCATGTGCACTGCACGGGCGAACAGCTCCTTGCCGGTCCCCGACTCCCCCTGCAGCGTGCGGCACCGGCGCAGATCCCGGTGTTGCTGCAG > 8:103766/1‑140 CACCAGTGGGCCGTTGGCCCTGGGGCTGCCCATGTGCACTGCACGGGCGAACAGCTCCTTGCCGGTCCCCGACTCCCCCTGCAGCGTGCGGCACCGGCGCAGATCCCGGTGTTGCTGCAGGG < 3:262452/122‑1 CACCAGTGGGCCGTTGGCCCTGGGGCTGCCCATGTGCACTGCACGGGCGAACAGCTCCTTGCCGGTCCCCGACTCCCCCTGCAGCGTGCGGCACCGGCGCAGATCCCGGTGTTGCTGCAGGG > 4:262452/1‑122 CCTGCAGCGTGCGGCACCGGCGGAGATCCCGGTGTTGCTGCAGGGGGAGTCGGGGACCGGCAAGGAGCTGTTCGCCCGTGCAGTGCACATGGGCAGCCCCAGGGCCAACGGCCCACTGGTGGTGGTCGACTGCACCGGCCTGACCGAGT < 8:21040/149‑1 CAGCGTGCGGCACCGGCGCAGATCCCGGTGTTGCTGCAGGGGGAGTCGGGGACCGGCAAGGAGCTGTTCGCCCGTGCAGTGCACATGGGCAGCCCCAGGGCCAACGGCCCACTGGTGGTGGTCGACTGCACCGGCCTGACCGAGTCGTT < 1:251167/149‑1 CAGCGTGCGGCACCGGCGCAGATCCCGGTGTTGCTGCAGGGGGAGTCGGGGACCGGCAAGGAGCTGTTCGCCCGTGCAGTGCACATGGGCAGCCCCAGGGCCAACGGCCCACTGGTGGTGGTCGACTGCACCGGCCTGACCGAGTCG < 6:323738/147‑1 CAGCGTGCGGCACCGGCGAAGATCCCGGTGTTGCTGCAGGTGGAGTCGGTGACCGGCAAGGAGCTGTTCGCCCGTTCAGTGCACATGGGCAGCCCCAGGGCCAACGGCCCACTGGTGTTTGTCGACTGCACCGGCCTGACCGAGTCGTT < 4:58707/149‑1 GCGTGCGGCACCGGCGCAGATCCCGGTGTTGCTGCAGGGGGAGTCGGGGACCGGCAAGGAGCTGTTCGCCCGTGCAGTGCACATGGGCAGCCCCAGGGCCAACGGCCCACTGGTGGTGGTCGACTGCACCGGCCTGACCGAGTCGTTGT < 2:268620/149‑1 AACGCACCCTTCTCATAGCCGAACAGTTCACTCTCGAACAACGACTCGGTCAGGCCGGTGCAGTCGACCACCACCAGTGGGCCGTTGGCCCTGGGGCTGCCCATGTGCACTGCACGGGCGAACAGCTCCTTGCCGGTCCCCGACTCCCCCTGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/59974‑60129‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgcagcGTGCGGCACCGGCGCAGATCCCGGTGTTGCTGCAGGGGGAGTCGGGGACCGGCAAGGAGCTGTTCGCCCGTGCAGTGCACATGGGCAGCCCCAGGGCCAACGGCCCACTGGTGGTGGTCGACTGCACCGGCCTGACCGAGTCGTTGT < NC_002947/60157‑60011 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |