New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 60129	54 (1.090)	4 (0.090)	4/240	NT	7.5%	coding (480/1293 nt)	PP_0051	sigma‑54 dependent transcriptional regulator
	?	NC_002947	= 60157	48 (1.040)					coding (452/1293 nt)	PP_0051	sigma‑54 dependent transcriptional regulator

ACAACGACTCGGTCAGGCCGGTGCAGTCGACCACCACCAGTGGGCCGTTGGCCCTGGGGCTGCCCATGTGCACTGCACGGGCGAACAGCTCCTTGCCGGTCCCCGACTCCCCCTGCAGCAACACCGGGATCTGCGCCGGTGCCGCACGCTGCAGGCTGGCCAGCGCGGCCTTGAAGGTTGGCGCGCGGCCGACCAACCCTTGCTCCTGAGGCTGCGCCGAGGCGAGGGTGATGG‑TGGTGAGGCGTTCGACAAAGGCCACTACCTTGCCCTGCTCATCCAGGATCGGCC  >  NC_002947/60011‑60298                                                                                                                                                   |                                                                                                                                               acaacGACTCGGTCAGGCCGGTGCAGTCGACCACCACCAGTGGGCCGTTGGCCCTGGGGCTGCCCATGTGCACTGCACGGGCGAACAGCTCCTTGCCGGTCCCCGACTCCCCCTGCAGCAACACCGGGATCTGCGCCGGTGCCGCACgc                                                                                                                                              <  2:268620‑M2/149‑3 (MQ=255)   aacGACTCGGTCAGGCCGGTGCAGTCGACCACCACCAGTGGGCCGTTGGCCCTGGGGCTGCCCATGTGCACTGCACGGGCGAACAGCTCCTTGCCGGTCCCCGACTCCCCCTGCAGCAACACCGGGATCTGCGCCGGTGCCGCACgctg                                                                                                                                            <  1:251167‑M2/149‑5 (MQ=255)   aacGACTCGGTCAGGCCGGTGCAGTCGACAAACACCAGTGGGCCGTTGGCCCTGGGGCTGCCCATGTGCACTGAACGGGCGAACAGCTCCTTGCCGGTCACCGACTCCACCTGCAGCAACACCGGGATCTTCGCCGGTGCCGCACgctg                                                                                                                                            <  4:58707‑M2/149‑5 (MQ=255)     cGACTCGGTCAGGCCGGTGCAGTCGACCACCACCAGTGGGCCGTTGGCCCTGGGGCTGCCCATGTGCACTGCACGGGCGAACAGCTCCTTGCCGGTCCCCGACTCCCCCTGCAGCAACACCGGGATCTGCGCCGGTGCCGCACgctg                                                                                                                                            <  6:323738‑M2/147‑5 (MQ=255)       aCTCGGTCAGGCCGGTGCAGTCGACCACCACCAGTGGGCCGTTGGCCCTGGGGCTGCCCATGTGCACTGCACGGGCGAACAGCTCCTTGCCGGTCCCCGACTCCCCCTGCAGCAACACCGGGATCTCCGCCGGTGCCGCACgctgcagg                                                                                                                                        <  8:21040‑M2/149‑9 (MQ=255)         tCGGTCAGGCCGGTGCAGTCGACCACCACCAGTGGGCCGTTGGCCCTGGGGCTGCCCATGTGCACTGCACGGGCGAACAGCTCCTTGCCGGTCCCCGACTCCCCCTGCAGCAACACCGGGATCTGCGCCGGTGCCGCACGCTGCAGGCt                                                                                                                                      >  4:147012/1‑149 (MQ=255)             tCAGGCCGGTGCAGTCGACCACCACCAGTGGGCCGTTGGCCCTGGGGCTGCCCATGTGCACTGCACGGGCGAACAGCTCCTTGCCGGTCCCCGACTCCCCCTGCAGCAACACCGGGATCTGCGCCGGTGCCGCACGCTGCAGGCTGGcc                                                                                                                                  >  5:223898/1‑149 (MQ=255)                      tGCAGTCGACCACCACCAGTGGGCCGTTGGCCCTGGGGCTGCCCATGTGCACTGCACGGGCGAACAGCTCCTTGCCGGTCCCCGACTCCCCCTGCAGCAACACCGGGATCTGCGCCGGTGCCGCACGCTGCAGGCTGGCCAGCGCGGcc                                                                                                                         <  2:13100/149‑1 (MQ=255)                        cAGTCGACCACCACCAGTGGGCCGTTGGCCCTGGGGCTGCCCATGTGCACTGCACGGGCGAACAGCTCCTTGCCGGTCCCCGACTCCCCCTGCAGCAACACCGGGATCTGCGCCGGTGCCGCACGCTGCAGGCTGGCCAGCGCGGCCt                                                                                                                        <  2:245973/148‑1 (MQ=255)                         attCGACCACCACCATTGGGCCGTTGTCCCTGGGGCTGCCCATGTGCACTGCACGGGCGAACAGCTCCTTTCCGTTCCCCGACTCCCACTGCAGCAACACCTGTATCTGCGCAGTTGCCGCACGCTGCAGGCTGGCCAGCGCGGCCtt                                                                                                                       <  3:58707/146‑1 (MQ=255)                          gTCGACCACCACCAGTGGGCCGTTGGCCCTGGGGCTGCCCATGTGCACTGCACGGGCGAACAGCTCCTTGCCGGTCCCCGACTCCCCCTGCAGCAACACCGGGATCTGCGCCGGTGCCGCACGCTGCAGGCTGGCCAGCGCGGCCTTGa                                                                                                                     <  8:125688/149‑1 (MQ=255)                           tCGACCACCACCAGTGGGCCGTTGGCCCTGGGGCTGCCCATGTGCACTGCACGGGCGAACAGCTCCTTGCCGGTCCCCGACTCCCCCTGCAGCAACACCGGGATCTGCGCCGGTGCCGCACGCTGCAGGCTGGCCAGCGCGGCCTTGaa                                                                                                                    <  2:55245/149‑1 (MQ=255)                           gcGACCACCCCCAGTGGGCCGTTGGGCCCGGGGCTGCCCATGTGCACTGCACGGGCGAACAGCTCCTTGCCGGTCCCCGACTCCCCCTGCAGCAACACCGGGATCTGCGCCGGTGCCGCACGCTGCAGGCTGGCCAGCGCGGCCTTGaa                                                                                                                    <  6:231350/148‑1 (MQ=255)                            cGACCACCACCAGTGGGCCGTTGGCCCTGGGGCTGCCCATGTGCACTGCACGGGCGAACAGCTCCTTGCCGGTCCCCGACTCCCCCTGCAGCAACACCGGGATCTGCGCCGGTGCCGCACGCTGCAGGCTGGCCAGCGCGGCCTTGAAg                                                                                                                   <  6:223898/149‑1 (MQ=255)                            cGACCACCACCAGTGGGCCGTTGGCCCTGGGGCTGCCCATGTGCACTGCACGGGCGAACAGCTCCTTGCCGGTCCCCGACTCCCCCTGCAGCAACACCGGGATCTGCGCCGGTGCCGCACGCTGCAGGCTGGCCAGCGCGGCCTTGAAg                                                                                                                   >  5:172739/1‑149 (MQ=255)                               ccaccaccaGTGGGCCGTTGGCCCTGGGGCTGCCCATGTGCACTGCACGGGCGAACAGCTCCTTGCCGGTCCCCGACTCCCCCTGCAGCAACACCGGGATCTGCGCCGGTGCCGCACGCTGCAGGCTGGCCAGCGCGGCCTTGAAGGtt                                                                                                                >  2:88316/1‑149 (MQ=255)                                 accaccaGTGGGCCGTTGGCCCTGGGGCTGCCCATGTGCACTGCACGGGCGAACAGCTCCTTGCCGGTCCCCGACTCCCCCTGCAGCAACACCGGGATCTGCGCCGGTGCCGCACGCTGCAGGCTGGCCAGCGCGGCCTTGAAAGTTgg                                                                                                              >  2:82771/1‑149 (MQ=255)                                  ccaccaGTGGGCCGTTGGCCCTGGGGCTGCCCATGTGCACTGCACGGGCGAACAGCTCCTTGCCGGTCCCCGACTCCCCCTGCAGCAACACCGGGATCTGCGCCGGTGCCGCACGCTGCAGGCTGGCCAGCGCGGCCTTGAAGGTTGgc                                                                                                             >  5:307304/1‑149 (MQ=255)                                  ccaccaGTGGGCCGTTGGCCCTGGGGCTGCCCATGTGCACTGCACGGGCGAACAGCTCCTTGCCGGTCCCCGACTCCCCCTGCAGCAACACCGGGATCTGCGCCGGTGCCGCACGCTGCAGGCTGGCCAGCGCGGCCTTGAAGGTTGgc                                                                                                             >  2:18060/1‑149 (MQ=255)                                        gtcggCCGTGGGCCCTGGGGCTGCCCATGGGCACTGCACGGGCGAACAGCTCCTTGCCGGTCCCCGACTCCCCCTGCAGCAACACCGGGAGCTGCGCCGGTGCCGCACGCTGCAGGCTGGCCAGCGCGGCCTTGAAGGTTGGCGCGCgg                                                                                                       <  3:256011/146‑1 (MQ=255)                                         tGGGCCGTTGGCCCTGGGGCTGCCCATGTGCACTGCACGGGCGAACAGCTCCTTGCCGGTCCCCGACTCCCCCTGCAGCAACACCGGGATCTGCGCCGGTGCCGCACGCTGCAGGCTGGCCAGCGCGGCCTTGAAg                                                                                                                   >  6:214365/1‑136 (MQ=255)                                         tGGGCCGTTGGCCCTGGGGCTGCCCATGTGCACTGCACGGGCGAACAGCTCCTTGCCGGTCCCCGACTCCCCCTGCAGCAACACCGGGATCTGCGCCGGTGCCGCACGCTGCAGGCTGGCCAGCGCGGCCTTGAAg                                                                                                                   <  5:214365/136‑1 (MQ=255)                                            gCCGTTGGCCCTGGGGCTGCCCATGTGCACTGCACGGGCGAACAGCTCCTTGCCGGTCCCCGACTCCCCCTGCAGCAACACCGGGATCTGCGCCGGTGCCGCACGCTGCAGGCTGGCCAGCGCGGCCTTGAAGGTTGGCGCGCGGCCGa                                                                                                   <  8:28925/149‑1 (MQ=255)                                                  ggCCCTGGGGCTGCCCATGTGCACTGCACGGGCGAACAGCTCCTTGCCGGTCCCCGACTCCCCCTGCAGCAACACCGGGATCTGCGCCGGTGCCGCACGCTGCAGGCTGGCCAGCGCGGCCTTGAAGGTTGGCGCGCGGCCGACCAAc                                                                                              <  3:147012/148‑1 (MQ=255)                                                    cccTGGGGCTGCCCATGTGCACTGCACGGGCGAACAGCTCCTTGCCGGTCCCCGACTCCCCCTGCAGCAACACCGGGATCTGCGCCGGTGCCGCACGCTGCAGGCTGGCCAGCGCGGCCTTGAAGGTTGGCGCGCGGCCGACCAAcctt                                                                                           >  8:161157/1‑147 (MQ=255)                                                         gggCTGCCCATGTGCACTGCACGGGCGAACAGCTCCTTGCCGGTCCCCGACTCCCCCTGCAGCAACACCGGGATCTGCGCCGGTGCCGCACGCTGCAGGCTGGCCAGCGCGGCCTTGAAGGTTGGCGCGCGGCCGACCAAccttcaa                                                                                        <  7:161157/147‑6 (MQ=255)                                                          ggCTGCCCATGTGCACTGCACGGGCGAACAGCTCCTTGCCGGTCCCCGACTCCCCCTGCAGCAACACCGGGATCTGCGCCGGTGCCGCACGCTGCAGGCTGGCCAGCGCGGCCTTGAAGGTTGGCGCGCGGCCGACCAACCCTTGCTcc                                                                                     >  6:157507/1‑149 (MQ=255)                                                               cccATGTGCACTGCACGGGCGAACAGCTCCTTGCCGGTCCCCGACTCCCCCTGCAGCAACACCGGGATCTGCGCCGGTGCCGCACGCTGCAGGCTGGCCAGCGCGGCCTTGAAGGTTGGCGCGCGGCCGACCAACCCTTGCTCCTGa                                                                                  <  6:307304/147‑1 (MQ=255)                                                               cccATGTGCACTGCACGGGCGAACAGCTCCTTGCCGGTCCCCGACTCCCCCTGCAGCAACACCGGGATCTGCGCCGGTGCCGCACGCTGCAGGCTGGCCAGCGCGGCCTTGAAGGTTGGCGCGCGGCCGACCAACCCTTGCTCCTGAg                                                                                 <  3:55075/148‑1 (MQ=255)                                                               cccATGTGCACTGCACGGGCGAACAGCTCCTTGCCGGTCCCCGACTCCCCCTGCAGCAACACCGGGATCTGCGCCGGTGCCGCACGCTGCAGGCTGGCCAGCGCGGCCTTGAAGGTTGGCGCGCGGCCGACCAACCCTTGCTCCTGAg                                                                                 >  4:55075/1‑148 (MQ=255)                                                                ccATGTGCACTGCACGGGCGAACAGCTCCTTGCCGGTCCCCGACTCCCCCTGCAGCAACACCGGGATCTGCGCCGGTGCCGCACGCTGCAGGCTGGCCAGCGCGGCCTTGAAGGTTGGCGCGCGGCCGACCAACCCTTGCTCCTGAGGc                                                                               >  6:217092/1‑149 (MQ=255)                                                                     tgcactgcacGGGCGAACAGCTCCTTGCCGGTCCCCGACTCCCCCTGCAGCAACACCGGGATCTGCGCCGGTGCCGCACGCTGCAGGCTGGCCAGCGCGGCCTTGAAGGTTGGCGCGCGGCCGACCAACCCTTGCTCCTGAGGCTgcg                                                                           <  1:88316/148‑1 (MQ=255)                                                                        actgcacGGGCGAACAGCTCCTTGCCGGTCCCCGACTCCCCCTGCAGCAACACCGGGATCTGCGCCGGTGCCGCACGCTGCAGGCTGGCCAGCGCGGCCTTGAAGGTTGGCGCGCGGCCGACCAACCCTTGCTCCTGAGGCTGCGCcga                                                                       <  2:251167/149‑1 (MQ=255)                                                                          tgcacGGGCGAACAGCTCCTTGCCGGTCCCCGACTCCCCCTGCAGCAACACCGGGATCTGCGCCGGTGCCGCACGCTGCAGGCTGGCCAGCGCGGCCTTGAAGGTTGGCGCGCGGCCGACCAACCCTTGCTCCTGAGGCTGCGCcgagg                                                                     >  2:27567/1‑149 (MQ=255)                                                                             acGGGCGAACAGCTCCTTGCCGGTCCCCGACTCCCCCTGCAGCAACACCGGGATCTGCGCCGGTGCCGCACGCTGCAGGCTGGCCAGCGCGGCCTTGAAGGTTGGCGCGCGGCCGACCAACCCTTGCTCCTGAGGCTGCGCcgaggcga                                                                  <  5:323738/149‑1 (MQ=255)                                                                             acGGGCGAACAGCTCCTTGCCGGTCCCCGACTCCCCCTGCAGCAACACCGGGATCTGCGCCGGTGCCGCACGCTGCAGGCTGGCCAGCGCGGCCTTGAAGGTTGGCGCGCGGCCGACCAACCCTTGCTCCTGAGGCTGCGCcgaggcga                                                                  <  5:217092/149‑1 (MQ=255)                                                                                   gAACAGCTCCTTGCCGGTCCCCGACTCCCCCTGCAGCAACACCGGGATCTGCGCCGGTGCCGCACGCTGCAGGCTGGCCAGCGCGGCCTTGAAGGTTGGCGCGCGGCCGACCAACCCTTGCTCCTGAGGCTGCGCCGAGGCGAGGGTGa                                                            <  1:27567/149‑1 (MQ=255)                                                                                      cAGCTCCTTGCCGGTCCCCGACTCCCCCTGCAGCAACACCGGGATCTGCGCCGGTGCCGCACGCTGCAGGCTGGCCAGCGCGGCCTTGAAGGTTGGCGCGCGGCCGACCAACCCTTGCTCCTGAGGCTGCGCCGAGGCGAGGGTGAtgg                                                         >  7:27160/1‑149 (MQ=255)                                                                                        gCTCCTTGCCGGTCCCCGACTCCCCCTGCAGCAACACCGGGATCTGCGCCGGTGCCGCACGCTGCAGGCTGGCCAGCGCGGCCTTGAAGGTTGGCGCGCGGCCGACCAACCCTTGCTCCTGAGGCTGCGCCGAGGCGAGGGTGAtgg‑tg                                                      <  5:157507/149‑1 (MQ=255)                                                                                          tCCTTGCCGGTCCCCGACTCCCCCTGCAGCAACACCGGGATCTGCGCCGGTGCCGCACGCTGCAGGCTGGCCAGCGCGGCCTTGAAGGTTGGCGCGCGGCCGACCAACCCTTGCTCCTGAGGCTGCGCCGAGGCGAGGGTGATgg‑tggt                                                    >  5:212261/1‑149 (MQ=255)                                                                                                  ggTCCCCGACTCCCCCTGCAGCAACACCGGGATCTGCGCCGGTGCCGCACGCTGCAGGCTGGCCAGCGCGGCCTTGAAGGTTGGCGCGCGGCCGACCAACCTTTGCTCCTGAGGCTGCGCCGAGGCGAGGGTGATGG‑TGGTGAGGCGtt                                            <  1:268620/149‑1 (MQ=255)                                                                                                         gACTCCCCCTGCAGCAACACCGGGATCTGCGCCGGTGCCGCACGCTGCAGGCTGGCCAGCGCGGCCTTGAAGGTTGGCGGGCGGCCGACCAACCCTTGCTCCTGAGGCTGCGCCGAGGCGAGGGTGATGG‑TGGTGAGGCGTTCGACaaa                                     <  7:21040/149‑1 (MQ=255)                                                                                                            tCCCCCTGCAGCAACACCGGGATCTGCGCCGGTGCCGCACGCTGCAGGCTGGCCAGCGCGGCCTTGAAGGTTGGCGCGCGGCCGACCAACCCTTGCTCCTGAGGCTGCGCCGAGGCGAGGGTGATGG‑TGGTGAGGCGTTCGACAAAGGc                                  >  5:266454/1‑149 (MQ=255)                                                                                                               cccTGCAGCAACACCGGGATCTGCGCCGGTGCCGCACgctgcagggggagtcggggaccggcaaggagctgttcgcccgtgcagtgcacatgggcagccccagggccaacggcccactggtg                                                           >  4:262452‑M2/1‑37 (MQ=255)                                                                                                               cccTGCAGCAACACCGGGATCTGCGCCGGTGCCGCACgctgcagggggagtcggggaccggcaaggagctgttcgcccgtgcagtgcacatgggcagccccagggccaacggcccactggtg                                                           <  3:262452‑M2/122‑86 (MQ=255)                                                                                                               cccTGCAGCAACACCGGGATCTGCGCCGGTGCCGCACGCTGCAGGCTGGCCAGCGCGGCCTTGAAGGTTGGCGCGCGGCCGACCAACCCTTGCTCCTGAGGCTGCGCCGAGGCGAGGGTGATGG‑TGGTGAGGCGTTCGACAAAGGCCAc                               <  6:212261/149‑1 (MQ=255)                                                                                                                ccTGCAGCAACACCGGGATCTGCGCCGGTGCCGCACGCTGCAGGCTGGCCAGCGCGGCCTTGAAGGTTGGCGCGCGGCCGACCAACCCTTGCTCCTGAGGCTGCGCCGAGGCGAGGGTGATGG‑TGGTGAGGCGTTCGACAAAGGCCAc                               >  7:280866/1‑148 (MQ=255)                                                                                                                 cTGCAGCAACACCGGGATCTGCGCCGGTGCCGCACgctgcagggggagtcggggaccggcaaggagctgttcgcccgtgcagtgcacatgggcagccccagggccaacggcccactggtggtggtcgactgcaccggcct                                       <  7:103766‑M2/140‑106 (MQ=255)                                                                                                                 cTGCAGCAACACCGGGATCTGCGCCGGTGCCGCACgctgcagggggagtcggggaccggcaaggagctgttcgcccgtgcagtgcacatgggcagccccagggccaacggcccactggtggtggtcgactgcaccggcct                                       >  8:103766‑M2/1‑35 (MQ=255)                                                                                                                     agcaACACCGGGATCTGCGCCGGTGCCGCACGCTGCAGGCTGGCCAGCGCGGCCTTGAAGGTTGGCGCGCGGCCGACCAACCCTTGCTCCTGAGGCTGCGCCGAGGCGAGGGTGATGG‑TGGTGAGGCGTTCGACAAAGGCCACTACCtt                         >  3:294003/1‑149 (MQ=255)                                                                                                                             cGGGATCTGCGCCGGTGCCGCACGCTGCAGGCTGGCCAGCGCGGCCTTGAAGGTTGGCGCGCGGCCGACCAACCCTTGCTc                                                                                      >  6:1817/1‑81 (MQ=255)                                                                                                                             cGGGATCTGCGCCGGTGCCGCACGCTGCAGGCTGGCCAGCGCGGCCTTGAAGGTTGGCGCGCGGCCGACCAACCCTTGCTc                                                                                      <  5:1817/81‑1 (MQ=255)                                                                                                                                gATCTGCGCCGGTGCCGCACGCTGCAGGCTGGCCAGCGCGGCCTTGAAGGTTGGCGCGCGGCCGACCAACCCTTGCTCCTGAGGCTGCGCCGAGGCGAGGGTGATGG‑TGGTGAGGCGTTCGACAAAGGCCACTACCTTGCCCTGCTCAt              <  6:266454/149‑1 (MQ=255)                                                                                                                                     gcgcCGGTGCCGCACGCTGCAGGCTGGCCAGCGCGGCCTTGAAGGTTGGCGCGCGGCCGACCAACCCTTGCTCCTGAGGCTGCGCcgagg                                                                     <  7:355/90‑1 (MQ=255)                                                                                                                                     gcgcCGGTGCCGCACGCTGCAGGCTGGCCAGCGCGGCCTTGAAGGTTGGCGCGCGGCCGACCAACCCTTGCTCCTGAGGCTGCGCcgagg                                                                     >  8:355/1‑90 (MQ=255)                                                                                                                                      cgcCGGTGCCGCACGCTGCAGGCTGGCCAGCGCGGCCTTGAAGGTTGGCGCGCGGCCGACCAACCCTTGCTCCTGAGGCTGCGCCGAGGCGAGGGTGATGG‑TGGTGAGGCGTTCGACAAAGGCCACTACCTTGCCCTGCTCATc             <  3:142534/144‑1 (MQ=255)                                                                                                                                        ccGGTGCCGCACGCTGCAGGCTGGCCAGCGCGGCCTTGAAGGTTGGCGCGCGGCCGACCAACCCTTGCTCCTGAGGCTGCGCCGAGGCGAGGGTGATGG‑TGGTGAGGCGTTCGACAAAGGCCACTACCTTGCCCTGCTCATCCAGGATc      <  8:27160/149‑1 (MQ=255)                                                                                                                                              ccGCACGCTGCAGGCTGGCCAGCGCGGCCTTGAAAGTTGGCGCGCGGCCGACCAACCCTTGCTCCTGAGGCTGCGCCGAGGCGAGGGTGATGGTTGGTGAGGCGTTCGACAAAGGCCACTACCTTGCCCTGCTCATCCAGGATCGGcc  <  1:82771/148‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                               ACAACGACTCGGTCAGGCCGGTGCAGTCGACCACCACCAGTGGGCCGTTGGCCCTGGGGCTGCCCATGTGCACTGCACGGGCGAACAGCTCCTTGCCGGTCCCCGACTCCCCCTGCAGCAACACCGGGATCTGCGCCGGTGCCGCACGCTGCAGGCTGGCCAGCGCGGCCTTGAAGGTTGGCGCGCGGCCGACCAACCCTTGCTCCTGAGGCTGCGCCGAGGCGAGGGTGATGG‑TGGTGAGGCGTTCGACAAAGGCCACTACCTTGCCCTGCTCATCCAGGATCGGCC  >  NC_002947/60011‑60298

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.