New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 279658	42 (0.850)	3 (0.060)	3/246	NT	6.4%	coding (591/669 nt)	sctS	sulfur compound ABC transporter permease
	?	NC_002947	= 279717	47 (0.990)					coding (532/669 nt)	sctS	sulfur compound ABC transporter permease

CACGGTCAGGTCGATACCGTTGAGCACGGTCTGGCCCTTGAACCGCTTGGTCAGGCCTTTGACTTCAATCATGCTCAATGCTCCTGGTCATGCTGGTTGACCCGCGCTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/279506‑279658 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccagCTGATTACCGCGCGCACGTTCGAAGTGTTCACCATGTACGTGGCGGTCGCGGTCATCTACTGGGTGCTGTGCAGCATCCTTGCGCACTTCCAGAACCGCATGGAAGCGCGGGTCAACCAGCATGACCAGGAGCATTGAGCATGATT  <  NC_002947/279717‑279572                                                                                                                                                                                                                                                                                                             CACGGTCAGGTCGATACCGTTGAGCACGGTCTGGCCCTTGAACCGCTTGGTCAGGCCTTTGACTTCAATCATGCTCAATGCTCCTGGTCATGCTGGTTGACCCGCGCTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCAC                                                                                                                                                        >  1:16818/1‑149        AGGTCGATACCGTTGAGCACGGTCTGGCCCTTGAACCGCTTGGTCAGGCCTTTGACTTCAATCATGCTCAATGCTCCTGGTCATGCTGGTTGACCCGCGCTTCCATGCGGTTCTGGAAGTGAGCAAGGATGATGCACAGCACCCAG                                                                                                                                                    >  2:312055/1‑146              ATACCGTTGAGCACGGTCTGGCCCTTGAACCGCTTGGTCAGGCCTTTGACTTCAATCATGCTCAATGCTCCTGGTCATGCTGGTTGACCCGCGCTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCC                                                                                                                                                      >  3:207844/1‑138              ATACCGTTGAGCACGGTCTGGCCCTTGAACCGCTTGGTCAGGCCTTTGACTTCAATCATGCTCAATGCTCCTGGTCATGCTGGTTGACCCGCGCTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCC                                                                                                                                                      <  4:207844/138‑1                                    CCTTGAACCGCTTGGTCAGGCCTTTGACTTCAATCATGCTCAATGCTCCTGGTCATGCTGGTTGACCCGCGCTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGCTGATTACCGCGCGCACGTTCGAAGTGTTCA                                                                                                                     >  1:307256/1‑149                                                                TTCAATCATGCTCAATGCTCCTGGTCATGCTGGTTGACCCGCGCTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGCTGATTACCGCGCGCACGTTCGAAGTGTTCACCATGTACGTGGCGGTCGCGGTCATCTA                                                                                         >  7:99728/1‑149                                                                    ATCATGCTCAATGCTCCTGGTCATGCTGGTTGACCCGCGCTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGCTGATTACCGCGCGCACGTTCGAAGTGTTCACCATGTACGTGGCGGTCGCGGTCATCTACTGG                                                                                     <  2:307256/149‑1                                                                                                                                                     CCCAGCTGATTACCGCGCGCACGTTCGAAGTGTTCACCATGTACGTGGCGGTCGCGGTCATCTACTGGGTGCTGTGCAGCATCCTTGCGCACTTCCAGAACCGCATGGAAGCGCGGGTCAACCAGCATGACCAGGAGCATTGAGCATGA    >  5:56580/1‑149                                                                                                                                                       CAGCTGATTACCGCGCGCACGTTCGAAGTGTTCACCATGTACGTGGCGGTCGCGGTCATCTACTGGGTGCTGTGCAGCATCCTTGCGCACTTCCAGAACCGCATGGAAGCGCGGGTCAACCAGCATGACCAGGAGCATTGAGCATGATT  <  5:100685/149‑1                                                                                                                                                        AGCTGATTACCGCGCGCACGTTCGAAGTGTTCACCATGTACGTGGCGGTCGCGGTCATCTACTGGGTGCTGTGCAGCATCCTTGCGCACTTCCAGAACCGCATGGAAGCGCGGGTCAACCAGCATGACCAGGAGCATTGAGCATGATT  >  2:301313/1‑148                                                                                                                                                                                                                                                                                                             CACGGTCAGGTCGATACCGTTGAGCACGGTCTGGCCCTTGAACCGCTTGGTCAGGCCTTTGACTTCAATCATGCTCAATGCTCCTGGTCATGCTGGTTGACCCGCGCTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/279506‑279658 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccagCTGATTACCGCGCGCACGTTCGAAGTGTTCACCATGTACGTGGCGGTCGCGGTCATCTACTGGGTGCTGTGCAGCATCCTTGCGCACTTCCAGAACCGCATGGAAGCGCGGGTCAACCAGCATGACCAGGAGCATTGAGCATGATT  <  NC_002947/279717‑279572

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.