New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 279658	42 (0.850)	3 (0.060)	3/246	NT	6.4%	coding (591/669 nt)	sctS	sulfur compound ABC transporter permease
	?	NC_002947	= 279717	47 (0.990)					coding (532/669 nt)	sctS	sulfur compound ABC transporter permease

TTCAATCATGCTCAATGCTCCTGGTCATGCTGGTTGACCCGCGCTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCTTTACCAGCGAGATGAAGCTGTTGCCCAGCGGTGGCAACGCGGTGCGCAAGGCCTGTGGCAGGATCGCCCGGCGCATGGCTTGCACGCGG  >  NC_002947/279569‑279862                                                                                                                                                     |                                                                                                                                                  ttCAATCATGCTCAATGCTCCTGGTCATGCTGGTTGACCCGCGCTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAg                                                                                                                                                   >  2:57281/1‑149 (MQ=255)    aaTCATGCTCAATGCTCCTGGTCATGCTGGTTGACCCGCGCTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGctg                                                                                                                                                <  5:100685‑M2/149‑4 (MQ=255)    aaTCATGCTCAATGCTCCTGGTCATGCTGGTTGACCCGCGCTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGct                                                                                                                                                 >  2:301313‑M2/1‑146 (MQ=255)      tCATGCTCAATGCTCCTGGTCATGCTGGTTGACCCGCGCTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGctggg                                                                                                                                              >  5:56580‑M2/1‑144 (MQ=255)         tGCTCAATGCTCCTGGTCATGCTGGTTGACCCGCGCTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCt                                                                                                                                            <  4:124520/148‑1 (MQ=255)         tGCTCAATGCTCCTGGTCATGCTGGTTGACCCGCGCTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCt                                                                                                                                            >  3:124520/1‑148 (MQ=255)              aaTGCTCCTGGTCATGCTGGTTGACCCGCGCTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGAACGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCg                                                                                                                                       >  1:260851/1‑148 (MQ=255)                   tCCTGGTCATGCTGGTTGACCCGCGCTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAg                                                                                                                                 >  6:181371/1‑149 (MQ=255)                     cTGGTCATGCTGGTTGACCCGCGCTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCt                                                                                                                               >  5:67549/1‑149 (MQ=255)                                 gTTGACCCGCGCTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGa                                                                                                                   >  1:247623/1‑149 (MQ=255)                                      cccGCGCTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTc                                                                                                              <  7:108540/149‑1 (MQ=255)                                       ccGCGCTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTcg                                                                                                             >  6:231675/1‑149 (MQ=255)                                           gcTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTcgccgc                                                                                                         >  2:32494/1‑149 (MQ=255)                                                       ttCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTc                                                                                             <  2:247623/149‑1 (MQ=255)                                                          tGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGTGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCtt                                                                                          >  3:210682/1‑149 (MQ=255)                                                          tGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCtt                                                                                          >  6:121461/1‑149 (MQ=255)                                                          tGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCtt                                                                                          >  6:126307/1‑149 (MQ=255)                                                            gAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCtt                                                                                          <  1:312055/147‑1 (MQ=255)                                                                   gcAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCTTTACCAGCga                                                                                 <  2:260851/149‑1 (MQ=255)                                                                     aaGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCTTTACCAGc                                                                                   >  8:183707/1‑145 (MQ=255)                                                                        gATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCTTTACCAGCGAGATGa                                                                            <  2:61592/149‑1 (MQ=255)                                                                            ctgcACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCTTTACCAGCGAGATGAAGCt                                                                        >  5:72353/1‑149 (MQ=255)                                                                             tgcACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCTTTACCAGCGAGATGAAGCTg                                                                       >  3:188758/1‑149 (MQ=255)                                                                               cacaGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCTTTACCAGCGAGATGAAGCTGtt                                                                     <  1:57281/149‑1 (MQ=255)                                                                                 caGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCTTTACCAGCGAGATGAAGCTGTTGc                                                                   <  5:181371/149‑1 (MQ=255)                                                                                     aCCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCTTTACCAGCGAGATGAAGCTGTTGCCCAg                                                               >  6:53464/1‑149 (MQ=255)                                                                                       ccAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGctgggtgctgtgcagcatccttgcgcacttccagaaccgcatggaagcgcgggtcaaccagcatgaccaggagcattgagcatgat                                                             <  2:307256‑M2/149‑87 (MQ=255)                                                                                       ccAGTAGATGACAGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCTTTACCAGCGAGATGAAGCTGTTGCCCAGCg                                                             >  7:24278/1‑149 (MQ=255)                                                                                         aGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCTTTACCAGCGAGATGAAGATGTTGCCCAGAGGt                                                           >  8:43770/1‑149 (MQ=255)                                                                                           tAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGctgggtgctgtgcagcatccttgcgcacttccagaaccgcatggaagcgcgggtcaaccagcatgaccaggagcattgagcatgattgaa                                                         >  7:99728‑M2/1‑59 (MQ=255)                                                                                           tAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCTTTACCAGCGAGATGAAGCTGTTGCCCAGCGGTgg                                                         <  6:67549/149‑1 (MQ=255)                                                                                             gATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCTTTACCAGCGAGATGAAGCTGTTGCCCAGCGGTGGc                                                        <  5:180925/148‑1 (MQ=255)                                                                                             gATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCTTTACCAGCGAGATGAAGCTGTTGCCCAGCGGTGGCa                                                       >  8:237374/1‑149 (MQ=255)                                                                                             gATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCTTTACCAGCGAGATGAAGCTGTTGCCCAGCGGTGGCa                                                       <  4:188758/149‑1 (MQ=255)                                                                                               tGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCTTTACCAGCGAGATGAAGCTGTTGCCCAGCGGTGGCAAc                                                     <  6:100685/149‑1 (MQ=255)                                                                                               tGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCTTTACCAGCGAGATGAAGCTGTTGCCCAGCGGTGGCAAc                                                     <  7:87426/149‑1 (MQ=255)                                                                                                      gaccgcCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCTTTACCAGCGAGATGAAGCTGTTGCCCAGCGGTGGCAACGCGGTgc                                              <  5:126307/149‑1 (MQ=255)                                                                                                      gaccgcCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCTTTACCAGCGAGATGAAGCTGTTGCCCAGCGGTGGCAACGCGGTgc                                              >  8:84724/1‑149 (MQ=255)                                                                                                      gaccgcCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCTTTACCAGCGAGATGAAGCTGTTGCCCAGCGGTGGCAACGCGGTgc                                              <  8:24278/149‑1 (MQ=255)                                                                                                      gaccgcCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCTTTACCAGCGAGATGAAGCTGTTGCCCAGCGGTGGCAACGCGGTgc                                              <  5:121461/149‑1 (MQ=255)                                                                                                            cACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCTTTACCAGCGAGATGAAGCTGTTGCCCAGCGGTGGCAACGCGGTGCGCAAgg                                        >  5:9928/1‑149 (MQ=255)                                                                                                                 aCATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCTTTACCAGCGAGATGAAGCTGTTGCCCAGCGGTGGCAACGCGGTGCGCAAGGCCtgt                                   >  3:67119/1‑149 (MQ=255)                                                                                                                  cATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGTGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCTTTACCAGCGAGATGAAGCTGTTGCCCAGCGGTGGCAACGCGGTGCGCAAGGCCtgt                                   <  4:210682/148‑1 (MQ=255)                                                                                                                  cATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCTTTACCAGCGAGATGAAGCTGTTGCCCAGCGGTGGCAACGCGGTGCGCAAGGCCtgt                                   <  7:237374/148‑1 (MQ=255)                                                                                                                    tGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCTTTACCAGCGAGATGAAGCTGTTGCCCAGCGGTGGCAACGCGGTGCGCAAGGCCTGTGGc                                <  7:183707/149‑1 (MQ=255)                                                                                                                      gTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCTTTACCAGCGAGATGAAGCTGTTGCCCAGCGGTGGCAACGCGGTGCGCAAGGCCTGTGGCAg                              <  4:67119/149‑1 (MQ=255)                                                                                                                       tGAACACTTCGAACGTGCGCGCGGTAATCAGctgggtgctgtgcagcatccttgcgcacttccagaaccgcatggaagcgcgggtcaaccagcatgaccaggagcattgagcatgattgaagtcaaaggcctgaccaagcggttcaagg                             >  1:307256‑M2/1‑31 (MQ=255)                                                                                                                         aaCACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCTTTACCAGCGAGATGAAGCTGTTGCCCAGCGGTGGCAACGCGGTGCGCAAGGCCTGTGGCAGGa                            <  6:72353/148‑1 (MQ=255)                                                                                                                             cTTCGAACGTGTGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCTTTACCAGCGAGATGAAGCTGTTGCCCAGCGGTGGCAACGCGGt                                                <  4:299763/124‑1 (MQ=255)                                                                                                                             cTTCGAACGTGTGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCTTTACCAGCGAGATGAAGCTGTTGCCCAGCGGTGGCAACGCGGt                                                >  3:299763/1‑124 (MQ=255)                                                                                                                              ttCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCTTTACCAGCGAGATGAAGCTGTTGCCCAGCGGTGGCAACGCGGTGCGCAAGGCCTGTGGCAGGATCGccc                      >  4:67803/1‑149 (MQ=255)                                                                                                                              ttCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCTTTACCAGCGAGATGAAGCTGTTGCCCAGCGGTGGCAACGCGGTGCGCAAGGCCTGTGGCAGGATCGccc                      >  2:133501/1‑149 (MQ=255)                                                                                                                                    cGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCTTTACCAGCGAGATGAAGCTGTTGCCCAGCGGTGGCAACGCGGTGCGCAAGGCCTGTGGCAGGATCGCCCGGCGCa                <  7:84724/149‑1 (MQ=255)                                                                                                                                        cgcgcgGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGGCGCCGCCAGGGCGGTGTCCTTTACCAGCGAGATGAAGCTGTTGCCCAGCGGTGGCAACGCGGTGCGCAAGGCCTGTGGCAGGATCGCCCGGCGCATGGc            <  3:64773/149‑1 (MQ=255)                                                                                                                                             ggTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGc                                                                                                   <  7:294495/57‑1 (MQ=255)                                                                                                                                             ggTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGc                                                                                                   >  8:294495/1‑57 (MQ=255)                                                                                                                                                  tCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCTTTACCAGCGAGATGAAGCTGTTGCCCAGCGGTGGCAACGCGGTGCGCAAGGCCTGTGGCAGGATCGCCCGGCGCATGGCTTGCACGCgg  <  5:53464/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                  TTCAATCATGCTCAATGCTCCTGGTCATGCTGGTTGACCCGCGCTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCTTTACCAGCGAGATGAAGCTGTTGCCCAGCGGTGGCAACGCGGTGCGCAAGGCCTGTGGCAGGATCGCCCGGCGCATGGCTTGCACGCGG  >  NC_002947/279569‑279862

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.