New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 279658	42 (0.850)	3 (0.060)	3/246	NT	6.4%	coding (591/669 nt)	sctS	sulfur compound ABC transporter permease
	?	NC_002947	= 279717	47 (0.990)					coding (532/669 nt)	sctS	sulfur compound ABC transporter permease

AGGTCGATACCGTTGAGCACGGTCTGGCCCTTGAACCGCTTGGTCAGGCCTTTGACTTCAATCATGCTCAATGCTCCTGGTCATGCTGGTTGACCCGCG‑CTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCTTTACCAGCGAGATGAAGCTGTTGCCCAGCGGT  >  NC_002947/279513‑279805                                                                                                                                                   |                                                                                                                                                    aGGTCGATACCGTTGATCACGGTCTGGCCCTTGAACCGCGTGGTCAGGCCTTTGACTTCAATCATGCTCAATGCTCCTGGTCATGCTGGTTGACCCGCG‑CTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTa                                                                                                                                                   <  5:255798/148‑1 (MQ=255) aGGTCGATACCGTTGAGCACGGTCTGGCCCTTGAACCGCTTGGTCAGGCCTTTGACTTCAATCATGCTCAATGCTCCTGGTCATGCTGGTTGACCCGCG‑CTTCCATGCGGTTCTGGAAGTGAGCAAGGATGATGCACAGCACCCAG                                                                                                                                                     >  2:312055‑M1/1‑146 (MQ=255)                aGCACGGTCTGGCCCTTGAACCGCTTGGTCAGGCCTTTGACTTCAATCATGCTCAATGCTCCTGGTCATGCTGGTTGACCCGCG‑CTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATgaccgcgaccgc                                                                                                                                    <  5:132100/148‑1 (MQ=255)                 gCACGGTCTGGCCCTTGAACCGCTTGGTCAGGCCTTTGACTTCAATCATGCTCAATGCTCCTGGTCATGCTGGTTGACCCGCG‑CTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCa                                                                                                                                  >  6:323969/1‑149 (MQ=255)                      gTCTGGCCCTTGAACCGCTTGGTCAGGCCTTTGACTTCAATCATGCTCAATGCTCCTGGTCATGCTGGTTGACCCGCG‑CTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGcc                                                                                                                                   >  6:37307/1‑143 (MQ=255)                      gTCTGGCCCTTGAACCGCTTGGTCAGGCCTTTGACTTCAATCATGCTCAATGCTCCTGGTCATGCTGGTTGACCCGCG‑CTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGcc                                                                                                                                   <  5:37307/143‑1 (MQ=255)                      gTCTGGCCCTTGAACCGCTTGGTCAGGCCTTTGACTTCAATCATGCTCAATGCTCCTGGTCATGCTGGTTGACCCGCG‑CTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTAc                                                                                                                             <  3:134678/149‑1 (MQ=255)                           gCCCTTGAACCGCTTGGTCAGGCCTTTGACTTCAATCATGCTCAATGCTCCTGGTCATGCTGGTTGACCCGCG‑CTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATg                                                                                                                          <  5:323969/147‑1 (MQ=255)                            cccTTGAACCGCTTGGTCAGGCCTTTGACTTCAATCATGCTCAATGCTCCTGGTCATGCTGGTTGACCCGCG‑CTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTg                                                                                                                       <  2:16818/149‑1 (MQ=255)                            cccTTGAACCGCTTGGTCAGGCCTTTGACTTCAATCATGCTCAATGCTCCTGGTCATGCTGGGTGACCCGCG‑CTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGt                                                                                                                        >  5:221999/1‑148 (MQ=255)                             ccTTGAACCGCTTGGTCAGGCCTTTGACTTCAATCATGCTCAATGCTCCTGGTCATGCTGGTTGACCCGCG‑CTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGctgattaccgcgcgcacgttcgaagtgttca                                                                                                                      >  1:307256‑M1/1‑118 (MQ=255)                                 gAACCGCTTGGTCAGGCCTTTGACTTCAATCATGCTCAATGCTCCTGGTCATGCTGGTTGACCCGCG‑CTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAac                                                                                                                    <  4:171119/147‑1 (MQ=255)                                      gCTTGGTCAGGCCTTTGACTTCAATCATGCTCAATGCTCCTGGTCATGCTGGTTGACCCGCG‑CTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCg                                                                                                              >  6:56580/1‑148 (MQ=255)                                            tCAGGCCTTTGACTTCAATCATGCTCAATGCTCCTGGTCATGCTGGTTGACCCGCG‑CTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTgc                                                                                                       >  1:312414/1‑149 (MQ=255)                                                 ccTTTGACTTCAATCATGCTCAATGCTCCTGCGCATGCTGGTAGACCCGCG‑CTTCCAAGCGGTTCTGGAAGTGCTCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGcgcgcg                                                                                                  <  5:213981/149‑1 (MQ=255)                                                  cTTTGACTTCAATCATGCTCAATGCTCCTGGTCATGCTGGTTGACCCGCG‑CTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCgg                                                                                                 <  2:312414/149‑1 (MQ=255)                                                      gACTTCAATCATGCTCAATGCTCCTGGTCATGCTGGTTGACCCGCG‑CTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAAt                                                                                             >  8:108540/1‑149 (MQ=255)                                                         ttCAATCATGCTCAATGCTCCTGGTCATGCTGGTTGACCCGCGACTTCCATGCGGTTATGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAAt                                                                                             >  1:61592/1‑147 (MQ=255)                                                         ttCAATCATGCTCAATGCTCCTGGTCATGCTGGTTGACCCGCG‑CTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGctgattaccgcgcgcacgttcgaagtgttcaccatgtacgtggcggtcgcggtcatcta                                                                                          >  7:99728‑M1/1‑90 (MQ=255)                                                         ttCAATCATGCTCAATGCTCCTGGTCATGCTGGTTGACCCGCG‑CTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGt                                                                                                                        >  5:221847/1‑119 (MQ=255)                                                         ttCAATCATGCTCAATGCTCCTGGTCATGCTGGTTGACCCGCG‑CTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGt                                                                                                                        <  6:221847/119‑1 (MQ=255)                                                         ttCAATCATGCTCAATGCTCCTGGTCATGCTGGTTGACCCGCG‑CTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAg                                                                                          >  2:57281/1‑149 (MQ=255)                                                            aaTCATGCTCAATGCTCCTGGTCATGCTGGTTGACCCGCG‑CTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAAc                                                                                                           <  5:34471/129‑1 (MQ=255)                                                            aaTCATGCTCAATGCTCCTGGTCATGCTGGTTGACCCGCG‑CTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAAc                                                                                                           >  6:34471/1‑129 (MQ=255)                                                            aaTCATGCTCAATGCTCCTGGTCATGCTGGTTGACCCGCG‑CTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGctg                                                                                       <  5:100685‑M2/149‑4 (MQ=255)                                                            aaTCATGCTCAATGCTCCTGGTCATGCTGGTTGACCCGCG‑CTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGct                                                                                        >  2:301313‑M2/1‑146 (MQ=255)                                                             aTCATGCTCAATGCTCCTGGTCATGCTGGTTGACCCGCG‑CTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGctgattaccgcgcgcacgttcgaagtgttcaccatgtacgtggcggtcgcggtcatctactgg                                                                                      <  2:307256‑M1/149‑64 (MQ=255)                                                              tCATGCTCAATGCTCCTGGTCATGCTGGTTGACCCGCG‑CTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGctggg                                                                                     >  5:56580‑M2/1‑144 (MQ=255)                                                                 tGCTCAATGCTCCTGGTCATGCTGGTTGACCCGCG‑CTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCt                                                                                   <  4:124520/148‑1 (MQ=255)                                                                 tGCTCAATGCTCCTGGTCATGCTGGTTGACCCGCG‑CTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCt                                                                                   >  3:124520/1‑148 (MQ=255)                                                                      aaTGCTCCTGGTCATGCTGGTTGACCCGCG‑CTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGAACGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCg                                                                              >  1:260851/1‑148 (MQ=255)                                                                           tCCTGGTCATGCTGGTTGACCCGCG‑CTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAg                                                                        >  6:181371/1‑149 (MQ=255)                                                                             cTGGTCATGCTGGTTGACCCGCG‑CTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCt                                                                      >  5:67549/1‑149 (MQ=255)                                                                                         gTTGACCCGCG‑CTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGa                                                          >  1:247623/1‑149 (MQ=255)                                                                                              cccGCG‑CTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTc                                                     <  7:108540/149‑1 (MQ=255)                                                                                               ccGCG‑CTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTcg                                                    >  6:231675/1‑149 (MQ=255)                                                                                                   g‑cTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTcgccgc                                                >  2:32494/1‑149 (MQ=255)                                                                                                                ttCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTc                                    <  2:247623/149‑1 (MQ=255)                                                                                                                   tGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGTGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCtt                                 >  3:210682/1‑149 (MQ=255)                                                                                                                   tGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCtt                                 >  6:121461/1‑149 (MQ=255)                                                                                                                   tGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCtt                                 >  6:126307/1‑149 (MQ=255)                                                                                                                     gAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCtt                                 <  1:312055/147‑1 (MQ=255)                                                                                                                            gcAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCTTTACCAGCga                        <  2:260851/149‑1 (MQ=255)                                                                                                                              aaGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCTTTACCAGc                          >  8:183707/1‑145 (MQ=255)                                                                                                                                 gATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCTTTACCAGCGAGATGa                   <  2:61592/149‑1 (MQ=255)                                                                                                                                     ctgcACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCTTTACCAGCGAGATGAAGCt               >  5:72353/1‑149 (MQ=255)                                                                                                                                      tgcACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCTTTACCAGCGAGATGAAGCTg              >  3:188758/1‑149 (MQ=255)                                                                                                                                        cacaGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCTTTACCAGCGAGATGAAGCTGtt            <  1:57281/149‑1 (MQ=255)                                                                                                                                          caGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCTTTACCAGCGAGATGAAGCTGTTGc          <  5:181371/149‑1 (MQ=255)                                                                                                                                              aCCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCTTTACCAGCGAGATGAAGCTGTTGCCCAg      >  6:53464/1‑149 (MQ=255)                                                                                                                                               cccAGctgattaccgcgcgcacgttcgaagtgttcaccatgtacgtggcggtcgcggtcatctactgggtgctgtgcagcatccttgcgcacttccagaaccgcatggaagcgcgggtcaaccagcatgaccaggagcattgagcatga     >  5:56580‑M1/1‑5 (MQ=255)                                                                                                                                                ccAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGctgggtgctgtgcagcatccttgcgcacttccagaaccgcatggaagcgcgggtcaaccagcatgaccaggagcattgagcatgat    <  2:307256‑M2/149‑87 (MQ=255)                                                                                                                                                ccAGTAGATGACAGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCTTTACCAGCGAGATGAAGCTGTTGCCCAGCg    >  7:24278/1‑149 (MQ=255)                                                                                                                                                 cAGctgattaccgcgcgcacgttcgaagtgttcaccatgtacgtggcggtcgcggtcatctactgggtgctgtgcagcatccttgcgcacttccagaaccgcatggaagcgcgggtcaaccagcatgaccaggagcattgagcatgatt   <  5:100685‑M1/149‑147 (MQ=255)                                                                                                                                                  aGctgattaccgcgcgcacgttcgaagtgttcaccatgtacgtggcggtcgcggtcatctactgggtgctgtgcagcatccttgcgcacttccagaaccgcatggaagcgcgggtcaaccagcatgaccaggagcattgagcatgatt   >  2:301313‑M1/1‑2 (MQ=255)                                                                                                                                                  aGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCTTTACCAGCGAGATGAAGATGTTGCCCAGAGGt  >  8:43770/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                    AGGTCGATACCGTTGAGCACGGTCTGGCCCTTGAACCGCTTGGTCAGGCCTTTGACTTCAATCATGCTCAATGCTCCTGGTCATGCTGGTTGACCCGCG‑CTTCCATGCGGTTCTGGAAGTGCGCAAGGATGCTGCACAGCACCCAGTAGATGACCGCGACCGCCACGTACATGGTGAACACTTCGAACGTGCGCGCGGTAATCAGCTGGGCTTGGCGGAACAGCTCGGGCACCTGGATGGTCGCCGCCAGGGCGGTGTCCTTTACCAGCGAGATGAAGCTGTTGCCCAGCGGT  >  NC_002947/279513‑279805

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.