New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 714904	52 (1.050)	3 (0.060)	3/246	NT	5.7%	coding (918/948 nt)	ispH	4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase
	?	NC_002947	= 714935	49 (1.030)					intergenic (+1/+76)	ispH/PP_0607	4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase/type IV pili biogenesis protein FimT

TTTGACCAGGCCGCGCGCATCGGCATCACCGCCGGTGCTTCTGCGCCCGAAGTGCTGGTGCGTGGCGTGATCGAACAGCTCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/714755‑714904 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcccGTCAGATCAGCGAGCGAACCCGCAGCTCTTTGGGCATTGAAAAGGTGATGTTCTCTTCGCGCCCGTCCAGCTCTTCAGCGCCAGTGGCGCCCCAGGCCTTGAGCTGTTCGATCACGCCACGCACCAGCACTTCGGGCGCAGAAGCACC  <  NC_002947/714935‑714788                                                                                                                                                                                                                                                                                                            TTTGACCAGGCCGCGCGCATCGGCATCACCGCCGGTGCTTCTGCGCCCGAAGTGCTGGTGCGTGGCGTGATCGAACAGCTCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCC                                                                                                                                                       >  7:170579/1‑149                                         CTGCGCCCGAAGTGCTGGTGCGTGGCGTGATCGAACAGCTCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCGTCAGATCAGCGAGCGAACCCGCAGCTCTTTGGGCATT                                                                                                                <  6:191124/148‑1                                                                                TCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCGTCAGATCAGCGAGCGAACCCGCAGCTCTTTGGGCATTGAAAAGG                                                                                                         >  7:240382/1‑116                                                                                TCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCGTCAGATCAGCGAGCGAACCCGCAGCTCTTTGGGCATTGAAAAGG                                                                                                         <  8:240382/116‑1                                                                                                                                                      CGTCAGATCAGCGAGCAAACCCGCAGCTCTTTTGGCATTTAAAAGGTGATGTTCTCTTCGCGCCCGTCCAGCTCTTCAGCGCCAGTGGCGCCCCAGGCCTTGAGCTGTTCGATCACGCCACGCACCAGCACTTCGGGCGCAGAAGCACC  <  2:38906/149‑1                                                                                                                                                                                                                                                                                                            TTTGACCAGGCCGCGCGCATCGGCATCACCGCCGGTGCTTCTGCGCCCGAAGTGCTGGTGCGTGGCGTGATCGAACAGCTCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/714755‑714904 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcccGTCAGATCAGCGAGCGAACCCGCAGCTCTTTGGGCATTGAAAAGGTGATGTTCTCTTCGCGCCCGTCCAGCTCTTCAGCGCCAGTGGCGCCCCAGGCCTTGAGCTGTTCGATCACGCCACGCACCAGCACTTCGGGCGCAGAAGCACC  <  NC_002947/714935‑714788

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.