New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 714904	52 (1.050)	3 (0.060)	3/246	NT	5.7%	coding (918/948 nt)	ispH	4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase
	?	NC_002947	= 714935	49 (1.030)					intergenic (+1/+76)	ispH/PP_0607	4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase/type IV pili biogenesis protein FimT

ACCAGGCCGCGCGCATCGGCATCACCGCCGGTGCTTCTGCGCCCGAAGTGCTGGTGCGTGGCGTGATCGAACAGCTCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGACCGCTCCTGCAATGACCGCGCTAGCAGCGGTCATTGCTCAGGTCCTCCGTAAGCAACCTGAC  >  NC_002947/714759‑715052                                                                                                                                                  |                                                                                                                                                     aCCAGGCCGCGCGCATCGGCATCACCGCCGGTGCTTCTGCGCCCGAAGTGCTGGTGCGTGGCGTGATCGAACAGCTCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCaaa                                                                                                                                                   <  1:238640/149‑1 (MQ=255)  ccAGGCCGCGCGCATCGGCATCACCGCCGGTGCTTCTGCGCCCGAAGTGCTGGTGCGTGGCGTGATCGAACAGCTCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAag                                                                                                                                                  <  2:300615/149‑1 (MQ=255)    aGGCCGCGCGCATCGGCATCACCGCCGGTGCTTCTGCGCCCGAAGTGCTGGTGCGTGGCGTGATCGAACAGCTCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAagag                                                                                                                                                <  6:312186/149‑1 (MQ=255)                tCGGCATCACCGCCGGTGCTTCTGCGCCCGAAGTGCTGGTGCGTGGCGTGATCGAACAGCTCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTtcgc                                                                                                                                    >  1:194460/1‑149 (MQ=255)                tCGGCATCACCGCCGGTGCTTCTGCGCCCGAAGTGCTGGTGCGTGGCGTGATCGAACAGCTCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTtcgc                                                                                                                                    >  1:33251/1‑149 (MQ=255)                  ggCATCACCGCCGGTGCTTCTGCGCCCGAAGTGCTGGTGCGTGGCGTGATCGAACAGCTCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTtcgctc                                                                                                                                  <  6:317165/149‑1 (MQ=255)                   gCATCACCGCCGGTGCTTCTGCGCCCGAAGTGCTGGTGCGTGGCGTGATCGAACAGCTCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTtcgctcg                                                                                                                                 >  5:213613/1‑149 (MQ=255)                              ggTGCTTCTGCGCCCGAAGTGCTGGTGCGTGGCGTGATCGAACAGCTCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTAAATGCCAAAAGAGCTGCGGGTTTGCTCGCTGATCTGACg                                                                                                                      <  2:38906‑M2/149‑2 (MQ=255)                                   ttCTGCGCCCGAAGTGCTGGTGCGTGGCGTGATCGAACAGCTCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAg                                                                                                                 >  3:295747/1‑149 (MQ=255)                                     cTGCGCCCGAAGTGCTGGTGCGTGGCGTGATCGAACAGCTCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCgtcagatcagcgagcgaacccgcagctctttgggcatt                                                                                                                <  6:191124‑M1/148‑39 (MQ=255)                                        cgcCCGAAGTGCTGGTGCGTGGCGTGATCGAACAGCTCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTAcc                                                                                                             <  7:188978/148‑1 (MQ=255)                                             gAAGTGCTGGTGCGTGGCGTGATCGAACAGCTCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAGCATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACcgccgc                                                                                                        >  6:172407/1‑148 (MQ=255)                                                      gTGCGTGGCGTGATCGACCAGCTCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAggg                                                                                              >  8:219191/1‑149 (MQ=255)                                                      gTGCGTGGCGTGATCGAACAGCTCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAggg                                                                                              >  8:16893/1‑149 (MQ=255)                                                      gTGCGTGGCGTGATCGAACAGCTCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAg                                                                                                <  2:194460/147‑1 (MQ=255)                                                              cgtgATCGAACAGCTCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCttt                                                                                      >  1:30725/1‑149 (MQ=255)                                                              cgtgATCGAACAGCTCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCttt                                                                                      >  8:185768/1‑149 (MQ=255)                                                               gtgATCGAACAGCTCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTg                                                                                     <  2:30725/149‑1 (MQ=255)                                                               gtgATCGAACAGCTCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTg                                                                                     <  4:260896/149‑1 (MQ=255)                                                                tgATCGAACAGCTCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTACGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGc                                                                                    <  7:191215/149‑1 (MQ=255)                                                                 gATCGAACAGCTCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCa                                                                                   <  7:16893/149‑1 (MQ=255)                                                                    cGAACAGCTCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGcc                                                                                >  4:257530/1‑149 (MQ=255)                                                                     gAACAGCTCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGccc                                                                               <  3:189085/149‑1 (MQ=255)                                                                       aCAGCTCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAAGGGCTGCAAAGCAGcccct                                                                             <  4:295747/149‑3 (MQ=255)                                                                            tCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCgtcagatcagcgagcgaacccgcagctctttgggcattgaaaagg                                                                                                         <  8:240382‑M1/116‑46 (MQ=255)                                                                            tCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCgtcagatcagcgagcgaacccgcagctctttgggcattgaaaagg                                                                                                         >  7:240382‑M1/1‑71 (MQ=255)                                                                            tCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTgcgc                                                                         >  7:191112/1‑148 (MQ=255)                                                                            tCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGcgcg                                                                        >  5:80957/1‑149 (MQ=255)                                                                              aaGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGa                                                                       <  7:219191/148‑1 (MQ=255)                                                                                 gCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGc                                                                                 >  1:8114/1‑135 (MQ=255)                                                                                 gCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGc                                                                                 <  2:8114/135‑1 (MQ=255)                                                                                  ccTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGacac                                                                    >  7:53035/1‑147 (MQ=255)                                                                                  ccTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACaa                                                                  <  7:67883/149‑1 (MQ=255)                                                                                  ccTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACaa                                                                  <  6:213613/149‑1 (MQ=255)                                                                                                 gcgcTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTTGCTCGCTTATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGACCGCTCCTGCAAt                                                   <  1:38906/149‑1 (MQ=255)                                                                                                 gcgcTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGACCGCTCCTGCaa                                                    <  6:80957/148‑1 (MQ=255)                                                                                                    cTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGACCGCTCCTGCAATGAc                                                <  5:54179/149‑1 (MQ=255)                                                                                                     tGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGACCGCTCCTGCAATGAcc                                               >  5:267885/1‑149 (MQ=255)                                                                                                      gAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGACCGCTCCTGCAATGACcg                                              >  4:5885/1‑149 (MQ=255)                                                                                                       aaGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGACCGCTCCTGCAATGACcgc                                             <  7:185768/149‑1 (MQ=255)                                                                                                        agagCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGACCGCTCCTGCAATGACcgc                                             <  3:5885/148‑1 (MQ=255)                                                                                                            cTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGACCGCTCCTGCAATGACCGCGCTag                                        >  4:109615/1‑149 (MQ=255)                                                                                                            cTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGACCGCTCCTGCAATGACCGCGCTag                                        >  8:269542/1‑149 (MQ=255)                                                                                                               gACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGACCGCTCCTGCAATGACCGCGCTagcag                                     <  8:191112/149‑1 (MQ=255)                                                                                                                aCGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGACCGCTCCTGCAATGACCGCGCTagcagc                                    <  2:33251/149‑1 (MQ=255)                                                                                                                      gcgAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGACCGCTCCTGCAATGACCGCGCTAGCAGCGGTCa                               <  8:53035/148‑1 (MQ=255)                                                                                                                       cgAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGACCGCTCCTGCAATGACCGCGCTAGCAGCGGTCAtt                             <  8:170579/149‑1 (MQ=255)                                                                                                                        gAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGACCGCTCCTGCAATGACCGCGCTAGCAGCGGTCATTg                            <  3:109615/149‑1 (MQ=255)                                                                                                                         aaGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGACCGCTCCTGCAATGACCGCGCTAGCAGCGGTCATTGc                           <  3:257530/149‑1 (MQ=255)                                                                                                                           gagaACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGc                                                                                 <  1:237555/93‑1 (MQ=255)                                                                                                                           gagaACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGc                                                                                 >  2:237555/1‑93 (MQ=255)                                                                                                                             gaACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGACCGCTCCTGCAATGACCGCGCTAGCAGCGGTCATTGCTCAg                       <  2:97775/149‑1 (MQ=255)                                                                                                                                cATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGACCGCTCCTGCAATGACCGCGCTAGCAGCGGTCATTGCTCAGGtc                    <  5:172407/149‑1 (MQ=255)                                                                                                                                  tCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGACCGCTCCTGCAATGACCGCGCTAGCAGCGGTCATTGCTCAGGtcct                  >  4:70625/1‑149 (MQ=255)                                                                                                                                   cACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGACCGCTCCTGCAATGACCGCGCTAGCAGCGGTc                                <  4:83626/134‑1 (MQ=255)                                                                                                                                   cACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGACCGCTCCTGCAATGACCGCGCTAGCAGCGGTc                                >  3:83626/1‑134 (MQ=255)                                                                                                                                     ccTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACgggcattgaaaaggtgatgttctcttcgcgcccgtccagctcttcagcgccagtggcgccccaggccttga                                                >  7:240382‑M2/1‑45 (MQ=255)                                                                                                                                     ccTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACgggcattgaaaaggtgatgttctcttcgcgcccgtccagctcttcagcgccagtggcgccccaggccttga                                                <  8:240382‑M2/116‑72 (MQ=255)                                                                                                                                            aaTGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACgggcattgaaaaggtgatgttctcttcgcgcccgtccagctcttcagcgccagtggcgccccaggccttgagctgttcgatcacgccacgcaccagcacttcgggcgcag         <  6:191124‑M2/148‑111 (MQ=255)                                                                                                                                            aaTGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGa                                                                >  4:183205/1‑93 (MQ=255)                                                                                                                                            aaTGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGa                                                                <  3:183205/93‑1 (MQ=255)                                                                                                                                                  cgtcagatcagcgagcaaacccgcagctcttttggcatttaaaaggtgatgttctcttcgcgcccgtccagctcttcagcgccagtggcgccccaggccttgagctgttcgatcacgccacgcaccagcacttcgggcgcagaagcacc  <  2:38906‑M1/149‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                     ACCAGGCCGCGCGCATCGGCATCACCGCCGGTGCTTCTGCGCCCGAAGTGCTGGTGCGTGGCGTGATCGAACAGCTCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGACCGCTCCTGCAATGACCGCGCTAGCAGCGGTCATTGCTCAGGTCCTCCGTAAGCAACCTGAC  >  NC_002947/714759‑715052

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.