New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 714904	52 (1.050)	3 (0.060)	3/246	NT	5.7%	coding (918/948 nt)	ispH	4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase
	?	NC_002947	= 714935	49 (1.030)					intergenic (+1/+76)	ispH/PP_0607	4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase/type IV pili biogenesis protein FimT

GGTGCTTCTGCGCCCGAAGTGCTGGTGCGTGGCGTGATCGAACAGCTCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGACCGCTCCTGCAATGACCGCGCTAGCAGCGGTCATTGCTCAGGTCCTCCGTAAGCAACCTGACTCTGCCGCTTGATGCCAGCAC  >  NC_002947/714788‑715073                                                                                                                                                    |                                                                                                                                           ggTGCTTCTGCGCCCGAAGTGCTGGTGCGTGGCGTGATCGAACAGCTCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTAAATGCCAAAAGAGCTGCGGGTTTGCTCGCTGATCTGACg                                                                                                                                           <  2:38906‑M2/149‑2 (MQ=255)      ttCTGCGCCCGAAGTGCTGGTGCGTGGCGTGATCGAACAGCTCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAg                                                                                                                                      >  3:295747/1‑149 (MQ=255)           cgcCCGAAGTGCTGGTGCGTGGCGTGATCGAACAGCTCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTAcc                                                                                                                                  <  7:188978/148‑1 (MQ=255)                gAAGTGCTGGTGCGTGGCGTGATCGAACAGCTCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAGCATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACcgccgc                                                                                                                             >  6:172407/1‑148 (MQ=255)                         gTGCGTGGCGTGATCGACCAGCTCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAggg                                                                                                                   >  8:219191/1‑149 (MQ=255)                         gTGCGTGGCGTGATCGAACAGCTCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAggg                                                                                                                   >  8:16893/1‑149 (MQ=255)                         gTGCGTGGCGTGATCGAACAGCTCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAg                                                                                                                     <  2:194460/147‑1 (MQ=255)                                 cgtgATCGAACAGCTCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCttt                                                                                                           >  1:30725/1‑149 (MQ=255)                                 cgtgATCGAACAGCTCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCttt                                                                                                           >  8:185768/1‑149 (MQ=255)                                  gtgATCGAACAGCTCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTg                                                                                                          <  2:30725/149‑1 (MQ=255)                                  gtgATCGAACAGCTCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTg                                                                                                          <  4:260896/149‑1 (MQ=255)                                   tgATCGAACAGCTCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTACGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGc                                                                                                         <  7:191215/149‑1 (MQ=255)                                    gATCGAACAGCTCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCa                                                                                                        <  7:16893/149‑1 (MQ=255)                                       cGAACAGCTCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGcc                                                                                                     >  4:257530/1‑149 (MQ=255)                                        gAACAGCTCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGccc                                                                                                    <  3:189085/149‑1 (MQ=255)                                          aCAGCTCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAAGGGCTGCAAAGCAGcccct                                                                                                  <  4:295747/149‑3 (MQ=255)                                               tCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTgcgc                                                                                              >  7:191112/1‑148 (MQ=255)                                               tCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGcgcg                                                                                             >  5:80957/1‑149 (MQ=255)                                                 aaGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGa                                                                                            <  7:219191/148‑1 (MQ=255)                                                    gCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGc                                                                                                      <  2:8114/135‑1 (MQ=255)                                                    gCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGc                                                                                                      >  1:8114/1‑135 (MQ=255)                                                     ccTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGacac                                                                                         >  7:53035/1‑147 (MQ=255)                                                     ccTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACaa                                                                                       <  7:67883/149‑1 (MQ=255)                                                     ccTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACaa                                                                                       <  6:213613/149‑1 (MQ=255)                                                                    gcgcTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTTGCTCGCTTATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGACCGCTCCTGCAAt                                                                        <  1:38906/149‑1 (MQ=255)                                                                    gcgcTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGACCGCTCCTGCaa                                                                         <  6:80957/148‑1 (MQ=255)                                                                       cTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGACCGCTCCTGCAATGAc                                                                     <  5:54179/149‑1 (MQ=255)                                                                        tGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGACCGCTCCTGCAATGAcc                                                                    >  5:267885/1‑149 (MQ=255)                                                                         gAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGACCGCTCCTGCAATGACcg                                                                   >  4:5885/1‑149 (MQ=255)                                                                          aaGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGACCGCTCCTGCAATGACcgc                                                                  <  7:185768/149‑1 (MQ=255)                                                                           agagCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGACCGCTCCTGCAATGACcgc                                                                  <  3:5885/148‑1 (MQ=255)                                                                               cTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGACCGCTCCTGCAATGACCGCGCTag                                                             >  4:109615/1‑149 (MQ=255)                                                                               cTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGACCGCTCCTGCAATGACCGCGCTag                                                             >  8:269542/1‑149 (MQ=255)                                                                                  gACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGACCGCTCCTGCAATGACCGCGCTagcag                                                          <  8:191112/149‑1 (MQ=255)                                                                                   aCGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGACCGCTCCTGCAATGACCGCGCTagcagc                                                         <  2:33251/149‑1 (MQ=255)                                                                                         gcgAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGACCGCTCCTGCAATGACCGCGCTAGCAGCGGTCa                                                    <  8:53035/148‑1 (MQ=255)                                                                                          cgAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGACCGCTCCTGCAATGACCGCGCTAGCAGCGGTCAtt                                                  <  8:170579/149‑1 (MQ=255)                                                                                           gAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGACCGCTCCTGCAATGACCGCGCTAGCAGCGGTCATTg                                                 <  3:109615/149‑1 (MQ=255)                                                                                            aaGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGACCGCTCCTGCAATGACCGCGCTAGCAGCGGTCATTGc                                                <  3:257530/149‑1 (MQ=255)                                                                                              gagaACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGc                                                                                                      <  1:237555/93‑1 (MQ=255)                                                                                              gagaACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGc                                                                                                      >  2:237555/1‑93 (MQ=255)                                                                                                gaACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGACCGCTCCTGCAATGACCGCGCTAGCAGCGGTCATTGCTCAg                                            <  2:97775/149‑1 (MQ=255)                                                                                                   cATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGACCGCTCCTGCAATGACCGCGCTAGCAGCGGTCATTGCTCAGGtc                                         <  5:172407/149‑1 (MQ=255)                                                                                                     tCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGACCGCTCCTGCAATGACCGCGCTAGCAGCGGTCATTGCTCAGGtcct                                       >  4:70625/1‑149 (MQ=255)                                                                                                      cACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGACCGCTCCTGCAATGACCGCGCTAGCAGCGGTc                                                     <  4:83626/134‑1 (MQ=255)                                                                                                      cACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGACCGCTCCTGCAATGACCGCGCTAGCAGCGGTc                                                     >  3:83626/1‑134 (MQ=255)                                                                                                        ccTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACgggcattgaaaaggtgatgttctcttcgcgcccgtccagctcttcagcgccagtggcgccccaggccttga                                                                     >  7:240382‑M2/1‑45 (MQ=255)                                                                                                        ccTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACgggcattgaaaaggtgatgttctcttcgcgcccgtccagctcttcagcgccagtggcgccccaggccttga                                                                     <  8:240382‑M2/116‑72 (MQ=255)                                                                                                               aaTGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACgggcattgaaaaggtgatgttctcttcgcgcccgtccagctcttcagcgccagtggcgccccaggccttgagctgttcgatcacgccacgcaccagcacttcgggcgcag                              <  6:191124‑M2/148‑111 (MQ=255)                                                                                                               aaTGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGa                                                                                     >  4:183205/1‑93 (MQ=255)                                                                                                               aaTGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGa                                                                                     <  3:183205/93‑1 (MQ=255)                                                                                                                      aaaGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGACCGCTCCTGCAATGACCGCGCTAGCAGCGGTCATTGCTCAGGTCCTCCGTAAGCAACCTGAct                      >  6:246179/1‑149 (MQ=255)                                                                                                                               cGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGACCGCTCCTGCAATGACCGCGCTAGCAGCGGTCATTGCTCAGGTCCTCCGTAAGCAACCTGACTCTGCCGCt              <  1:126233/148‑1 (MQ=255)                                                                                                                                       ctcgctGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGACCGCTCCTGCAATGACCGCGCTAGCAGCGGTCATTGCTCAGGTCCTCCGTAAGCAACCTGACTCTGCCGCTTGATGCCAg     >  4:91806/1‑149 (MQ=255)                                                                                                                                           ctGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGACCGCTCCTGCAATGACCGCGCTAGCAGCGGTCATTGCTCAGGTCCTCCGTAAGCAACCTGACTCTGCCGCTTGATGCCAGcac  >  2:71157/1‑148 (MQ=255)                                                                                                                                                 tGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGACCGCTCCTGCAATGACCGCGCTAGCAGCGGTCATTGCTCAGGTCCTCCGTAAGCAACCTg                         <  7:275014/119‑1 (MQ=255)                                                                                                                                                 tGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGACCGCTCCTGCAATGACCGCGCTAGCAGCGGTCATTGCTCAGGTCCTCCGTAAGCAACCTg                         >  8:275014/1‑119 (MQ=255)                                                                                                                                                    |                                                                                                                                           GGTGCTTCTGCGCCCGAAGTGCTGGTGCGTGGCGTGATCGAACAGCTCAAGGCCTGGGGCGCCACTGGCGCTGAAGAGCTGGACGGGCGCGAAGAGAACATCACCTTTTCAATGCCCAAAGAGCTGCGGGTTCGCTCGCTGATCTGACGGGCAGTACCGCCGCCAATGCAGGGGCTGCTTTGCAGCCCTTGCGCGACACAAGACCGCTCCTGCAATGACCGCGCTAGCAGCGGTCATTGCTCAGGTCCTCCGTAAGCAACCTGACTCTGCCGCTTGATGCCAGCAC  >  NC_002947/714788‑715073

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.