| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 888950 | 60 (1.220) | 4 (0.090) | 4/244 | NT | 6.4% | coding (380/693 nt) | PP_0769 | sensor histidine kinase |
| ? | NC_002947 | = 888978 | 59 (1.250) | coding (408/693 nt) | PP_0769 | sensor histidine kinase | |||||
CCATGAGCTGGATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/888819‑888950‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtggcGTTGGTGATGACGTTGGCGATCACCGAGGCCACCAGTTCGCGGTCGAAGAAACCCAGCGGGTTGTCGGTGTCGATGCGCCAAGTGGCGAGAATGTCGTTGTGCTTGAGTACTTCCTCGTGCGCCGCCAGCTGAGCTTCGATGAAA < NC_002947/888978‑888834 CCATGAGCTGGATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCGGCTGGGTTTCTTCGACCGCGAACTGGTGGC < 1:216345/132‑1CCATGAGCTGGATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAACTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGC > 2:216345/1‑132 CATGAGCTGGATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTG < 6:308311/129‑1 CGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATAGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGTTGGCGTTGGTGATGACGTTGGCGATCACCGAGGCCACCAGT < 8:66661/127‑1 CGAGGAAGTAATCAAGCACAACGACATTCTCGACACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCGTTGGTGATGACGTTGGCGATCACCGAGGCCACCAGT > 7:66661/1‑127 AACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCGTTGGTGATGACGTTGGCGATCACCGAGGCCAC > 1:118192/1‑104 AACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCGTTGGTGATGACGTTGGCGATCACCGAGGCCAC < 2:118192/104‑1 GTGGCGTTTGTGATGACGTTGTCGATCACCGAGGGCACCAGTTCGCGTTCGAAGAAACCCAGCGGGTTGTCGGTGGCGATGCGCCAAGCGGCGAGAACGTCGCTGTGCATGAGTACTTCCTCGTGCGCCGCCAGCTGAGCTTCGATGAA < 1:203737/149‑1 GTGGCGTTGGTGATGACGTTGGCGATCACCGAGGCCACCAGTTCGCGGTCGAAGAAACCCAGCGGGTTGTCGGTGTCGATGCGCCAAGTGGCGAGAATGTCGTTGTGCTTGAGTACTTCCTCGTGCGCCGCCAGCTGAGCTTCGATGAA < 6:176260/149‑1 GTGGCGTTGGTGATGACGTTGGCGATCACCGAGGCCACCAGTTCGCGGTCGAAGAAACCCAGCGGGTTGTCGGTGTCGATGCGCCAAGTGGCGAGAATGTCGTTGTGCTTGAGTACTTCCTCGTGCGCCGCCAGCTGAGCTTCGATGA > 5:136874/1‑148 TGGCGTTGGTGATGACGTTGGCGATCACCGAGGCCACCAGTTCGCGGTCGAAGAAACCCAGCGGGTTGTCGGTGTCGATGCGCCAAGTGGCGAGAATGTCGTTGTGCTTGAGTACTTCCTCGTGCGCCGCCAGCTGAGCTTCGATGAAA < 5:29127/149‑1 TGGCGTTGGTGATGACGTTGGCGATCACCGAGGCCACCAGTTCGCGGTCGAAGAAACCCAGCGGGTTGTCGGTGTCGATGCGCCAAGTGGCGAGAATGTCGTTGTGCTTGAGTACTTCCTCGTGCGCCGCCAGCTGAGCTTCGATGAAA < 6:43815/149‑1 CCATGAGCTGGATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/888819‑888950‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtggcGTTGGTGATGACGTTGGCGATCACCGAGGCCACCAGTTCGCGGTCGAAGAAACCCAGCGGGTTGTCGGTGTCGATGCGCCAAGTGGCGAGAATGTCGTTGTGCTTGAGTACTTCCTCGTGCGCCGCCAGCTGAGCTTCGATGAAA < NC_002947/888978‑888834 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |