New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 888950	60 (1.220)	4 (0.090)	4/244	NT	6.4%	coding (380/693 nt)	PP_0769	sensor histidine kinase
	?	NC_002947	= 888978	59 (1.250)					coding (408/693 nt)	PP_0769	sensor histidine kinase

TTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCATCGACTCGAC  >  NC_002947/888834‑889124                                                                                                                                                 |                                                                                                                                                   tttCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACgcca                                                                                                                                                <  5:29127‑M2/149‑5 (MQ=255) tttCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACgcca                                                                                                                                                <  6:43815‑M2/149‑5 (MQ=255)  ttCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCATGCACAGCGACGTTCTCGCCGCTTGGCGCATCGCCACCGACAACCCGCTGGGTTTCTTCGAACGCGAACTGGTGCCCTCGGTGATCGACAACGTCATCACAAACgccac                                                                                                                                               <  1:203737‑M2/149‑6 (MQ=255)  ttCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACgccac                                                                                                                                               <  6:176260‑M2/149‑6 (MQ=255)   tCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACgccac                                                                                                                                               >  5:136874‑M2/1‑143 (MQ=255)     aTCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCg                                                                                                                                            >  4:282396/1‑149 (MQ=255)      tCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGc                                                                                                                                           <  6:238549/149‑1 (MQ=255)      tCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGc                                                                                                                                           >  2:14200/1‑149 (MQ=255)               aGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCggg                                                                                                                                  <  5:43815/149‑1 (MQ=255)               aGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCg                                                                                                                                    <  8:65393/147‑1 (MQ=255)                gCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGc                                                                                                                                 <  6:29127/149‑1 (MQ=255)                         gcACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGc                                                                                                                        >  3:250554/1‑149 (MQ=255)                               ggAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCa                                                                                                                  >  3:28888/1‑149 (MQ=255)                                gAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCggg                                                                                                                                  <  7:118356/132‑1 (MQ=255)                                gAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCggg                                                                                                                                  >  8:118356/1‑132 (MQ=255)                                gAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCAc                                                                                                                 >  1:63270/1‑149 (MQ=255)                                   gTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCAt                                                                                                              >  7:32376/1‑149 (MQ=255)                                   gTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCAt                                                                                                              >  7:27542/1‑149 (MQ=255)                                   gTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCCCTTTGCCGGGCACGCCTTGCTGATCACCAt                                                                                                              <  1:26212/149‑1 (MQ=255)                                         aaGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGaa                                                                                                          >  5:190523/1‑147 (MQ=255)                                         aaGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAaga                                                                                                        <  2:246869/149‑1 (MQ=255)                                           gCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAgg                                                                                                      >  3:140736/1‑149 (MQ=255)                                           gCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAgg                                                                                                      >  4:23290/1‑149 (MQ=255)                                               aaCGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGa                                                                                                  >  4:196620/1‑149 (MQ=255)                                                acgaacttCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCATCCACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGAc                                                                                                 <  8:126426/143‑1 (MQ=255)                                                  gACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACaa                                                                                               >  1:303909/1‑149 (MQ=255)                                                   aCATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGACTTGCTGATCACCATCGAAGAGGCCGACAAc                                                                                              <  2:203737/149‑1 (MQ=255)                                                         tcGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTg                                                                                        >  4:277486/1‑149 (MQ=255)                                                           ggcACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGAGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTgg                                                                                       <  7:277896/146‑1 (MQ=255)                                                           gCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGtt                                                                                         <  4:28888/146‑1 (MQ=255)                                                            ccACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGc                                                                                      >  5:19361/1‑148 (MQ=255)                                                            ccACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGc                                                                                      >  7:9582/1‑148 (MQ=255)                                                             cACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCa                                                                                    <  2:303909/149‑1 (MQ=255)                                                              aCTTGGCGAATCGACACCGAAAACCCTCTTGGTTTCTTCGACCTCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCAt                                                                                   <  8:211488/149‑1 (MQ=255)                                                                   gcgcATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCg                                                                              <  1:14200/149‑1 (MQ=255)                                                                   gcgcATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTGGGCAATTTGCg                                                                              >  5:81694/1‑149 (MQ=255)                                                                     gcATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGt                                                                             >  4:262256/1‑148 (MQ=255)                                                                     gcATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTc                                                                            <  6:190523/149‑1 (MQ=255)                                                                           acacCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGAt                                                                      >  8:260080/1‑149 (MQ=255)                                                                            cacCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATg                                                                     <  3:23290/149‑1 (MQ=255)                                                                             acCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAAc                                                                         <  8:109658/144‑1 (MQ=255)                                                                             acCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAAc                                                                         >  7:109658/1‑144 (MQ=255)                                                                                gACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACgg                                                                 <  4:250554/149‑1 (MQ=255)                                                                                     cccGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCGTCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCgg                                                            <  8:287409/149‑1 (MQ=255)                                                                                     cccGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCgg                                                            >  5:109670/1‑149 (MQ=255)                                                                                      ccGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCggg                                                           <  2:63270/149‑1 (MQ=255)                                                                                         cTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACaa                                                                                               >  8:59734/1‑110 (MQ=255)                                                                                         cTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACaa                                                                                               <  7:59734/110‑1 (MQ=255)                                                                                          tGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGCGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGa                                                                                                  >  8:173746/1‑106 (MQ=255)                                                                                              tttCTTCGACCACGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCa                                                    >  2:171219/1‑148 (MQ=255)                                                                                                tcttcGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCaaa                                                  <  3:185120/148‑1 (MQ=255)                                                                                                    cGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGcac                                              <  4:140736/148‑1 (MQ=255)                                                                                                    cGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGcac                                              <  5:176260/148‑1 (MQ=255)                                                                                                    cGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGc                                                <  8:9582/146‑1 (MQ=255)                                                                                                    cGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGc                                                <  7:260080/146‑1 (MQ=255)                                                                                                             aCTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACgccaccagttcgcggtcgaagaaacccagcgggttgtcggtgtcgatgcgccaagtgtcgagaatgtcgttgtgcttgattacttcctcg                                                          >  7:66661‑M2/1‑37 (MQ=255)                                                                                                             aCTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACgccaacagttcgcggtcgaagaaacccagcgggttgtcggtgtctatgcgccaagtggcgagaatgtcgttgtgcttgagtacttcctcg                                                          <  8:66661‑M2/127‑91 (MQ=255)                                                                                                             aCTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAgc                                    <  3:262256/149‑1 (MQ=255)                                                                                                                 gtggCCTCGGTGATCGCCAACGTCATCACCAACgccaccagttcgcggtcgaagaaacccagcgggttgtcggtgtcgatgcgccaagtggcgagaatgtcgtt                                                                             >  1:118192‑M2/1‑33 (MQ=255)                                                                                                                 gtggCCTCGGTGATCGCCAACGTCATCACCAACgccaccagttcgcggtcgaagaaacccagcgggttgtcggtgtcgatgcgccaagtggcgagaatgtcgtt                                                                             <  2:118192‑M2/104‑72 (MQ=255)                                                                                                                 gtggCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAgcgc                                  >  3:248725/1‑147 (MQ=255)                                                                                                                         ggTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGAtt                        <  6:109670/149‑1 (MQ=255)                                                                                                                           ttaTCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGTCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTAc                      <  3:196620/147‑1 (MQ=255)                                                                                                                           tGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTa                       >  2:306938/1‑148 (MQ=255)                                                                                                                              tCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATc                   <  6:19361/149‑1 (MQ=255)                                                                                                                                gCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATc                   >  6:122527/1‑147 (MQ=255)                                                                                                                                 ccAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAg                >  1:193461/1‑149 (MQ=255)                                                                                                                                   aaCGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGc                                                <  7:86016/115‑1 (MQ=255)                                                                                                                                   aaCGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGc                                                >  8:86016/1‑115 (MQ=255)                                                                                                                                   aaCGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAggg              >  5:121381/1‑149 (MQ=255)                                                                                                                                            aCCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCAtcgactc     >  6:82115/1‑149 (MQ=255)                                                                                                                                               aaCGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCAtcgactcgac  <  1:171219/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                   TTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCATCGACTCGAC  >  NC_002947/888834‑889124

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.