New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 888950	60 (1.220)	4 (0.090)	4/244	NT	6.4%	coding (380/693 nt)	PP_0769	sensor histidine kinase
	?	NC_002947	= 888978	59 (1.250)					coding (408/693 nt)	PP_0769	sensor histidine kinase

CGGTATGCCCGGACTACCATGAGCTGGATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACAT‑‑TCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAG  >  NC_002947/888803‑889095                                                                                                                                                      |                                                                                                                                                  cGGTATGCCCGGACTACCATGAGCTGGATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACAT‑‑TCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGcc                                                                                                                                                  >  2:26212/1‑149 (MQ=255)      tGCCCGGACTACCATGAGCTGTATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACAT‑‑TCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCgg                                                                                                                                              <  5:250748/148‑1 (MQ=255)      tGCCCGGACTACCATGAGCTGGATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACAT‑‑TCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCgg                                                                                                                                              <  4:165773/148‑1 (MQ=255)        cccGGACTACCATGAGCTGGATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACAT‑‑TCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGa                                                                                                                                           >  1:246869/1‑149 (MQ=255)        cccGGACCACCATGAGCTGGATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCgg                                                                                                                                              <  1:252811/148‑1 (MQ=255)         ccGGACTACCATGAGCTGGATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACAT‑‑TCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCACGAACTGGTGGCCTCGGTGAt                                                                                                                                          >  4:3329/1‑149 (MQ=255)                 ccATGAGCTGGATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACAT‑‑TCTCGCCACTTGGCGCATCGACACCGACAACCGGCTGGGTTTCTTCGACCGCGAACTGGTGGC                                                                                                                                                   <  1:216345‑M1/132‑1 (MQ=255)                 ccATGAGCTGGATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACAT‑‑TCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACg                                                                                                                                  >  5:238549/1‑149 (MQ=255)                 ccATGAGCTGGATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAACTACTCAAGCACAACGACAT‑‑TCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGC                                                                                                                                                   >  2:216345‑M1/1‑132 (MQ=255)                   aTGAGCTGGATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACAT‑‑TCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCACGAACTGGTGGCCTCGGTGATCGCCAACGtc                                                                                                                                <  3:3329/149‑1 (MQ=255)                    tGAGCTGGATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACAT‑‑TCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGtca                                                                                                                               >  7:65393/1‑149 (MQ=255)                    tGAGCTGGATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACAT‑‑TCTCGCCACTTGGCGCATCGACACCGACAACACGCTGGGTTTCTTCGACCGCGACCTGGTGGCCTCGCTGATCGCCAACGtc                                                                                                                                >  7:211488/1‑148 (MQ=255)                      aGCTGGATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACAT‑‑TCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGtcat                                                                                                                              <  7:133607/148‑1 (MQ=255)                           gatgatTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACAT‑‑TCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCaa                                                                                                                        >  4:185120/1‑149 (MQ=255)                           gatgatTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACAT‑‑TCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCaa                                                                                                                        >  7:287409/1‑149 (MQ=255)                                tttCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACAT‑‑TCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACgcca                                                                                                                   <  5:29127‑M2/149‑5 (MQ=255)                                tttCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACAT‑‑TCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACgcca                                                                                                                   <  6:43815‑M2/149‑5 (MQ=255)                                 ttCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCATGCACAGCGACGT‑‑TCTCGCCGCTTGGCGCATCGCCACCGACAACCCGCTGGGTTTCTTCGAACGCGAACTGGTGCCCTCGGTGATCGACAACGTCATCACAAACgccac                                                                                                                  <  1:203737‑M2/149‑6 (MQ=255)                                 ttCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACAT‑‑TCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACgccac                                                                                                                  <  6:176260‑M2/149‑6 (MQ=255)                                  tCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACAT‑‑TCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACgccac                                                                                                                  >  5:136874‑M2/1‑143 (MQ=255)                                    aTCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACAT‑‑TCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCg                                                                                                               >  4:282396/1‑149 (MQ=255)                                     tCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACAT‑‑TCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGc                                                                                                              <  6:238549/149‑1 (MQ=255)                                     tCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACAT‑‑TCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGc                                                                                                              >  2:14200/1‑149 (MQ=255)                                              aGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACAT‑‑TCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCggg                                                                                                     <  5:43815/149‑1 (MQ=255)                                              aGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACAT‑‑TCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCg                                                                                                       <  8:65393/147‑1 (MQ=255)                                               gCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACAT‑‑TCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGc                                                                                                    <  6:29127/149‑1 (MQ=255)                                                        gcACGAGGAAGTACTCAAGCACAACGACAT‑‑TCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGc                                                                                           >  3:250554/1‑149 (MQ=255)                                                           cGAGGAAGTACTCAAGCACAACGACAT‑‑TCTCGCCACTTGGCGCATAGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGTTGGCgttggtgatgacgttggcgatcaccgaggccaccagt                                                                                                              <  8:66661‑M1/127‑38 (MQ=255)                                                           cGAGGAAGTAATCAAGCACAACGACAT‑‑TCTCGACACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCgttggtgatgacgttggcgatcaccgaggccaccagt                                                                                                              >  7:66661‑M1/1‑90 (MQ=255)                                                              ggAAGTACTCAAGCACAACGACAT‑‑TCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCa                                                                                     >  3:28888/1‑149 (MQ=255)                                                               gAAGTACTCAAGCACAACGACAT‑‑TCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCggg                                                                                                     >  8:118356/1‑132 (MQ=255)                                                               gAAGTACTCAAGCACAACGACAT‑‑TCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCggg                                                                                                     <  7:118356/132‑1 (MQ=255)                                                               gAAGTACTCAAGCACAACGACAT‑‑TCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCAc                                                                                    >  1:63270/1‑149 (MQ=255)                                                                  gTACTCAAGCACAACGACAT‑‑TCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCAt                                                                                 >  7:27542/1‑149 (MQ=255)                                                                  gTACTCAAGCACAACGACAT‑‑TCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCAt                                                                                 >  7:32376/1‑149 (MQ=255)                                                                  gTACTCAAGCACAACGACAT‑‑TCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCCCTTTGCCGGGCACGCCTTGCTGATCACCAt                                                                                 <  1:26212/149‑1 (MQ=255)                                                                        aaGCACAACGACAT‑‑TCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGaa                                                                             >  5:190523/1‑147 (MQ=255)                                                                        aaGCACAACGACAT‑‑TCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAaga                                                                           <  2:246869/149‑1 (MQ=255)                                                                          gCACAACGACAT‑‑TCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAgg                                                                         >  4:23290/1‑149 (MQ=255)                                                                          gCACAACGACAT‑‑TCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAgg                                                                         >  3:140736/1‑149 (MQ=255)                                                                              aaCGACAT‑‑TCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCgttggtgatgacgttggcgatcaccgaggccac                                                                                                                  <  2:118192‑M1/104‑34 (MQ=255)                                                                              aaCGACAT‑‑TCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCgttggtgatgacgttggcgatcaccgaggccac                                                                                                                  >  1:118192‑M1/1‑71 (MQ=255)                                                                              aaCGACAT‑‑TCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGa                                                                     >  4:196620/1‑149 (MQ=255)                                                                               acgaact‑‑tCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCATCCACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGAc                                                                    <  8:126426/143‑1 (MQ=255)                                                                                 gACAT‑‑TCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACaa                                                                  >  1:303909/1‑149 (MQ=255)                                                                                  aCAT‑‑TCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGACTTGCTGATCACCATCGAAGAGGCCGACAAc                                                                 <  2:203737/149‑1 (MQ=255)                                                                                          tcGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTg                                                           >  4:277486/1‑149 (MQ=255)                                                                                            ggcACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGAGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTgg                                                          <  7:277896/146‑1 (MQ=255)                                                                                            gCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGtt                                                            <  4:28888/146‑1 (MQ=255)                                                                                             ccACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGc                                                         >  5:19361/1‑148 (MQ=255)                                                                                             ccACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGc                                                         >  7:9582/1‑148 (MQ=255)                                                                                              cACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCa                                                       <  2:303909/149‑1 (MQ=255)                                                                                               aCTTGGCGAATCGACACCGAAAACCCTCTTGGTTTCTTCGACCTCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCAt                                                      <  8:211488/149‑1 (MQ=255)                                                                                                    gcgcATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCg                                                 <  1:14200/149‑1 (MQ=255)                                                                                                    gcgcATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTGGGCAATTTGCg                                                 >  5:81694/1‑149 (MQ=255)                                                                                                      gcATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGt                                                >  4:262256/1‑148 (MQ=255)                                                                                                      gcATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTc                                               <  6:190523/149‑1 (MQ=255)                                                                                                            acacCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGAt                                         >  8:260080/1‑149 (MQ=255)                                                                                                             cacCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATg                                        <  3:23290/149‑1 (MQ=255)                                                                                                              acCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAAc                                            >  7:109658/1‑144 (MQ=255)                                                                                                              acCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAAc                                            <  8:109658/144‑1 (MQ=255)                                                                                                                 gACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACgg                                    <  4:250554/149‑1 (MQ=255)                                                                                                                      cccGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCGTCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCgg                               <  8:287409/149‑1 (MQ=255)                                                                                                                      cccGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCgg                               >  5:109670/1‑149 (MQ=255)                                                                                                                       ccGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCggg                              <  2:63270/149‑1 (MQ=255)                                                                                                                          cTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACaa                                                                  >  8:59734/1‑110 (MQ=255)                                                                                                                          cTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACaa                                                                  <  7:59734/110‑1 (MQ=255)                                                                                                                           tGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGCGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGa                                                                     >  8:173746/1‑106 (MQ=255)                                                                                                                               tttCTTCGACCACGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCa                       >  2:171219/1‑148 (MQ=255)                                                                                                                                 tcttcGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCaaa                     <  3:185120/148‑1 (MQ=255)                                                                                                                                     cGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGcac                 <  4:140736/148‑1 (MQ=255)                                                                                                                                     cGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGcac                 <  5:176260/148‑1 (MQ=255)                                                                                                                                     cGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGc                   <  8:9582/146‑1 (MQ=255)                                                                                                                                     cGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGc                   <  7:260080/146‑1 (MQ=255)                                                                                                                                              aCTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACgccaccagttcgcggtcgaagaaacccagcgggttgtcggtgtcgatgcgccaagtgtcgagaatgtcgttgtgcttgattacttcctcg                             >  7:66661‑M2/1‑37 (MQ=255)                                                                                                                                              aCTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACgccaacagttcgcggtcgaagaaacccagcgggttgtcggtgtctatgcgccaagtggcgagaatgtcgttgtgcttgagtacttcctcg                             <  8:66661‑M2/127‑91 (MQ=255)                                                                                                                                              aCTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAgc       <  3:262256/149‑1 (MQ=255)                                                                                                                                                  gtggCgtttgtgatgacgttgtcgatcaccgagggcaccagttcgcgttcgaagaaacccagcgggttgtcggtggcgatgcgccaagcggcgagaacgtcgctgtgcatgagtacttcctcgtgcgccgccagctgagcttcgatgaa   <  1:203737‑M1/149‑145 (MQ=255)                                                                                                                                                  gtggCgttggtgatgacgttggcgatcaccgaggccaccagttcgcggtcgaagaaacccagcgggttgtcggtgtcgatgcgccaagtggcgagaatgtcgttgtgcttgagtacttcctcgtgcgccgccagctgagcttcgatgaa   <  6:176260‑M1/149‑145 (MQ=255)                                                                                                                                                  gtggCgttggtgatgacgttggcgatcaccgaggccaccagttcgcggtcgaagaaacccagcgggttgtcggtgtcgatgcgccaagtggcgagaatgtcgttgtgcttgagtacttcctcgtgcgccgccagctgagcttcgatga    >  5:136874‑M1/1‑5 (MQ=255)                                                                                                                                                  gtggCCTCGGTGATCGCCAACGTCATCACCAACgccaccagttcgcggtcgaagaaacccagcgggttgtcggtgtcgatgcgccaagtggcgagaatgtcgtt                                                <  2:118192‑M2/104‑72 (MQ=255)                                                                                                                                                  gtggCCTCGGTGATCGCCAACGTCATCACCAACgccaccagttcgcggtcgaagaaacccagcgggttgtcggtgtcgatgcgccaagtggcgagaatgtcgtt                                                >  1:118192‑M2/1‑33 (MQ=255)                                                                                                                                                  gtggCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAgcgc     >  3:248725/1‑147 (MQ=255)                                                                                                                                                   tggCgttggtgatgacgttggcgatcaccgaggccaccagttcgcggtcgaagaaacccagcgggttgtcggtgtcgatgcgccaagtggcgagaatgtcgttgtgcttgagtacttcctcgtgcgccgccagctgagcttcgatgaaa  <  6:43815‑M1/149‑146 (MQ=255)                                                                                                                                                   tggCgttggtgatgacgttggcgatcaccgaggccaccagttcgcggtcgaagaaacccagcgggttgtcggtgtcgatgcgccaagtggcgagaatgtcgttgtgcttgagtacttcctcgtgcgccgccagctgagcttcgatgaaa  <  5:29127‑M1/149‑146 (MQ=255)                                                                                                                                                      |                                                                                                                                                  CGGTATGCCCGGACTACCATGAGCTGGATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACAT‑‑TCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAG  >  NC_002947/888803‑889095

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.