New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1371742	49 (0.990)	3 (0.070)	3/234	NT	6.6%	intergenic (+15/+57)	PP_1196/rimO	hypothetical protein/ribosomal protein S12 methylthiotransferase
	?	NC_002947	= 1371771	40 (0.890)					intergenic (+44/+28)	PP_1196/rimO	hypothetical protein/ribosomal protein S12 methylthiotransferase

GCAGATCAAGGAGCTTACCCTGTTCCTCACCCACAAGCTCAACCCGCAGTGGAAAGTCCAACTCTATGCAGTCAAAGGCTTCTCGGATGCCAGCCCGGATGCCGAGGGCGGCCTGATGCTGTTTCACACGTTCTGACAAAAAAGCCCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1371592‑1371742 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagcccctgcCCCGGCGTTCTCCATAGGGAATGACCGGCGCAGGGGCTTTTTTGTCAGAACGTGTGAAACAGCATCAGGCCGCCCTCGGCATCCGGGCTGGCATCCGAGAAGCCTTTGACTGCATAGAGTTGGACTTTCCACTGCGGG  <  NC_002947/1371771‑1371634                                                                                                                                                                                                                                                                                                   GCAGATCAAGGAGCTTACCCTGTTCCTCACCCACAAGCTCAACCCGCAGTGGAAAGTCCAACTCTATGCAGTCAAAGGCTTCTCGGATGCCAGCCCGGATGCCGAGGGCGGCCTGATGCTGTTTCACACGTTCTGACAAAAAAGCCCCT                                                                                                                                              >  5:294725/1‑149                               CCACAAGCTCAACCCGCAGTGGAAAGTCCAACTCTATGCAGTCAAAGGCTTCTCGGATGCCAGCCCGGATGCCGAGGGCGGCCTGATGCTGTTTCACACGTTCTGACAAAA                                                                                                                                                      <  2:79242/111‑1                               CCACAAGCTCAACCCGCAGTGGAAAGTCCAACTCTATGCAGTCAAAGGCTACTCGGATGCCAGCCCGGATGCCGAGGGCGGCCTGATGCTGTTTCACACGTTCTGACAAAA                                                                                                                                                      >  1:79242/1‑111                                      CTCAACCCGCAGTGGAAAGTCCAACTCTATGCAGTCAAAGGCTTCTCGGATGCCAGCCCGGATGCCGAGGGCGGCCTGATGCTGTTTCACACGTTCTGACAAAAAAGCCCCTGCCCCGGCGTTCTCCATAGGGAATGACCGGCGCAGGG                                                                                                         <  2:97152/149‑1                                             CGCAGTGGAAAGTCCAACTCTATGCAGTCAAAGGCTTCTCGGATGCCAGCCCGGATGCCGAGGGCGGCCTGATGCTGTTTCACACGTTCTGACAAAAAAGCCCCTGCCCCGGCGTTCTCCATAGGGAATGACCGGCGCAGG                                                                                                          <  1:195758/141‑1                                             CGCAGTGGAAAGTCCAACTCTATGCAGTCAAAGGCTTCTCGGATGCCAGCCCGGATGCCGAGGGCGGCCTGATGCTGTTTCACACGTTCTGACAAAAAAGCCCCTGCCCCGGCGTTCTCCATAGGGAATGACCGGCGCAGG                                                                                                          >  2:195758/1‑141                                                                                                                                             AAAGCCCCTGCCCCGGCGTTCTCCATAGGGAATGACCGGCGCAGGGGCTTTTTTGTCAGAACGTGTGAAACAGCATCAGGCCGCCCTCGGCATCCGGGCTGGCATCCGAGAAGCCTTTGACTGCATAGAGTTGGACTTTCCACTGCGGG  <  3:33511/149‑1                                                                                                                                                 CCCCTGCCCCGGCGTTCTCCATAGGGAATGACCGGCGCAGGGGCTTTTTTGTCAGAACGTGTGAAACAGCATCAGGCCGCCCTCGGCATCCGGGCTGGCATCCGAGAAGCCTTT                                 >  7:26372/1‑114                                                                                                                                                 CCCCTGCCCCGGCGTTCTCCATAGGGAATGACCGGCGCAGGGGCTTTTTTGTCAGAACGTGTGAAACAGCATCAGGCCGCCCTCGGCATCCGGGCTGGCATCCGAGAAGCCTTT                                 <  8:26372/114‑1                                                                                                                                                   CCTGCCCCGGCGTTCTCCATAGGGAATGACCGGCGCAGGGGCT                                                                                                      <  1:46696/43‑1                                                                                                                                                   CCTGCCCCGGCGTTCTCCATAGGGAATGACCGGCGCAGGGGCT                                                                                                      >  2:46696/1‑43                                                                                                                                                                                                                                                                                                   GCAGATCAAGGAGCTTACCCTGTTCCTCACCCACAAGCTCAACCCGCAGTGGAAAGTCCAACTCTATGCAGTCAAAGGCTTCTCGGATGCCAGCCCGGATGCCGAGGGCGGCCTGATGCTGTTTCACACGTTCTGACAAAAAAGCCCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1371592‑1371742 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagcccctgcCCCGGCGTTCTCCATAGGGAATGACCGGCGCAGGGGCTTTTTTGTCAGAACGTGTGAAACAGCATCAGGCCGCCCTCGGCATCCGGGCTGGCATCCGAGAAGCCTTTGACTGCATAGAGTTGGACTTTCCACTGCGGG  <  NC_002947/1371771‑1371634

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.