New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1371742	49 (0.990)	3 (0.070)	3/234	NT	6.6%	intergenic (+15/+57)	PP_1196/rimO	hypothetical protein/ribosomal protein S12 methylthiotransferase
	?	NC_002947	= 1371771	40 (0.890)					intergenic (+44/+28)	PP_1196/rimO	hypothetical protein/ribosomal protein S12 methylthiotransferase

CACAAGCTCAACCCGCAGTGGAAAGTCCAACTCTATGCAGTCAAAGGCTTCTCGGATGCCAGCCCGGATGCCGAGGGCGGCCTGATGCTGTTTCACACGTTCTGACAAAAAAGCCCCTGCGCCGGTCATTCCCTATGGAGAACG‑CCGGGGCAGGGGCTTTGCAGGCTTCAGCCGTTTTAGATGGGTTCAGCCCACATGTCGTACTCGTCGGCATCCACCACACGGCAACGCACTTTGTCGCCTGGCTTGAAACCATGGTCGCCATCGATGAACACGCTGCCGTCGATTTCCGGTGCA  >  NC_002947/1371623‑1371919                                                                                                                                                      |                                                                                                                                                     cacaAGCTCAACCCGCAGTGGAAAGTCCAACTCTATGCAGTCAAAGGCTTCTCGGATGCCAGCCCGGATGCCGAGGGCGGCCTGATGCTGTTTCACACGTTCTGACAAAAAAGCCCCTGCGCCGGTCATTCCCTATGGAGAACG‑CCggg                                                                                                                                                      >  6:271474/1‑149 (MQ=255)            cccGCAGTGGAAAGTCCAACTCTATGCAGTCAAAGGCTTCTCGGATGCCAGCCCGGATGCCGAGGGCGGCCTGATGCTGTTTCACACGTTCTGACAAAAAAGCCCCTGCGCCGGTCATTCCCTATGGAGAACG‑CCGGGgcaggggcttt                                                                                                                                           <  3:33511‑M2/149‑12 (MQ=255)              cGCAGTGGAAAGTCCAACTCTATGCAGTCAAAGGCTTCTCGGATGCCAGCCCGGATGCCGAGGGCGGCCGGATGCTGTTTCACACGTTCTGACAAAAAAGCCCCTGCGCCGGTCATTCCCTATGGAGAACG‑CCGGGGCAGGGGCTTTg                                                                                                                                          >  3:170580/1‑148 (MQ=255)                cAGTGGAAAGTCCAACTCTATGCAGTCAAAGGCTTCTCGGATGCCAGCCCGGATGCCGAGGGCGGCCTGATGCTGTTTCACACGTTCTGACAAAAAAGCCCCTGCGCCGGTCATTCCCTATGGAGAACG‑CCGGGGCAGGGGCTTTGCAg                                                                                                                                       <  1:26434/149‑1 (MQ=255)                              aCTCTATGCAGTCAAAGGCTTCTCGGATGCCAGCCCGGATGCCGAGGGCGGCCTGATGCTGTTTCACACGTTCTGACAAAAAAGCCCCTGCGCCGGTCATTCCCTATGGAGAACG‑CCGGGGCAGGGGCTTTGCAGGCTTCAGCCGtttt                                                                                                                         <  2:258582/149‑1 (MQ=255)                              aCTCTATGCAGTCAAAGGCTTCTCGGATGCCAGCCCGGATGCCGAGGGCGGCCTGATGCTGTTTCACACGTTCTGACAAAAAAGCCCCTGCGCCGGTCATTCCCTATGGAGAACG‑CCGGGGCAGGGGCTTTGCAGGCTTCAGCCGtttt                                                                                                                         <  5:271474/149‑1 (MQ=255)                                    tGCAGTCAAAGGCTTCTCGGATGCCAGCCCGGATGCCGAGGGCGGCCTGATGCTGTTTCACACGTTCTGACAAAAAAGCCCCTGCGCCGGTCATTCCCTATGGAGAACG‑CCGGGGCAGGGGCTTTGCAGGCTTCAGCCGTTTTAGa                                                                                                                      <  2:260751/146‑1 (MQ=255)                                    tGCAGTCAAAGGCTTCTCGGATGCCAGCCCGGATGCCGAGGGCGGCCTGATGCTGTTTCACACGTTCTGACAAAAAAGCCCCTGCGCCGGTCATTCCCTATGGAGAACG‑CCGGGGCAGGGGCTTTGCAGGCTTCAGCCGTTTTAGATgg                                                                                                                   >  4:95109/1‑149 (MQ=255)                                    tGCAGTCAAAGGCTTCTCGGATGCCAGCCCGGATGCCGAGGGCGGCCTGATGCTGTTTCACACGTTCTGACAAAAAAGCCCCTGCGCCGGTCATTCCCTATGGAGAACG‑CCGGGGCAGGGGCTTTGCAGGCTTCAGCCGTTTTAGATgg                                                                                                                   <  5:229304/149‑1 (MQ=255)                                       aGTCAAAGGCTTCTCGGATGCCAGCCCGGATGCCGAGGGCGGCCTGATGCTGTTTCACACGTTCTGACAAAAAAGCCCCTGCGCCGGTCATTCCCTATGGAGAACG‑CCGGGGCAGGGGCTTTGCAGGCTTCAGCCGTTTTAGATGGGtt                                                                                                                <  5:68017/149‑1 (MQ=255)                                           aaaGGCTTCTCGGATGCCAGCCCGGATGCCGAGGGCGGCCTGATGCTGTTTCACACGTTCTGACAAAAAAGCCCCTGCGCCGGTCATTCCCTATGGAGAACG‑CCGGGgcagggg                                                                                                                                               <  8:26372‑M2/114‑8 (MQ=255)                                           aaaGGCTTCTCGGATGCCAGCCCGGATGCCGAGGGCGGCCTGATGCTGTTTCACACGTTCTGACAAAAAAGCCCCTGCGCCGGTCATTCCCTATGGAGAACG‑CCGGGgcagggg                                                                                                                                               >  7:26372‑M2/1‑107 (MQ=255)                                           aaaGGCTTCTCGGATGCCAGCCCGGATGCCGAGGGCGGCCTGATGCTGATTCACACGTTCTGACAAAAAAGCCCCTGCGCCGGTCATTCCCTATGGAGAACG‑CCGGGGCACGGGCTTTGCAGGCTTCAGCCGTTTTAGATGGGTTCAGc                                                                                                            >  1:232223/1‑149 (MQ=255)                                                cTTCTCGGATGCCAGCCCGGATGCCGAGGGCGGCCTGATGCTGTTTCACACGTTCTGACAAAAAAGCCCCTGCGCCGGTCATTCCCTATGGAGAACG‑CCGGGGCAGGGGCTTTGCAGGCTTCAGCCGTTTTAGATGGGTTCAGCCcaca                                                                                                       <  3:95109/149‑1 (MQ=255)                                                 ttCTCGGATGCCAGCCCGGATGCCGAGGGCGGCCTGATGCTGTTTGACACGTTCTGACAAAAAAGCCCCTGCGCCGGTCATTCCCTATGGAGAACG‑CCGGGGCAGGGGCTTTGCAGGCTTCAGCCGTTTTAGATGGGTTCAGCCCACAt                                                                                                      >  1:223415/1‑149 (MQ=255)                                                     cGGATGCCAGCCCGGATGCCGAGGGCGGCCTGATGCTGTTTCACACGTTCTGACAAAAAAGCCCCTGCGCCGGTCATTCCCTATGGAGAACG‑CCGGGGCAGGGGCTTTGCAGGCTTCAGCCGTTTTAGATGGGTTCAGCCCACATGTCg                                                                                                  >  2:41920/1‑149 (MQ=255)                                                                      gCCGAGGGCGGCCTGATGCTGTTTCACACGTTCTGACAAAAAAGCCCCTGCGCCGGTCATTCCCTATGGAGAACG‑CCGGGGCAGGGGCTTTGCAGGCTTCAGCCGTTTTAGATGGGTTCAGCCCACATGTCGTACTCGTCGGCATccac                                                                                 >  5:210480/1‑149 (MQ=255)                                                                         gAGGGCGGCCTGATGCTGTTTCACACGTTCTGACAAAAAAGCCCCTGCGCCGGTCATTCCCTATGGAGAACG‑CCGGGGCAGGGGCTTTGCAGGCTTCAGCCGTTTTAGATGGGTTCAGCCCACATGTCGTACTCGTCGGCATCcaccac                                                                              <  2:8002/149‑1 (MQ=255)                                                                                    gATGCTGTTTCACACGTTCTGACAAAAAAGCCCCTGCGCCGGTCATTCCCTATGGAGAACG‑CCGGGGCAGGGGCTTTGCAGGCTTCAGCCGTTTTAGATGGGTTCAGCCCACATGTCGTACTCGTCGGCATCCACCACACGGCAACGCa                                                                   >  7:187449/1‑149 (MQ=255)                                                                                       gCTGTTTCACACGTTCTGACAAAAAAGCCCCTGCGCCGGTCATTCCCTATGGAGAACG‑CCGGGGCAGGGGCTTTGCAGGCTTCAGCCGTTTTAGATGGGTTCAGCCCACATGTCGTACTCGTCGGCATCCACCACACGGCAACGCACtt                                                                >  6:33851/1‑149 (MQ=255)                                                                                          gTTTCACACGTTCTGACAAAAAAGCCCCTGCGCCGGTCATTCCCTATGGAGAACG‑CCGGGGCAGGGGCTTTGCAGGCTTCAGCCGTTTTAGATGGGTTCa                                                                                                              >  1:207438/1‑100 (MQ=255)                                                                                          gTTTCACACGTTCTGACAAAAAAGCCCCTGCGCCGGTCATTCCCTATGGAGAACG‑CCGGGGCAGGGGCTTTGCAGGCTTCAGCCGTTTTAGATGGGTTCa                                                                                                              <  2:207438/100‑1 (MQ=255)                                                                                           tttCACACGTTCTGACAAAAAAGCCCCTGCGCCGGTCATTCCCTATGGAGAACG‑CCGGGGCACGGGCTTTGCAGCCTTCAGCCGTTTTAGATGGGTTCAGCCCACATGTCGTACTCGACGGCATCCACCACACGGCAACGCACTTTgac                                                            >  2:55955/1‑147 (MQ=255)                                                                                               acacGTTCTGACAAAAAAGCCCCTGCGCCGGTCATTCCCTATGGAGAACG‑CCGGGGCAGGGGCTTTGCAGGCTTCAGCCGTTTTAGATGGGTTCAGCCCACATGTCGTACTCGTCGGCATCCACCACACGGCAACGCACTTTGTCGCCt                                                        >  1:84063/1‑149 (MQ=255)                                                                                                    ttCTGACAAAAAAGCCCCTGCGCCGGTCATTCCCTATGGAGAACG‑CCGGGGCAGGGGCTTTGCAGGCTTCAGCCGTTTTAGATGGGTTCAGCCCACATGTCGTACTCGTCGGCATCCACCACACGGCAACGCACTTTGTCGCCTGGCtt                                                   <  4:33511/149‑1 (MQ=255)                                                                                                    ttCTGACAAAAAAGCCCCTGCGCCGGTCATTCCCTATGGAGAACG‑CCGGGGCAGGGGCTTTGCAGGCTTCAGCCGTTTTAGATGGGTTCAGCCCACATGTCGTACTCGTCGGCATCCACCACACGGCAACGCACTTTGTCGCCAGGCtt                                                   >  5:319557/1‑149 (MQ=255)                                                                                                           aaaaaaGCCCCTGCGCCGGTCATTCCGTATGGAGAACG‑CCGGGGCAGGGGCTTTGCAGGCTTCAGCCGTTTTAGATGGGTTCAGCCCACATGTCGTACTCGTCGGCATCCACCACACGGCAACGCACTTTGTCGCCTGGCTTGaaa                                               >  1:4326/1‑146 (MQ=255)                                                                                                           aaaaaaGCCCCTGCGCCGGTCATTCCCTATGGAGAACG‑CCGGGGCAGGGGCTTTGCAGGCTTCAGCCGTTTTAGATGGGTTCAGCCCACATGTCGTACTCGTCGGCATCCACCACACGGCAACGCACt                                                                 >  2:55860/1‑128 (MQ=255)                                                                                                           aaaaaaGCCCCTGCGCCGGTCATTCCCTATGGAGAACG‑CCGGGGCAGGGGCTTTGCAGGCTTCAGCCGTTTTAGATGGGTTCAGCCCACATGTCGTACTCGTCGGCATCCACCACACGGCAACGCACTTTGTCGCCTGGCTTGaaa                                               <  2:4326/146‑1 (MQ=255)                                                                                                           aaaaaaGCCCCTGCGCCGGTCATTCCCTATGGAGAACG‑CCGGGGCAGGGGCTTTGCAGGCTTCAGCCGTTTTAGATGGGTTCAGCCCACATGTCGTACTCGTCGGCATCCACCACACGGCAACGCACTTTGTCGCCTGGCTTGAAACCa                                            >  2:314759/1‑149 (MQ=255)                                                                                                             aaaaGCCCCTGCGCCGGTCATTCCCTATGGAGAACG‑CCGGGGCAGGGGCTTTGCAGGCTTCAGCCGTTTTAGATGGGTTCAGCCCACATGTCGTACTCGTCGGCATCCACCACACGGCAACGCACTTTGTCGCCTGGCTTGAAACCATg                                          <  6:210480/149‑1 (MQ=255)                                                                                                             aaaaGCCCCTGCGCCGGTCATTCCCTATGGAGAACG‑CCGGGGCAGGGGCTTTGCAGGCTTCAGCCGTTTTAGATGGGTTCAGCCCACATGTCGTACTCGTCGGCATCCACCACACGGCAACGCACTTTGTCGCCTGGCTTGAAACCATg                                          <  8:187449/149‑1 (MQ=255)                                                                                                              aaaGCCCCTGCGCCGGTCATTCCCTATGGAGAACG‑CCGGGGCAGGGGCTTTGCAGGCTTCAGCCGTTTTAGATGGGTTCAGCCCACATGTCGTACtcgt                                                                                           >  3:244476/1‑99 (MQ=255)                                                                                                              aaaGCCCCTGCGCCGGTCATTCCCTATGGAGAACG‑CCGGGGCAGGGGCTTTGCAGGCTTCAGCCGTTTTAGATGGGTTCAGCCCACATGTCGTACtcgt                                                                                           <  4:244476/99‑1 (MQ=255)                                                                                                              aaaGCCCCTGCCCCGG‑CGTTCTCCATAGGGAATGACCGGCGCAGGGGCTTTGCAGGCTTCAGCCGTTTTAGATGGGTTCAGCCCACATGTCGTACTCGTCGGCATCCACCACACGGCAACGCACTTTGTCGCCTGGCTTGAAACCATgg                                         >  3:143880/1‑149 (MQ=25)                                                                                                                aGCCCCTGCGCCGGTCATTCCCTATGGAGAACG‑CCGGGgcagg                                                                                                                                                 <  1:46696‑M2/43‑6 (MQ=255)                                                                                                                aGCCCCTGCGCCGGTCATTCCCTATGGAGAACG‑CCGGGgcagg                                                                                                                                                 >  2:46696‑M2/1‑38 (MQ=255)                                                                                                                aGCCCCTGCGCCGGTCATTCCCTATGGAGAACG‑CCGGGGCAGGGGCTTTGCAGGCTTCAGCCGTTTTAGATGGGTTCAGCCCACATGTCGTACTCGTCGGCATCCACCACACGGCAACGCACTTTGTCGCCTGGCTTGAAACCATGGTc                                       >  8:155074/1‑149 (MQ=255)                                                                                                                   cccTGCGCCGGTCATTCCCTATGGAGAACG‑CCGGGgcaggggcttttttgtcagaacgtgtgaaacagcatcaggccgccctcggcatccgggctggcatccgagaagcctttgactgcatagagttggactttccactgcgggttgag                                    <  2:97152‑M2/149‑115 (MQ=255)                                                                                                                   cccTGCGCCGGTCATTCCCTATGGAGAACG‑CCGGGGCAGGGGCTTTGCAGGCTTCAGCCGTTTTAGATGGGTTCAGCCCACATGTCGTACTCGTCGGCATCCACCACACGGCAACGCACTTTGTCGCCTGGCTTGAAACCATGGTCGc                                     >  5:273086/1‑148 (MQ=255)                                                                                                                    ccTGCGCCGGTCATTCCCTATGGAGAACG‑CCGGGgcaggggcttttttgtcagaacgtgtgaaacagcatcaggccgccctcggcatccgggctggcatccgagaagcctttgactgcatagagttggactttccactgcg                                           <  1:195758‑M2/141‑108 (MQ=255)                                                                                                                    ccTGCGCCGGTCATTCCCTATGGAGAACG‑CCGGGgcaggggcttttttgtcagaacgtgtgaaacagcatcaggccgccctcggcatccgggctggcatccgagaagcctttgactgcatagagttggactttccactgcg                                           >  2:195758‑M2/1‑34 (MQ=255)                                                                                                                        cgcCGGTCATTCCCTATGGAGAACG‑CCGGGGCAGGGGCTTTGCAGGCTTCAGCCGTTTTAGATGGGTTCAGCCCACATGTCGTACTCGTCGGCATCCACCACACGGCAACGCACTTTGTCGCCTGGCTTGAAACCATGGTCGCCATc                                 <  4:170580/147‑1 (MQ=255)                                                                                                                           cgttCATTCCCTATGCAGAACG‑CCGGGGCAGGGGCTTTGCAGGCTTCAGCCGTTTTAGATGGGGTCAGCCCACATGTCGTACTCGTCGGCATCCACCACACGGCATCGCACTTTGTCGCCTGGCTTGAAACCATGGTCGCCATCGATGa                            <  1:55955/146‑1 (MQ=255)                                                                                                                                aTTCCCTATGGAGAACG‑CCGGGGCAGGGGCTTTGCAGGCTTCAGCCGTTTTAGATGGGTTCAGCCCACATGTCGTACTCGTCGGCATCCACCACACGGCAACGCACTTTGTCGCCTGGCTTGAAACCATGGTCGCCATCGATGAACACg                       <  5:33851/149‑1 (MQ=255)                                                                                                                                      tATGGAGAACG‑CCGGGGCAGGGGCTTTGCAGGCTTCAGCCGTTTTAGATGGGTTCAGCCCACATGTCGTACTCGTCGGCATCCACCACACGGCAACGCACTTTGTCGCCTGGCTTGAAACCATGGTCGCCTTCGATGAACACGCTGCCg                 >  5:9838/1‑149 (MQ=255)                                                                                                                                           agaACG‑CCGGGGCAGGGGCTTTGCAGGCTTCAGCCGTTTTAGATGGGTTCAGCCCACATGTCGTACTCGTCGGCATCCACCACACGGCAACGCACTTTGTCGCCTGGCTTGAAACCATGGTCGCCATCGATGAACACGCTGCCGTCGAt            >  1:208337/1‑149 (MQ=255)                                                                                                                                           agaACG‑CCGGGGCAGGGGCTTTGCAGGCTTCAGCCGTTTTAGATGGGTTCAGCCCACATGTCGTACTCGTCGGCATCCACCACACGGCAACGCACTTTGTCGCCTGGCTTGAAACCATGGTCGCCATCGATGAACACGCTGCCGTCGAt            >  2:254029/1‑149 (MQ=255)                                                                                                                                             aaCG‑CCGGGGCAGGGGCTTTGCAGGCTTCAGCCGTTTTAGATGGGTTCAGCCCACATGTCGTACTCGTCGGCATCCACCACACGGCAACGCACTTTGTCGCCTGGCTTGAAACCATGGTCGCCATCGATGAACACGCTGCCGTCGAttt          <  2:223415/149‑1 (MQ=255)                                                                                                                                               cG‑CCGGGGCAGGGGCTTTGCAGGCTTCAGCCGTTTTAGATGGGTTCAGCCCACATGTCGTACTCGTCGGCATCCACCACACGGCAACGCACTTTGTCGCCTGGCTTGAAACCATGGTCGCCATCGATGAACACGCTGCCGTCGATTTcc        <  5:141818/149‑1 (MQ=255)                                                                                                                                               cG‑CCGGGGCAGGGGCTTTGCAGGCTTCAGCCGTTTTAGATGGGTTCAGCCCACATGTCGTACTCGTCGGCATCCACCACACGGCAACGCACTTTGTCGCCTGGCTTGAAACCATGGTCGCCATCGATGAACACGCTGCCGTCGATTTcc        <  1:314759/149‑1 (MQ=255)                                                                                                                                                  ccGGGGCAGGGGCTTTGCAGGCTTGAGCCGTTTTAGATGGGTTCTGCCCACATGTCGTACTCGTCGGCATCCAGCACACGGCAACGGACTTTGTCGGCTGGCTTGAAACCATGGTCGCCATCGATGAACACGCTGCCGTCGATTTCCgg      <  2:232223/149‑1 (MQ=255)                                                                                                                                                   cgcggCAGGGGCTTTGCAGGCTTCAGCCGTTTTAGATGGGTTCAGCCCACATGTCGTACTCGTCGGCATCCACCACACGGCAACGCACTTTGTCGCCTGGCTTGAAACCATGGTCGCCATCGATGAACACGCTGCCGTCGATTTCCGGt     >  2:6941/4‑149 (MQ=255)                                                                                                                                                   cGGGGCAGGGGCTTTGCAGGCTTCAGCCGTTTTAGATGGGTTCAGCCCACATGTCGTACTCGTCGGCATCCACCACACGGCAACGCACTTTGTCGCCTGGCTTGAAACCATGGTCGCCATCGATGAACACGCTGCCGTCGATTTCCGGt     <  2:208337/149‑1 (MQ=255)                                                                                                                                                   cGGGGCAGGGGCTTTGCAGGCTTCAGCCGTTTTAGATGGGTTCAGCCCACATGTCGTACTCGTCGGCATCCACCACACGGCAACGCACTTTGTCGCCTGGCTTGAAACCATGGTCGCCATCGATGAACACGCTGCCGTCGATTTCCGGt     <  1:41920/149‑1 (MQ=255)                                                                                                                                                      ggCAGGGGCTTTGCAGGCTTCAGCCGTTTTAGATGGGTTCAGCCCACATGTCGTACTCGTCGGCATCCACCACACGGCAACGCACTTTGTCGCCTGGCTTGAAACCATGGTCGCCATCGATGAACACGCTGCCGTCGATTTCCGGTGCa  <  7:155074/149‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                     CACAAGCTCAACCCGCAGTGGAAAGTCCAACTCTATGCAGTCAAAGGCTTCTCGGATGCCAGCCCGGATGCCGAGGGCGGCCTGATGCTGTTTCACACGTTCTGACAAAAAAGCCCCTGCGCCGGTCATTCCCTATGGAGAACG‑CCGGGGCAGGGGCTTTGCAGGCTTCAGCCGTTTTAGATGGGTTCAGCCCACATGTCGTACTCGTCGGCATCCACCACACGGCAACGCACTTTGTCGCCTGGCTTGAAACCATGGTCGCCATCGATGAACACGCTGCCGTCGATTTCCGGTGCA  >  NC_002947/1371623‑1371919

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.