| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1388256 = | 47 (0.950) | 3 (0.070) | 3/238 | NT | 6.8% | coding (234/594 nt) | PP_1209 | cold‑shock protein |
| ? | NC_002947 | 1388304 = | 38 (0.830) | coding (186/594 nt) | PP_1209 | cold‑shock protein | |||||
CACCCTTCCTGCAACAACCCGACGCGGTCTACCTGGCCCTGCTCGGCCTGCTCAACCTTGTGCTGGCCCCGGTCGTGCCGCTGTATCATCGCGGCGCGCGGCAACAACTGCAGCACCTGGCCTGCGCCCTGCTGGTAGTCGCCGTCGTGCTGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1388410‑1388256‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgctgcagTTGTTGCCGCGCGCCGCGATGATACAGCGGCACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAGGGCCAGGTAGACCGCGTCGGGTTGTTGCAGGAAGGGTGTCGCATCGGTTTTCAGGCTGGGTATGAGCGATAGCAGCAAA > NC_002947/1388304‑1388451 CACCCTTCCTGCAACAACCCGACGCGGTCTACCTGGCCCTGCTCGGCCTGCTCAACCTTGTGCTGGCCCCGCTCGTGCCGCTGTATCATCGCGGCGCGCGGCAACAACTGCAGCACCTGGCCTGCGCCCTGCTGGTAGTCGCCGACGTG > 1:225991/1‑149 CCTTCCTGCAACAACCCGACGCGGTCTACCTGGCCCTGCTCGGCCTGCTCAACCTTGTGCTGGCCCCGGTCGTGCCGCTGTATCATCGCGGCGCGCGGCAACAACTGCAGCACCTGGCCTGCGCCCTGCTGGTAGTCGCCGTCGTGCTG > 3:39853/1‑149 CTTCCTGCAACAACCCGACGCGGTCTACCTGGCCCTGCTCGGCCTGCTCAACCTTGTGCTGGCCCCGGTCGTGCCGCTGTATCATCGCGGCGCGCGGCAACAACTGCAGCACCTGGCCTGCGCCCTGCTGGTAGTCGCCGTCGTGCTGC < 7:98488/149‑1 CTGCAGCACCTGGCCTGCGCCCTGCTGGTAGTCGCCGTCGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGCACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGC > 7:161724/1‑115 CTGCAGCACCTGGCCTGCGCCCTGCTGGTAGTCGCCGTCGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGCACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGC < 8:161724/115‑1 TGCAGCACCTGGCCTGCGCCCTGCTGGTAGTCGCCGTCGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGCACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAGGGCCAGGTAGACCGCGTCGGGTTGTTGCAGG > 2:68344/1‑147 GTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGCACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAGGGCCAGGTAGACCGCGTCGGGTTGTTGCAGGAAGGGTGTCGCATCGGTTTTC > 1:196237/1‑130 GTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGCACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAGGGCCAGGTAGACCGCGTCGGGTTGTTGCAGGAAGGGTGTCGCATCGGTTTTC < 2:196237/130‑1 TGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGCACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAGGGCCAGGTAGACCGCGTCGGGTTGTTGCAGGAAGGGTGTCGCATCGGTTTTCAGGCTGGGTATGAGCGATAGCAG > 5:205083/1‑149 AGTTGTTGCCGCGCGCCGCGATGATACAGCGGCACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAGGGCCAGGTAGACCGCGTCGGGTTGTTGCAGGAAGGGTGTCGCATCGGTTTTCAGGCTGGGTATGAGCGATAGCAGCA > 2:304821/1‑148 AGTTGTTGCCGCGCGCCGCGATGATACAGCGGCACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAGGGCCAGGTAGACCGCGTCGGGTTGTTGCAGGAAGGGTGTCGCATCGGTTTTCAGGCTGGGTATGAGCGATAGCAGCA > 3:13564/1‑148 GTTGTTGCCGCGCGCCGCGATGATACAGCGGCACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAGGGCCAGGTAGACCGCGTCGGGTTGTTGCAGGAAGGGTGTCGCATCGGTTTTCAGGCTGGGTATGAGCGATAGCAGCAAA < 4:13564/149‑1 CACCCTTCCTGCAACAACCCGACGCGGTCTACCTGGCCCTGCTCGGCCTGCTCAACCTTGTGCTGGCCCCGGTCGTGCCGCTGTATCATCGCGGCGCGCGGCAACAACTGCAGCACCTGGCCTGCGCCCTGCTGGTAGTCGCCGTCGTGCTGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1388410‑1388256‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgctgcagTTGTTGCCGCGCGCCGCGATGATACAGCGGCACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAGGGCCAGGTAGACCGCGTCGGGTTGTTGCAGGAAGGGTGTCGCATCGGTTTTCAGGCTGGGTATGAGCGATAGCAGCAAA > NC_002947/1388304‑1388451 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |