New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1388256 =	47 (0.950)	3 (0.070)	3/238	NT	6.8%	coding (234/594 nt)	PP_1209	cold‑shock protein
	?	NC_002947	1388304 =	38 (0.830)					coding (186/594 nt)	PP_1209	cold‑shock protein

CGGGCAAAGCCCACGGCCAGATGCACGGCCACGGCCAGCGCCGCACACACCAGGGCTGCCAGGTTGCCCATTTCGGGGCGGGCCAGTAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAGGGCCAGGTAGACCGCGTCGGGTTGTTGCAGGAAGGGTGTCGCATCGGTTTTCAGGCTGGGTATGAGCGATAGCAGCAAA  >  NC_002947/1388158‑1388451                                                                                                                                                   |                                                                                                                                                     cGGGCAAAGCCCACGGCCAGATGCACGGCCACGGCCAGCGCCGCACACACCAGGGCTGCCAGGTTGCCCATTTCGGGGCGGGCCAGTAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAgtt                                                                                                                                                     <  5:84648/148‑1 (MQ=255)   ggCAAAGCCCACGGCCAGATGCACGGCCACGGCCAGCGCCGCACACACCAGGGCTGCCAGGTTGCCCATTTCGGGGCGGGCCAGTAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAgttgtt                                                                                                                                                  <  8:902/149‑1 (MQ=255)    gCAAAGCCCACGGCCAGATGCACGGCCACGGCCAGCGCCGCACACACCAGGGCTGCCAGGGTGCCCATTTCGGGGCGGGCCAGTAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGttgttg                                                                                                                                                 <  5:237941/149‑1 (MQ=255)            cACGGCCAGATGCACGGCCACGGCCAGCGCCGCACACACCAGGGCTGCCAGGTTGCCCATTTCGGGGCGGGCCAGTAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCgcgcgc                                                                                                                                         >  2:225991/1‑149 (MQ=255)                     aTGCACGGCCACGGCCAGCGCCGCACACACCAGGGCTGCCAGGTTGCCCATTTCGGGGCGGGCCAGTAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCgatga                                                                                                                                 >  1:247100/1‑148 (MQ=255)                       gCACGGCCACGGCCAGCGCCGCACACACCAGGGCTGCCAGGTTGCCCATTTCGGGGCGGGCCAGTAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATa                                                                                                                               >  5:217071/1‑148 (MQ=255)                         acggccacggccAGCGCCGCACACACCAGGGCTGCCAGGTTGCCCATTTCGGGGCGGGCCAGTAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAg                                                                                                                            >  2:169300/1‑149 (MQ=255)                                      gcgcCGCACACACCAGGGCTGCCAGGTTGCCCATTTCGGGGCGGGCCAGTAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCggg                                                                                                              <  2:247100/149‑1 (MQ=255)                                            cacacaCCAGGGCTGCCAGGTTGCCCATTTCGGGGCGGGCCAGTAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAg                                                                                                         >  4:249373/1‑148 (MQ=255)                                                 acCAGGGCTGCCAGGTTGCCCATTTCGGGGCGGGCCAGTAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACAAg                                                                                                   >  8:52308/1‑149 (MQ=255)                                                    aGGGCTGCCAGGTTGCCCATTTCGGGGCGGGCCAGTAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGAcc                                                                                                                 <  8:143607/132‑1 (MQ=255)                                                    aGGGCTGCCAGGTTGCCCATTTCGGGGCGGGCCAGTAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGAcc                                                                                                                 >  7:143607/1‑132 (MQ=255)                                                     gggCTGCCAGGTTGCCCATTTCGGGGCGGGCCAGTAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACAAGGTTg                                                                                               <  2:70434/149‑1 (MQ=255)                                                           ccAGGTTGCCCATTTCGGGGCGGGCCAGTAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCgg                                                                                                               >  1:196461/1‑127 (MQ=255)                                                           ccAGGTTGCCCATTTCGGGGCGGGCCAGTAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCgg                                                                                                               <  2:196461/127‑1 (MQ=255)                                                           ccAGGTTGCCCATTTCGGGGCGGGCCAGTAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGcac                                                                                                      <  6:206280/136‑1 (MQ=255)                                                           ccAGGTTGCCCATTTCGGGGCGGGCCAGTAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGcac                                                                                                      >  5:206280/1‑136 (MQ=255)                                                               gTTGCCCATTTCGGGGCGGGCCAGTAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGCGGCCAGCACAAGGTTGAGCAGGCCGa                                                                                     <  1:169300/149‑1 (MQ=255)                                                                ttGCCCATTTCGGGGCGGGCCAGTAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAgttgtt                                                                                                                                                  >  3:186634/1‑88 (MQ=255)                                                                ttGCCCATTTCGGGGCGGGCCAGTAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAgttgtt                                                                                                                                                  <  4:186634/88‑1 (MQ=255)                                                                    ccATTTCGGGGCGGGCCAGTAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAgg                                                                                >  2:165430/1‑149 (MQ=255)                                                                    ccATTTCGGGGCGGGCCAGTAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAgg                                                                                >  2:204409/1‑149 (MQ=255)                                                                    ccATTTCGGGGCGGGCCAGTAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAgg                                                                                >  8:167468/1‑149 (MQ=255)                                                                     cATTTCGGGGCGGGCCAGTAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAggg                                                                               >  2:158837/1‑149 (MQ=255)                                                                           ggggCGGGCCAGTAGCGTCCGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAGGGCCAgg                                                                          <  7:218581/148‑1 (MQ=255)                                                                           ggggCGGGCCAGTAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAGGGCCAgg                                                                          <  3:249373/148‑1 (MQ=255)                                                                           ggggCGGGCCAGTAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAGGGCCAGGt                                                                         <  7:52308/149‑1 (MQ=255)                                                                            gggcgggcCAGTAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACaa                                                                                                    <  7:5853/121‑1 (MQ=255)                                                                            gggcgggcCAGTAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACaa                                                                                                    >  8:5853/1‑121 (MQ=255)                                                                            gggcgggcCAGACGCGTCCGGGTCTGCAGCACGACGGCTACTACCCGCAGGGCGCAGGCCAGGGGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAGGGCCAGGTa                                                                        <  1:310465/149‑1 (MQ=255)                                                                             ggcgggcCAGTAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGCAACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAGGGCCAGGTa                                                                        <  1:69422/149‑1 (MQ=255)                                                                                       tAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAGGGCCAGGTAGACCGCGTCgg                                                             >  4:39853/1‑149 (MQ=255)                                                                                                   ctgcagcacctggcctgcgccctgctggtagtcgccgtcgtgctgcagTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGc                                                                                   <  8:161724‑M2/67‑1 (MQ=255)                                                                                                   ctgcagcacctggcctgcgccctgctggtagtcgccgtcgtgctgcagTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGc                                                                                   >  7:161724‑M2/49‑115 (MQ=255)                                                                                                    tgcagcacctggcctgcgccctgctggtagtcgccgtcgtgctgcagTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAGGGCCAGGTAGACCGCGTCGGGTTGTTGCAgg                                                  >  2:68344‑M2/48‑147 (MQ=255)                                                                                                     GCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAGGGCCAGGTAGACCGCGTCGGGTTGTTGCAGGAAg                                               <  7:98488‑M1/149‑1 (MQ=255)                                                                                                      CAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAGGGCCAGGTAGACCGCGTCGGGTTGTTGCAGGAAgg                                              >  3:39853‑M1/1‑149 (MQ=255)                                                                                                         CACGTCGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGAGCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAGGGCCAGGTAGACCGCGTCGGGTTGTTGCAGGAAGGgtg                                           >  1:225991‑M1/1‑149 (MQ=255)                                                                                                                    cTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAGGGCCAGGTAGACCGCGTCGGGTTGTTGCAGGAAGGGTGTCGCATCGGtt                                <  1:204409/149‑1 (MQ=255)                                                                                                                     tACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAGGGCCAGGTAGACCGCGTCGGGTTGTTGCAGGAAGGGTGTCGCATCGGttt                               >  5:271741/1‑149 (MQ=255)                                                                                                                       ccAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAGGGCCAGGTAGACCGCGTCGGGTTGTTGCAGGAAGGGTGTCGCATCGGtttt                              >  6:115149/1‑148 (MQ=255)                                                                                                                       ccAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAGGGCCAGGTAGACCGCGTCGGGTTGTTGCAGGAAGGGTGTCGCATCGGttt                               <  6:217071/147‑1 (MQ=255)                                                                                                                       ccAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAGGGCCAGGTAGACCGCGTCGGGTTGTTGCAGGAAGGGTGTCGCATCGGt                                 <  7:216958/145‑1 (MQ=255)                                                                                                                       ccAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAGGGCCAGGTAGACCGCGTCGGGTTGTTGCAGGAAGGGTGTCGCATCGGt                                 >  8:216958/1‑145 (MQ=255)                                                                                                                        cagcagGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACAAGGTTGAGCAGGTCGAGCAGGGCCAGGTTGACCGCGTCGGGTTGTTGCAGGAAGGGTGTCGCATCGGTTTTcc                            >  6:207829/1‑148 (MQ=255)                                                                                                                              ggCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAGGGCCAGGTAGACCGCGTCGGGTTGTTGCAGGAAGGGTGTCGCATCGGTTTTCAGGCTgg                      <  7:167468/149‑1 (MQ=255)                                                                                                                              ggCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAGGGCCAGGTAGACCGCGTCGGGTTGTTGCAGGAAGGGTGTCGCATCGGTTTACAGGCTgg                      <  1:165430/149‑1 (MQ=255)                                                                                                                                    ggCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAGGGCCAGGTAGACCGCGTCGGGTTGTTGCAGGAAGGGTGTCGCATCGGTTTTCAGGCTGGGTATGa                <  5:115149/149‑1 (MQ=255)                                                                                                                                          gtgctgcagTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAGGGCCAGGTAGACCGCGTCGGGTTGTTGCAGGAAGGGTGTCGCATCGGTTTTc                             <  2:196237‑M2/121‑1 (MQ=255)                                                                                                                                          gtgctgcagTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAGGGCCAGGTAGACCGCGTCGGGTTGTTGCAGGAAGGGTGTCGCATCGGTTTTc                             >  1:196237‑M2/10‑130 (MQ=255)                                                                                                                                              tgcagTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAGGGCCAGGTAGACCGCGTCGGGTTGTTGCAGGAAGGGTGTCGCATCGGTTTTCAGGCTGGGTATGAGCGATagcag      >  5:205083‑M2/6‑149 (MQ=255)                                                                                                                                                 agTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAGGGCCAGGTAGACCGCGTCGGGTTGTTGCAGGAAGGGTGTCGCATCGGTTTTCAGGCTGGGTATGAGCGATAgcagca    >  3:13564‑M2/3‑148 (MQ=255)                                                                                                                                                 agTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAGGGCCAGGTAGACCGCGTCGGGTTGTTGCAGGAAGGGTGTCGCATCGGTTTTCAGGCTGGGTATGAGCGATAgcagca    >  2:304821‑M2/3‑148 (MQ=255)                                                                                                                                                  gTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAGGGCCAGGTAGACCGCGTCGGGTTGTTGCAGGAAGGGTGTCGCATCGGTTTTCAGGCTGGGTATGAGCGATAGCAGCaaa  <  4:13564‑M2/148‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                     CGGGCAAAGCCCACGGCCAGATGCACGGCCACGGCCAGCGCCGCACACACCAGGGCTGCCAGGTTGCCCATTTCGGGGCGGGCCAGTAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAGGGCCAGGTAGACCGCGTCGGGTTGTTGCAGGAAGGGTGTCGCATCGGTTTTCAGGCTGGGTATGAGCGATAGCAGCAAA  >  NC_002947/1388158‑1388451

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.