New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1388256 =	47 (0.950)	3 (0.070)	3/238	NT	6.8%	coding (234/594 nt)	PP_1209	cold‑shock protein
	?	NC_002947	1388304 =	38 (0.830)					coding (186/594 nt)	PP_1209	cold‑shock protein

GCCGGCATCTTGTGCCACGTGTTGAGTGCCGCGTGCCTTGCGCGTGCTGCGGGCAAAGCCCACGGCCAGATGCACGGCCACGGCCAGCGCCGCACACACCAGGGCTGCCAGGTTGCCCATTTCGGGGCGGGCCAG‑TAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAGGGCCAGGTAGACCGCGTCGG  >  NC_002947/1388109‑1388392                                                                                                                                                     |                                                                                                                                          tttgctgctatcgctcatacccagcctgaaaaccgatgcgacacccttcctgcaacaacccgacgcggtctacctggccctgctcggcctgctcaaccttgtgctggccccggtcgtgccgctgtatcatcgcggcgcgcggcaacaac                                                                                                                                           <  4:13564‑M1/1‑1 (MQ=255)   tgctgctatcgctcatacccagcctgaaaaccgatgcgacacccttcctgcaacaacccgacgcggtctacctggccctgctcggcctgctcaaccttgtgctggccccggtcgtgccgctgtatcatcgcggcgcgcggcaacaaCt                                                                                                                                          >  3:13564‑M1/147‑148 (MQ=255)   tgctgctatcgctcatacccagcctgaaaaccgatgcgacacccttcctgcaacaacccgacgcggtctacctggccctgctcggcctgctcaaccttgtgctggccccggtcgtgccgctgtatcatcgcggcgcgcggcaacaaCt                                                                                                                                          >  2:304821‑M1/147‑148 (MQ=255)   cGGCATCTTGTGCCACGTGTTGAGTGCCGCGTGCCTTGCGCGTGCTGCGGGCAAAGCCCACGGCCAGATGCACGGCCACGGCCAGCGCCGCACACACCAGGGCTGCCAGGTTGCCCATTTCGGGGCGGGCCAG‑TAGCGTCAGGGTCTg                                                                                                                                         >  2:82304/1‑148 (MQ=255)     ctgctatcgctcatacccagcctgaaaaccgatgcgacacccttcctgcaacaacccgacgcggtctacctggccctgctcggcctgctcaaccttgtgctggccccggtcgtgccgctgtatcatcgcggcgcgcggcaacaaCTgca                                                                                                                                       >  5:205083‑M1/145‑149 (MQ=255)                cACGTGTTGAGTGCCGCGTGCCTTGCGCGTGCTGCGGGCAAAGCCCACGGCCAGATGCACGGCCACGGCCAGCGCCGCACACACCAGGGCTGCCAGGTTGCCCATTTCGGGGCGGGCCAG‑TAGCGTCAGGGTCTGCAGCac                                                                                                                                   >  4:219414/1‑141 (MQ=255)                cACGTGTTGAGTGCCGCGTGCCTTGCGCGTGCTGCGGGCAAAGCCCACGGCCAGATGCACGGCCACGGCCAGCGCCGCACACACCAGGGCTGCCAGGTTGCCCATTTCGGGGCGGGCCAG‑TAGCGTCAGGGTCTGCAGCac                                                                                                                                   <  3:219414/141‑1 (MQ=255)                 aCGTGTTGAGTGCCGCGTGCCTTGCGCGTGCTGCGGGCAAAGCCCACGGCCAGATGCACGGCCACGGCCAGCGCCGCACACACCAGGGCTGCCAGGTTGCCCATTTCGGGGCGGGCCAG‑TAGCGTCAGGGTCTGCAGCACGACGGCGAc                                                                                                                          >  2:19042/1‑149 (MQ=255)                   gtcttGAGGGCCGCGTGCCTTGCGCGTGCTTCGGGCAAAGCCCACGGCCAGATGCACGGCCACGGCCAGCGCCGCACACACCAGGGCTGCCAGGTTGACCATTTCGGGGCGGGCCAG‑TAGCGTCAGGGTCTGCAGCACGACGGCGACTa                                                                                                                        <  6:78582/146‑1 (MQ=255)                           tGCCGCGTGCCTTGCGCGTGCTGCGGGCAAAGCCCACGGCCAGATGCACGGCCACGGCCAGCGCCGCACACACCAGGGCTGCCAGGTTGCCCATTTCGGGGCGGGCCAG‑TAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAgg                                                                                                                <  8:257049/149‑1 (MQ=255)                            gaaaaccgatgcgacacccttcctgcaacaacccgacgcggtctacctggccctgctcggcctgctcaaccttgtgctggccccggtcgtgccgctgtatcatcgcggcgcgcggcaacaaCTGCAGCac                                                                                                                                   >  1:196237‑M1/122‑130 (MQ=255)                            gaaaaccgatgcgacacccttcctgcaacaacccgacgcggtctacctggccctgctcggcctgctcaaccttgtgctggccccggtcgtgccgctgtatcatcgcggcgcgcggcaacaaCTGCAGCac                                                                                                                                   <  2:196237‑M1/9‑1 (MQ=255)                                 gTGCCTTGCGCGTGCTGCGGGCAAAGCCCACGGCCAGATGCACGGCCACGGCCAGCGCCGCACACACCAGGGCTGCCAGGTTGCCCATTTCGGGGCGGGCCAG‑TAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAg                                                                                                          <  1:19042/149‑1 (MQ=255)                                  ggCCTTGCGCGGGCTGCGGGCAAAGCCCACGGCCAGATGCACGGCCACGGCCAGCGCCGCACACACCAGGGCTGCCAGGTTGCCCATTTCGGGGCGGGCCAG‑TAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAgg                                                                                                         <  7:273139/148‑1 (MQ=255)                                      ttGCGCGTGCTGCGGGCAAAGCCCACGGCCAGATGCACGGCCACGGCCAGCGCCGCACACACCAGGGCTGCCAGGTTGCCCATTTCGGGGCGGGCCAG‑TAGCGTCAGGGTCTgc                                                                                                                                        <  4:269218/114‑1 (MQ=255)                                      ttGCGCGTGCTGCGGGCAAAGCCCACGGCCAGATGCACGGCCACGGCCAGCGCCGCACACACCAGGGCTGCCAGGTTGCCCATTTCGGGGCGGGCCAG‑TAGCGTCAGGGTCTgc                                                                                                                                        >  3:269218/1‑114 (MQ=255)                                         cgcgTGCTGCGGGCAAAGCCCACGGCCAGATGCACGGCCACGGCCAGCGCCGCACACACCAGGGCTGCCAGGGTGCCCATTTCGGGGCGGGCCAGCTAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGt                                                                                                   <  1:82304/149‑1 (MQ=255)                                                 cctgcaacaacccgacgcggtctacctggccctgctcggcctgctcaaccttgtgctggccccggtcgtgccgctgtatcatcgcggcgcgcggcaacaaCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCa                                                                                             >  2:68344‑M1/101‑147 (MQ=255)                                                  cGGGCAAAGCCCACGGCCAGATGCACGGCCACGGCCAGCGCCGCACACACCAGGGCTGCCAGGTTGCCCATTTCGGGGCGGGCCAG‑TAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAgtt                                                                                          <  5:84648/148‑1 (MQ=255)                                                    ggCAAAGCCCACGGCCAGATGCACGGCCACGGCCAGCGCCGCACACACCAGGGCTGCCAGGTTGCCCATTTCGGGGCGGGCCAG‑TAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAgttgtt                                                                                       <  8:902/149‑1 (MQ=255)                                                     gCAAAGCCCACGGCCAGATGCACGGCCACGGCCAGCGCCGCACACACCAGGGCTGCCAGGTTGCCCATTTCGGGGCGGGCCAG‑TAGCGTCAGGGTCTGCAGCACGACGGCGACTACca                                                                                                                     >  3:238927/1‑118 (MQ=255)                                                     gCAAAGCCCACGGCCAGATGCACGGCCACGGCCAGCGCCGCACACACCAGGGCTGCCAGGTTGCCCATTTCGGGGCGGGCCAG‑TAGCGTCAGGGTCTGCAGCACGACGGCGACTACca                                                                                                                     <  4:238927/118‑1 (MQ=255)                                                     gCAAAGCCCACGGCCAGATGCACGGCCACGGCCAGCGCCGCACACACCAGGGCTGCCAGGGTGCCCATTTCGGGGCGGGCCAG‑TAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGttgttg                                                                                      <  5:237941/149‑1 (MQ=255)                                                            ccACGGCCAGATGCACGGCCACGGCCAGCGCCGCACACACCAGGGCTGCCAGGTTGCCCATTTCGGGGCGGGCCAG‑TAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAgg                                                                                                                >  6:69179/1‑116 (MQ=255)                                                            ccACGGCCAGATGCACGGCCACGGCCAGCGCCGCACACACCAGGGCTGCCAGGTTGCCCATTTCGGGGCGGGCCAG‑TAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCa                                                                                                           <  7:147593/121‑1 (MQ=255)                                                            ccACGGCCAGATGCACGGCCACGGCCAGCGCCGCACACACCAGGGCTGCCAGGTTGCCCATTTCGGGGCGGGCCAG‑TAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCa                                                                                                           >  8:147593/1‑121 (MQ=255)                                                             cACGGCCAGATGCACGGCCACGGCCAGCGCCGCACACACCAGGGCTGCCAGGTTGCCCATTTCGGGGCGGGCCAG‑TAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCgcgcgc                                                                              >  2:225991/1‑149 (MQ=255)                                                              aCGGCCAGATGCACGGCCACGGCCAGCGCCGCACACACCAGGGCTGCCAGGTTGCCCATTTCGGGGCGGGCCAG‑TAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAg                                                                                                          <  6:259317/120‑1 (MQ=255)                                                              aCGGCCAGATGCACGGCCACGGCCAGCGCCGCACACACCAGGGCTGCCAGGTTGCCCATTTCGGGGCGGGCCAG‑TAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAg                                                                                                          >  5:259317/1‑120 (MQ=255)                                                                      aTGCACGGCCACGGCCAGCGCCGCACACACCAGGGCTGCCAGGTTGCCCATTTCGGGGCGGGCCAG‑TAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCgatga                                                                      >  1:247100/1‑148 (MQ=255)                                                                        gCACGGCCACGGCCAGCGCCGCACACACCAGGGCTGCCAGGTTGCCCATTTCGGGGCGGGCCAG‑TAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATa                                                                    >  5:217071/1‑148 (MQ=255)                                                                          acggccacggccAGCGCCGCACACACCAGGGCTGCCAGGTTGCCCATTTCGGGGCGGGCCAG‑TAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAg                                                                 >  2:169300/1‑149 (MQ=255)                                                                                  gctcggcctgctcaaccttgtgctggccccggtcgtgccgctgtatcatcgcggcgcgcggcaacaaCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAg                                                                                            >  7:161724‑M1/68‑115 (MQ=255)                                                                                  gctcggcctgctcaaccttgtgctggccccggtcgtgccgctgtatcatcgcggcgcgcggcaacaaCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAg                                                                                            <  8:161724‑M1/48‑1 (MQ=255)                                                                                       gcgcCGCACACACCAGGGCTGCCAGGTTGCCCATTTCGGGGCGGGCCAG‑TAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCggg                                                   <  2:247100/149‑1 (MQ=255)                                                                                             cacacaCCAGGGCTGCCAGGTTGCCCATTTCGGGGCGGGCCAG‑TAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAg                                              >  4:249373/1‑148 (MQ=255)                                                                                                  acCAGGGCTGCCAGGTTGCCCATTTCGGGGCGGGCCAG‑TAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACAAg                                        >  8:52308/1‑149 (MQ=255)                                                                                                     aGGGCTGCCAGGTTGCCCATTTCGGGGCGGGCCAG‑TAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGAcc                                                      >  7:143607/1‑132 (MQ=255)                                                                                                     aGGGCTGCCAGGTTGCCCATTTCGGGGCGGGCCAG‑TAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGAcc                                                      <  8:143607/132‑1 (MQ=255)                                                                                                      gggCTGCCAGGTTGCCCATTTCGGGGCGGGCCAG‑TAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACAAGGTTg                                    <  2:70434/149‑1 (MQ=255)                                                                                                            ccAGGTTGCCCATTTCGGGGCGGGCCAG‑TAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCgg                                                    <  2:196461/127‑1 (MQ=255)                                                                                                            ccAGGTTGCCCATTTCGGGGCGGGCCAG‑TAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCgg                                                    >  1:196461/1‑127 (MQ=255)                                                                                                            ccAGGTTGCCCATTTCGGGGCGGGCCAG‑TAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGcac                                           <  6:206280/136‑1 (MQ=255)                                                                                                            ccAGGTTGCCCATTTCGGGGCGGGCCAG‑TAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGcac                                           >  5:206280/1‑136 (MQ=255)                                                                                                                gTTGCCCATTTCGGGGCGGGCCAG‑TAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGCGGCCAGCACAAGGTTGAGCAGGCCGa                          <  1:169300/149‑1 (MQ=255)                                                                                                                 ttGCCCATTTCGGGGCGGGCCAG‑TAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAgttgtt                                                                                       >  3:186634/1‑88 (MQ=255)                                                                                                                 ttGCCCATTTCGGGGCGGGCCAG‑TAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAgttgtt                                                                                       <  4:186634/88‑1 (MQ=255)                                                                                                                     ccATTTCGGGGCGGGCCAG‑TAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAgg                     >  8:167468/1‑149 (MQ=255)                                                                                                                     ccATTTCGGGGCGGGCCAG‑TAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAgg                     >  2:204409/1‑149 (MQ=255)                                                                                                                     ccATTTCGGGGCGGGCCAG‑TAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAgg                     >  2:165430/1‑149 (MQ=255)                                                                                                                      cATTTCGGGGCGGGCCAG‑TAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAggg                    >  2:158837/1‑149 (MQ=255)                                                                                                                            ggggCGGGCCAG‑TAGCGTCCGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAGGGCCAgg               <  7:218581/148‑1 (MQ=255)                                                                                                                            ggggCGGGCCAG‑TAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAGGGCCAgg               <  3:249373/148‑1 (MQ=255)                                                                                                                            ggggCGGGCCAG‑TAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAGGGCCAGGt              <  7:52308/149‑1 (MQ=255)                                                                                                                             gggcgggcCAG‑TAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACaa                                         <  7:5853/121‑1 (MQ=255)                                                                                                                             gggcgggcCAG‑TAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACaa                                         >  8:5853/1‑121 (MQ=255)                                                                                                                             gggcgggcCAG‑ACGCGTCCGGGTCTGCAGCACGACGGCTACTACCCGCAGGGCGCAGGCCAGGGGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAGGGCCAGGTa             <  1:310465/149‑1 (MQ=255)                                                                                                                              ggcgggcCAG‑TAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGCAACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAGGGCCAGGTa             <  1:69422/149‑1 (MQ=255)                                                                                                                                         tAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAGGGCCAGGTAGACCGCGTCgg  >  4:39853/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                          GCCGGCATCTTGTGCCACGTGTTGAGTGCCGCGTGCCTTGCGCGTGCTGCGGGCAAAGCCCACGGCCAGATGCACGGCCACGGCCAGCGCCGCACACACCAGGGCTGCCAGGTTGCCCATTTCGGGGCGGGCCAG‑TAGCGTCAGGGTCTGCAGCACGACGGCGACTACCAGCAGGGCGCAGGCCAGGTGCTGCAGTTGTTGCCGCGCGCCGCGATGATACAGCGGC‑ACGACCGGGGCCAGCACAAGGTTGAGCAGGCCGAGCAGGGCCAGGTAGACCGCGTCGG  >  NC_002947/1388109‑1388392

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.