| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1636985 = | 51 (1.030) | 4 (0.080) | 4/248 | NT | 8.2% | coding (435/741 nt) | pdxJ | pyridoxine 5'‑phosphate synthase |
| ? | NC_002947 | 1637013 = | 40 (0.840) | coding (463/741 nt) | pdxJ | pyridoxine 5'‑phosphate synthase | |||||
CCCATGCCCCACGCCAAACGCCACACCCTCGACGATCCGCTTGAGCTCTTCAGCCACTTCGGTGGGGGTTTCGGCATCGGCATAACGGCCGGTGTGAAGCTCGATGGCCGGTGCGCCAACCCGACGCGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1637117‑1636985‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTGGCTGAAGAGCTCAAGCGGATCGTCGAGGGTGTGGCGTTTGGCGTGGGGCATGGGCTGATCGTCAATGCCG > NC_002947/1637013‑1637133 CCCATGCCCCACGCCAAACGCCACACCCTCGACGATCCGCTTGAGCTCTTCAGCCACTTCGGTGGGGGTTTCGGCATCGGCATAACGGCCGGTGTGAAGCTCGATGGCCGGTGCGCCAACCCGACGCGAG > 1:302321/1‑130CCCATGCCCCACGCCAAACGCCACACCCTCGACGATCCGCTTGAGCTCTTCAGCCACTTCGGTGGGGGTTTCGGCATCGGCATAACGGCCGGTGTGAAGCTCGATGGCCGGTGCGCCAACCCGACGCGAG < 2:302321/130‑1 GCTCGATGGCCGGTGCGCCAACCCGACGCGAGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTGGCTGAAGAGCTCAAGCGGATCGTCGAGGGTGTGGCGTTTGGCGTGGGGCATGGGCTGATCGT > 6:3280/1‑148 TCGATGGCCGGTGCGCCAACCCGACGCGAGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTGGCTGAAGAGCTCAAGCGGATCGTCGAGGGTGTGGCGT > 7:187157/1‑121 TCGATGGCCGGTGCGCCAACCCGACGCGAGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTGGCTGAAGAGCTCAAGCGGATCGTCGAGGGTGTGGCGT < 8:187157/121‑1 GCCGGTGCGCCAACCCGACGCGAGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTGGCTGAAGAGCTCAAGCGGATCGTCGAGGGTGTGGCGTTTGGCGTGGGGCATGGGCTGATCGTCAATGCCG < 5:3280/148‑1 CCCATGCCCCACGCCAAACGCCACACCCTCGACGATCCGCTTGAGCTCTTCAGCCACTTCGGTGGGGGTTTCGGCATCGGCATAACGGCCGGTGTGAAGCTCGATGGCCGGTGCGCCAACCCGACGCGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1637117‑1636985‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTGGCTGAAGAGCTCAAGCGGATCGTCGAGGGTGTGGCGTTTGGCGTGGGGCATGGGCTGATCGTCAATGCCG > NC_002947/1637013‑1637133 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |