New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1636985 =	51 (1.030)	4 (0.080)	4/248	NT	8.2%	coding (435/741 nt)	pdxJ	pyridoxine 5'‑phosphate synthase
	?	NC_002947	1637013 =	40 (0.840)					coding (463/741 nt)	pdxJ	pyridoxine 5'‑phosphate synthase

GTACCCGAAACCCGTCAGGAGCTGACCACCGAAGGTGGCCTGGATGTGGCAGGCCAGGAAGCGCGGATCAAGGCTGCAGTCGAACGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTGGCTGAAGAGCTCAAGCGGATCGTCGAGGGTGTGGCGTTTGGCGTGGGGCATGGGCTGATCGTCAATGC  >  NC_002947/1636839‑1637131                                                                                                                                                   |                                                                                                                                                   gTACCCGAAACCCGTCAGGAGCTGACCACCGAAGGTGGCCTGGATGTGGCAGGCCAGGAAGCGCGGATCAAGGCTGCAGTCGAACGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAgg                                                                                                                                                   <  4:77791/148‑1 (MQ=255)      cGAAACCCGTCAGGAGCTGACCACCGAAGGTGGCCTGGATGTGGCAGGCCAGGAAGCGCGGATCAAGGCTGCAGTCGAACGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTcgc                                                                                                                                             >  2:127743/1‑149 (MQ=255)      cGAAACCCGTCAGGAGCTGACCACCGAAGGTGGCCTGGATGTGGCAGGCCAGGAAGCGCGGATCAAGGCTGCAGTCGAACGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTcgc                                                                                                                                             >  6:216144/1‑149 (MQ=255)      cGAAACCCGTCAGGAGCTGACCACCGAAGGTGGCCTGGATGTGGCAGGCCAGGAAGCGCGGATCAAGGCTGCAGTCGAACGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTcgc                                                                                                                                             >  6:195377/1‑149 (MQ=255)           cccGTCAGGAGCTGACCACCGAAGGTGGCCTGGATGTGGCAGGCCAGGAAGCGCGGATCAAGGCTGCAGTCGAACGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCgg                                                                                                                                        <  5:216144/149‑1 (MQ=255)            ccGTCAGGAGCTGACCACCGAAGGTGGCCTGGATGTGGCAGGCCAGGAAGCGCGGATCAAGGCTGCAGTCGAACGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGcc                                                                                                                                                 >  5:56243/1‑139 (MQ=255)            ccGTCAGGAGCTGACCACCGAAGGTGGCCTGGATGTGGCAGGCCAGGAAGCGCGGATCAAGGCTGCAGTCGAACGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGcc                                                                                                                                                 <  6:56243/139‑1 (MQ=255)                 aGGAGCTGACCACCGAAGGTGGCCTGGATGTGGCAGGCCAGGAAGCGCGGATCAAGGCTGCAGTCGAACGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGgc                                                                                                                                  <  3:121539/149‑1 (MQ=255)                       tGACCACCGAAGGTGGCCTGGATGTGGCAGGCCAGGAAGCGCGGATCAAGGCTGCAGTCGAACGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCg                                                                                                                            >  3:247795/1‑149 (MQ=255)                          cggcattgacgatcagcccatgccccacgccaaacgccacaccctcgacgatccgcttgagctcttcagccacttcggtgggggtttcggcatcggcataacggccggtgtgaagctcgatGGCCTCGCGTCGGGTTGGCGCACCGGc                                                                                                                          <  5:3280‑M1/27‑1 (MQ=255)                          ccaccGAAGGTGGCCTGGATGTGGCAGGCCAGGAAGCGCGGATCAAGGCTGCAGTCGAACGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGc                                                                                                                          >  7:142816/1‑148 (MQ=255)                           caccGAAGGTGGCCTGGATGTGGCAGGCCAGGAAGCGCGGATCAAGGCTGCAGTCGAACGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCa                                                                                                                        >  2:249019/1‑149 (MQ=255)                              cGAAGGTGGCCTGGATGTGGCAGGCCAGGAAGCGCGGATCAAGGCTGCAGTCGAACGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTgg                                                                                                                                   >  7:171532/1‑135 (MQ=255)                              cGAAGGTGGCCTGGATGTGGCAGGCCAGGAAGCGCGGATCAAGGCTGCAGTCGAACGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTgg                                                                                                                                   <  8:171532/135‑1 (MQ=255)                              cGAAGGTGGCCTGGATGTGGCAGGCCAGGAAGAGCGGATCAAGGCTGCAGTCGAACGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCAACGGCCATc                                                                                                                      >  7:37911/1‑148 (MQ=255)                                  acgatcagcccatgccccacgccaaacgccacaccctcgacgatccgcttgagctcttcagccacttcggtgggggtttcggcatcggcataacggccggtgtgaagctcgatGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGc                                                                                                                  >  6:3280‑M1/114‑148 (MQ=255)                                   gTGGCCTGGATGTGGCAGGCCAGGAAGCGCGGATCAAGGCTGCAGTCGAACGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCtt                                                                                                                <  6:213400/149‑1 (MQ=255)                                    tGGCCTGGATGTGGCAGGCCAGGAAGCGCGGATCAAGGCTGCAGTCGAACGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTc                                                                                                               <  2:32446/149‑1 (MQ=255)                                       gcTGGATGTGGCAGGCCAGGAAGCGCGGATCAAGGCTGCAGTCGAACGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTc                                                                                                               <  3:38377/145‑1 (MQ=255)                                       ccTGGATGTCGCAGTCAAGGAAGCAAGCATCAAGACTGAAGTCGAACGGCTGGAGCGTACCGGTGACGAGGACTCGCTGTTCATCGACGCCGACGAACAGCAGATCGAAGCCTCGCCTCGCGTTGGACCACCGGCAATCGacatac                                                                                                               >  4:38377/1‑141 (MQ=255)                                        cTGGATGTGGCAGGCCAGGAAGCGCGGATCAAGGCTGCAGTCGAACGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCacac                                                                                                           >  4:205529/1‑149 (MQ=255)                                           gATGTGGCAGGCCAGGAAGCGTGGATCAAGGCTGCAGTCGAACGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCgg                                                                                                        >  2:235980/1‑149 (MQ=255)                                                    ggCCAGGAAGCGCGGATCAAGGCTGCAGTCGAACGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTatgc                                                                                               <  8:184992/149‑1 (MQ=255)                                                       cAGGAAGCGCGGATCAAGGCTGCAGTCGAACGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTatgccga                                                                                            >  6:302726/1‑149 (MQ=255)                                                          gAAGCGCGGATCAAGGCTGCAGTCGAACGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTc                                                                                                               <  8:14168/127‑1 (MQ=255)                                                          gAAGCGCGGATCAAGGCTGCAGTCGAACGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTc                                                                                                               >  7:14168/1‑127 (MQ=255)                                                           acgccacaccctcgacgatccgcttgagctcttcagccacttcggtgggggtttcggcatcggcataacggccggtgtgaagctcgatGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGa                                                                                                                    >  7:187157‑M1/89‑121 (MQ=255)                                                           acgccacaccctcgacgatccgcttgagctcttcagccacttcggtgggggtttcggcatcggcataacggccggtgtgaagctcgatGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGa                                                                                                                    <  8:187157‑M1/33‑1 (MQ=255)                                                               gcgGATCAAGGCTGCAGTCGAACGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGaaa                                                                                    <  4:247795/149‑1 (MQ=255)                                                               gcgGATCAAGGCTGCAGTCGAACGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGaaa                                                                                    >  6:45050/1‑149 (MQ=255)                                                                 ggATCAAGGCTGCAGTCGAACGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAAcc                                                                                  <  5:45050/149‑1 (MQ=255)                                                                      aaGGCTGCAGTCGAACGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGAAGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCAc                                                                             >  2:55784/1‑149 (MQ=255)                                                                        ggCTGCAGTCGAACGGCTGGCGCGTACCAGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCAcc                                                                            >  6:294974/1‑148 (MQ=255)                                                                               gTCGAACGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTGGc                                                                    <  3:205529/149‑1 (MQ=255)                                                                                tCGAACGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTGGCt                                                                   >  8:28822/1‑149 (MQ=255)                                                                                   aaCGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTCCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTGGCTGaa                                                                <  5:302726/149‑1 (MQ=255)                                                                                    aCGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTGGCTGAag                                                               <  5:195377/149‑1 (MQ=255)                                                                                         tGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTATGTCGATGCCGAAACCCCCACCGAAGTGGCTGAAGAGCTc                                                          <  1:55784/149‑1 (MQ=255)                                                                                                  ccGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTAtgccgatgccga                                                                                      <  8:285244/112‑1 (MQ=255)                                                                                                  ccGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTAtgccgatgccga                                                                                      >  7:285244/1‑112 (MQ=255)                                                                                                  ccGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTGGCTGAAGAGCTCAAGCGGAtc                                                 <  7:28822/149‑1 (MQ=255)                                                                                                  ccGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTGGCTGAAGAGCTCAAGCGGAtc                                                 <  8:142816/149‑1 (MQ=255)                                                                                                   cGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTGGCTGAAGAGCTCAAGCGGAtcg                                                >  7:162383/1‑149 (MQ=255)                                                                                                        ccGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTatgccgat                                                                                           >  4:44320/1‑101 (MQ=255)                                                                                                        ccGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTatgccgat                                                                                           <  3:44320/101‑1 (MQ=255)                                                                                                               gtCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTCGCTGAAGAGCTCAAGCGGATCGTCGAGGGTGTgg                                    >  4:295344/1‑149 (MQ=255)                                                                                                                  gccgTTCGTCGGCGTCGATGAACAGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTGGCTGAAGAGCTCAAGCGGATCGTCGAGGGTGTGGCGt                                 >  6:6163/4‑149 (MQ=255)                                                                                                                    cgTTCGTCGGCGTCGATGAACAGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTGGCTGAAGAGCTCAAGCGGATCGTCGAGGGTGTGGCGttt                               <  5:6163/148‑1 (MQ=255)                                                                                                                      ttCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTGGCTGAAGAGCTCAAGCGGATCGTCGAGGGTGTGGCGTTTgg                             >  5:32650/1‑149 (MQ=255)                                                                                                                           cGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTAACACCGGCCGTTATGCCGATGCCGAAACCCCCAACGAAGTGGCTGAAGAGCTCAAGCGGATCGTCGAGGGTGTGGCGTTTGGCGTgg                        >  1:123539/1‑149 (MQ=255)                                                                                                                             aCGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTGGCTGAAGAGCTCAAGCGGATCGTCGAGGGTGTGGCGTTTGGCGTgggg                      <  6:32650/149‑1 (MQ=255)                                                                                                                              cGCCGACGTACGGCAGATCGAGGCCTGGCGTCGGGTTTGCGCACCGGCCATCGAGCATCACACCGGCCGTTATGCCGATTGCGAAACACCCACCGAAGTGGCTGAATAGCTCAAGCGGATCGTCGAGGGTGTGGCGTTTTGCGTgg                        <  8:37911/146‑1 (MQ=255)                                                                                                                                ccGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTGGCTGAAGCGCTCAAGCGGATCGTCGAGGGTGTGGCGTTTGGCGTGGGGCAt                   >  2:102583/1‑149 (MQ=255)                                                                                                                                   acgaACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTGGCTGAAGAGCTCAAGCGGATCGTCGAGGGTGTGGCGTTTGGCGTGGGGCATggg                <  5:294974/149‑1 (MQ=255)                                                                                                                                    cgaACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTTGCTGAAGAGCTCAAGCGGATCGTCGAGGGTGTGGCGTTTGGCGTGGGGCATGGGc               <  3:295344/149‑1 (MQ=255)                                                                                                                                       aCGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTatgccgat                                                                                           >  5:222797/1‑70 (MQ=255)                                                                                                                                       aCGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTatgccgat                                                                                           <  6:222797/70‑1 (MQ=255)                                                                                                                                        cGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTatgc                                                                                               >  4:260234/1‑65 (MQ=255)                                                                                                                                                 gAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTGGCTGAAGAGCTCAAGCGGATCGTCGAGGGTGTGGCGTTTGGCGTGGGGCATGGGCTGATCGTCAATGc  <  8:162383/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                   GTACCCGAAACCCGTCAGGAGCTGACCACCGAAGGTGGCCTGGATGTGGCAGGCCAGGAAGCGCGGATCAAGGCTGCAGTCGAACGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTGGCTGAAGAGCTCAAGCGGATCGTCGAGGGTGTGGCGTTTGGCGTGGGGCATGGGCTGATCGTCAATGC  >  NC_002947/1636839‑1637131

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.