New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1636985 =	51 (1.030)	4 (0.080)	4/248	NT	8.2%	coding (435/741 nt)	pdxJ	pyridoxine 5'‑phosphate synthase
	?	NC_002947	1637013 =	40 (0.840)					coding (463/741 nt)	pdxJ	pyridoxine 5'‑phosphate synthase

CACCGAAGGTGGCCTGGATGTGGCAGGCCAGGAAGCGCGGATCAAGGCTGCAGTCGAACGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTGGCTGAAGAGCTCAAGCGGATCGTCGAGGGTGTGGCGTTTGGCGTGGGGCATGGGCTGATCGTCAATGCCGGTCACGGGCTGCATTACCACAACGTC  >  NC_002947/1636865‑1637159                                                                                                                                                     |                                                                                                                                                   caccGAAGGTGGCCTGGATGTGGCAGGCCAGGAAGCGCGGATCAAGGCTGCAGTCGAACGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCa                                                                                                                                                    >  2:249019/1‑149 (MQ=255)    cGAAGGTGGCCTGGATGTGGCAGGCCAGGAAGAGCGGATCAAGGCTGCAGTCGAACGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCAACGGCCATc                                                                                                                                                  >  7:37911/1‑148 (MQ=255)        acgatcagcccatgccccacgccaaacgccacaccctcgacgatccgcttgagctcttcagccacttcggtgggggtttcggcatcggcataacggccggtgtgaagctcgatGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGc                                                                                                                                              >  6:3280‑M1/114‑148 (MQ=255)         gTGGCCTGGATGTGGCAGGCCAGGAAGCGCGGATCAAGGCTGCAGTCGAACGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCtt                                                                                                                                            <  6:213400/149‑1 (MQ=255)          tGGCCTGGATGTGGCAGGCCAGGAAGCGCGGATCAAGGCTGCAGTCGAACGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTc                                                                                                                                           <  2:32446/149‑1 (MQ=255)             gcTGGATGTGGCAGGCCAGGAAGCGCGGATCAAGGCTGCAGTCGAACGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTc                                                                                                                                           <  3:38377/145‑1 (MQ=255)             ccTGGATGTCGCAGTCAAGGAAGCAAGCATCAAGACTGAAGTCGAACGGCTGGAGCGTACCGGTGACGAGGACTCGCTGTTCATCGACGCCGACGAACAGCAGATCGAAGCCTCGCCTCGCGTTGGACCACCGGCAATCGacatac                                                                                                                                           >  4:38377/1‑141 (MQ=255)              cTGGATGTGGCAGGCCAGGAAGCGCGGATCAAGGCTGCAGTCGAACGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCacac                                                                                                                                       >  4:205529/1‑149 (MQ=255)                 gATGTGGCAGGCCAGGAAGCGTGGATCAAGGCTGCAGTCGAACGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCgg                                                                                                                                    >  2:235980/1‑149 (MQ=255)                          ggCCAGGAAGCGCGGATCAAGGCTGCAGTCGAACGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTatgc                                                                                                                           <  8:184992/149‑1 (MQ=255)                             cAGGAAGCGCGGATCAAGGCTGCAGTCGAACGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTatgccga                                                                                                                        >  6:302726/1‑149 (MQ=255)                                gAAGCGCGGATCAAGGCTGCAGTCGAACGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTc                                                                                                                                           >  7:14168/1‑127 (MQ=255)                                gAAGCGCGGATCAAGGCTGCAGTCGAACGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTc                                                                                                                                           <  8:14168/127‑1 (MQ=255)                                 acgccacaccctcgacgatccgcttgagctcttcagccacttcggtgggggtttcggcatcggcataacggccggtgtgaagctcgatGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGa                                                                                                                                                <  8:187157‑M1/33‑1 (MQ=255)                                 acgccacaccctcgacgatccgcttgagctcttcagccacttcggtgggggtttcggcatcggcataacggccggtgtgaagctcgatGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGa                                                                                                                                                >  7:187157‑M1/89‑121 (MQ=255)                                     gcgGATCAAGGCTGCAGTCGAACGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGaaa                                                                                                                <  4:247795/149‑1 (MQ=255)                                     gcgGATCAAGGCTGCAGTCGAACGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGaaa                                                                                                                >  6:45050/1‑149 (MQ=255)                                       ggATCAAGGCTGCAGTCGAACGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAAcc                                                                                                              <  5:45050/149‑1 (MQ=255)                                            aaGGCTGCAGTCGAACGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGAAGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCAc                                                                                                         >  2:55784/1‑149 (MQ=255)                                              ggCTGCAGTCGAACGGCTGGCGCGTACCAGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCAcc                                                                                                        >  6:294974/1‑148 (MQ=255)                                                     gTCGAACGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTGGc                                                                                                <  3:205529/149‑1 (MQ=255)                                                      tCGAACGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTGGCt                                                                                               >  8:28822/1‑149 (MQ=255)                                                         aaCGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTCCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTGGCTGaa                                                                                            <  5:302726/149‑1 (MQ=255)                                                          aCGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTGGCTGAag                                                                                           <  5:195377/149‑1 (MQ=255)                                                               tGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTATGTCGATGCCGAAACCCCCACCGAAGTGGCTGAAGAGCTc                                                                                      <  1:55784/149‑1 (MQ=255)                                                                        ccGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTAtgccgatgccga                                                                                                                  <  8:285244/112‑1 (MQ=255)                                                                        ccGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTAtgccgatgccga                                                                                                                  >  7:285244/1‑112 (MQ=255)                                                                        ccGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTGGCTGAAGAGCTCAAGCGGAtc                                                                             <  7:28822/149‑1 (MQ=255)                                                                        ccGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTGGCTGAAGAGCTCAAGCGGAtc                                                                             <  8:142816/149‑1 (MQ=255)                                                                         cGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTGGCTGAAGAGCTCAAGCGGAtcg                                                                            >  7:162383/1‑149 (MQ=255)                                                                              ccGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTatgccgat                                                                                                                       >  4:44320/1‑101 (MQ=255)                                                                              ccGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTatgccgat                                                                                                                       <  3:44320/101‑1 (MQ=255)                                                                                     gtCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTCGCTGAAGAGCTCAAGCGGATCGTCGAGGGTGTgg                                                                >  4:295344/1‑149 (MQ=255)                                                                                        gccgTTCGTCGGCGTCGATGAACAGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTGGCTGAAGAGCTCAAGCGGATCGTCGAGGGTGTGGCGt                                                             >  6:6163/4‑149 (MQ=255)                                                                                          cgTTCGTCGGCGTCGATGAACAGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTGGCTGAAGAGCTCAAGCGGATCGTCGAGGGTGTGGCGttt                                                           <  5:6163/148‑1 (MQ=255)                                                                                            ttCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTGGCTGAAGAGCTCAAGCGGATCGTCGAGGGTGTGGCGTTTgg                                                         >  5:32650/1‑149 (MQ=255)                                                                                                 cGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTAACACCGGCCGTTATGCCGATGCCGAAACCCCCAACGAAGTGGCTGAAGAGCTCAAGCGGATCGTCGAGGGTGTGGCGTTTGGCGTgg                                                    >  1:123539/1‑149 (MQ=255)                                                                                                   aCGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTGGCTGAAGAGCTCAAGCGGATCGTCGAGGGTGTGGCGTTTGGCGTgggg                                                  <  6:32650/149‑1 (MQ=255)                                                                                                    cGCCGACGTACGGCAGATCGAGGCCTGGCGTCGGGTTTGCGCACCGGCCATCGAGCATCACACCGGCCGTTATGCCGATTGCGAAACACCCACCGAAGTGGCTGAATAGCTCAAGCGGATCGTCGAGGGTGTGGCGTTTTGCGTgg                                                    <  8:37911/146‑1 (MQ=255)                                                                                                      ccGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTGGCTGAAGCGCTCAAGCGGATCGTCGAGGGTGTGGCGTTTGGCGTGGGGCAt                                               >  2:102583/1‑149 (MQ=255)                                                                                                         acgaACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTGGCTGAAGAGCTCAAGCGGATCGTCGAGGGTGTGGCGTTTGGCGTGGGGCATggg                                            <  5:294974/149‑1 (MQ=255)                                                                                                          cgaACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTTGCTGAAGAGCTCAAGCGGATCGTCGAGGGTGTGGCGTTTGGCGTGGGGCATGGGc                                           <  3:295344/149‑1 (MQ=255)                                                                                                             aCGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTatgccgat                                                                                                                       <  6:222797/70‑1 (MQ=255)                                                                                                             aCGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTatgccgat                                                                                                                       >  5:222797/1‑70 (MQ=255)                                                                                                              cGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTatgc                                                                                                                           >  4:260234/1‑65 (MQ=255)                                                                                                                  gctcgatggccggtgcgccaacccgacgcgaggccATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTGGCTGAAGAGCTCAAGCGGATCGTCGAGGGTGTGGCGTTTGGCGTGGGGCATGGGCTGATCGt                                    >  6:3280‑M2/36‑148 (MQ=255)                                                                                                                    tcgatggccggtgcgccaacccgacgcgaggccATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTGGCTGAAGAGCTCAAGCGGATCGTCGAGGGTGTGGCGt                                                             >  7:187157‑M2/34‑121 (MQ=255)                                                                                                                    tcgatggccggtgcgccaacccgacgcgaggccATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTGGCTGAAGAGCTCAAGCGGATCGTCGAGGGTGTGGCGt                                                             <  8:187157‑M2/88‑1 (MQ=255)                                                                                                                       gAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTGGCTGAAGAGCTCAAGCGGATCGTCGAGGGTGTGGCGTTTGGCGTGGGGCATGGGCTGATCGTCAATGc                              <  8:162383/149‑1 (MQ=255)                                                                                                                          gccggtgcgccaacccgacgcgaggccATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTGGCTGAAGAGCTCAAGCGGATCGTCGAGGGTGTGGCGTTTGGCGTGGGGCATGGGCTGATCGTCAATGCCg                            <  5:3280‑M2/121‑1 (MQ=255)                                                                                                                            CTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTGGCTGAAGAGCTCAAGCGGATCGTCGAGGGTGTGGCGTTTGGCGTGGGGCATggg                                            <  2:302321‑M1/130‑1 (MQ=255)                                                                                                                            CTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTGGCTGAAGAGCTCAAGCGGATCGTCGAGGGTGTGGCGTTTGGCGTGGGGCATggg                                            >  1:302321‑M1/1‑130 (MQ=255)                                                                                                                                            gcACCGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTGGCTGAAGAGCTAAAGCGGATCGTCGAGGGTGTGGCGTTTGGCGTGGGGCATGGGCTGATCGTCAATGCCTGTCCCGGGATGCATTACca         >  4:92379/1‑149 (MQ=255)                                                                                                                                                cGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTGGCTGAAGAGCTCAAGCGGATCGTCGAGGGTGTGGCGTTTGGCGTGGGGCATGGGCTGATCGTCAATGCCGGTCACGGGCTGCATTAc           >  4:243771/1‑143 (MQ=255)                                                                                                                                                cGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTGGCTGAAGAGCTCAAGCGGATCGTCGAGGGTGTGGCGTTTGGCGTGGGGCATGGGCTGATCGTCAATGCCGGTCACGGGCTGCATTAc           <  3:243771/143‑1 (MQ=255)                                                                                                                                                cGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTGGCTGAAGAGCTCAAGCGGATCGTCGAGGGTGTGGCGTTTGGCGTGGGGCATGGGCTGATCGTCAATGCCGGTCACGGGCTGCATTACCACAAc     >  3:154678/1‑149 (MQ=255)                                                                                                                                                     aTCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTGGCTGAAGAGCTCAAGCGGATCGTCGAGGGTGTGGCGTTTGGCGTGGGGCATGGGCTGATCGTCAATGCCGGTCACGGGCTGCATTACCACAACGTc  >  3:294909/1‑147 (MQ=255)                                                                                                                                                     |                                                                                                                                                   CACCGAAGGTGGCCTGGATGTGGCAGGCCAGGAAGCGCGGATCAAGGCTGCAGTCGAACGGCTGGCGCGTACCGGTGCCGAGGTGTCGCTGTTCATCGACGCCGACGAACGGCAGATCGAGGCCTCGCGTCGGGTTGGCGCACCGGCCATCGAGCTTCACACCGGCCGTTATGCCGATGCCGAAACCCCCACCGAAGTGGCTGAAGAGCTCAAGCGGATCGTCGAGGGTGTGGCGTTTGGCGTGGGGCATGGGCTGATCGTCAATGCCGGTCACGGGCTGCATTACCACAACGTC  >  NC_002947/1636865‑1637159

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.